Wall clock time and date at job start Mon Mar 30 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.29553 * 2 1 4 4 N 1.45752 * 109.30272 * 240.42161 * 2 1 3 5 5 C 1.33346 * 124.10865 * 220.84061 * 4 2 1 6 6 O 1.21282 * 118.24831 * 182.19748 * 5 4 2 7 7 C 1.50176 * 123.50821 * 2.17325 * 5 4 2 8 8 C 1.53070 * 109.89234 * 342.44384 * 7 5 4 9 9 C 1.52918 * 109.13844 * 119.48485 * 2 1 3 10 10 H 1.09004 * 109.60095 * 290.88538 * 9 2 1 11 11 N 1.46500 * 109.59872 * 51.20155 * 9 2 1 12 12 C 1.34781 * 119.99676 * 204.99793 * 11 9 2 13 13 O 1.21433 * 120.00206 * 0.02562 * 12 11 9 14 14 C 1.48836 * 119.99822 * 180.02562 * 12 11 9 15 15 O 1.21500 * 120.00003 * 0.02562 * 14 12 11 16 16 N 1.34773 * 119.99986 * 180.02562 * 14 12 11 17 17 C 1.36117 * 119.99728 * 179.97438 * 16 14 12 18 18 H 1.08003 * 120.00527 * 0.02562 * 17 16 14 19 19 C 1.39592 * 119.99737 * 180.02562 * 17 16 14 20 20 N 1.31020 * 120.00027 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99973 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47237 * 89.99929 * 21 19 17 23 23 H 1.48497 * 109.46894 * 210.00193 * 21 19 17 24 24 H 1.48502 * 109.47212 * 330.00014 * 21 19 17 25 25 H 1.08997 * 109.46439 * 179.58193 * 1 2 3 26 26 H 1.08995 * 109.47015 * 299.58034 * 1 2 3 27 27 H 1.08999 * 109.46945 * 59.58268 * 1 2 3 28 28 H 0.97007 * 117.94848 * 40.81260 * 4 2 1 29 29 H 1.09003 * 109.40053 * 102.57039 * 7 5 4 30 30 H 1.08999 * 109.40681 * 222.31268 * 7 5 4 31 31 H 1.08993 * 109.67862 * 168.63106 * 8 7 5 32 32 H 1.09000 * 109.66999 * 289.16783 * 8 7 5 33 33 H 0.96999 * 120.00290 * 25.00241 * 11 9 2 34 34 H 0.96999 * 119.99870 * 359.97438 * 16 14 12 35 35 H 0.96999 * 119.99930 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8902 1.0288 0.0000 4 7 2.0119 -0.6790 -1.1963 5 6 3.0473 -1.5190 -1.2136 6 8 3.3831 -1.9945 -2.2776 7 6 3.8204 -1.9074 0.0140 8 6 3.5479 -0.9062 1.1394 9 6 2.0314 -0.7111 1.2576 10 1 1.8054 -0.1050 2.1350 11 7 1.3755 -2.0154 1.3791 12 6 1.2475 -2.5951 2.5891 13 8 1.6753 -2.0361 3.5785 14 6 0.5817 -3.9205 2.7125 15 8 0.1540 -4.4801 1.7224 16 7 0.4532 -4.5000 3.9225 17 6 -0.1562 -5.7119 4.0353 18 1 -0.5364 -6.2094 3.1553 19 6 -0.2898 -6.3119 5.2886 20 7 0.1709 -5.7083 6.3563 21 14 -1.1254 -7.9754 5.4435 22 1 -0.1119 -9.0527 5.3115 23 1 -1.7852 -8.0762 6.7700 24 1 -2.1435 -8.1196 4.3721 25 1 -0.3632 -1.0276 -0.0075 26 1 -0.3633 0.5073 0.8937 27 1 -0.3633 0.5203 -0.8862 28 1 1.5500 -0.5096 -2.0324 29 1 3.5151 -2.9037 0.3340 30 1 4.8859 -1.9128 -0.2156 31 1 3.9422 -1.2937 2.0788 32 1 4.0237 0.0463 0.9063 33 1 1.0335 -2.4618 0.5887 34 1 0.7949 -4.0535 4.7128 35 1 0.0778 -6.1250 7.2273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393535416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:37 Heat of formation + Delta-G solvation = -141.091308 kcal Electronic energy + Delta-G solvation = -20973.349716 eV Core-core repulsion = 17583.842941 eV Total energy + Delta-G solvation = -3389.506774 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.03018 -40.86834 -39.25663 -38.08658 -36.36087 -35.01812 -33.66631 -33.34541 -31.61463 -28.38009 -27.58546 -25.14283 -24.00068 -22.96489 -21.30760 -20.44453 -20.17239 -18.67003 -18.28194 -17.46282 -17.27794 -16.73456 -16.66411 -16.32091 -15.96542 -15.75179 -15.47942 -14.83773 -14.58710 -14.55831 -14.27004 -13.77006 -13.66719 -13.44297 -12.97976 -12.69223 -12.58330 -12.44185 -12.24421 -12.17235 -12.10908 -12.06986 -11.66951 -10.90966 -10.29524 -10.28106 -10.24362 -10.08823 -8.66258 -6.10812 0.60931 1.41203 1.46629 1.54287 1.55762 1.78560 2.23371 2.30310 2.38421 3.15458 3.24206 3.42923 3.52719 3.67471 3.88341 4.03274 4.22639 4.29419 4.33710 4.62955 4.77986 4.85082 4.89511 4.94875 5.05562 5.25190 5.30634 5.35283 5.68287 5.79962 6.13090 6.25094 6.35857 6.80056 7.00381 7.15193 7.28976 7.81106 8.49320 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031054 B = 0.004463 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.433988 B = 6271.831146 C = 6425.071687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.139 3.861 3 H 0.133 0.867 4 N -0.705 5.705 5 C 0.521 3.479 6 O -0.605 6.605 7 C -0.135 4.135 8 C -0.129 4.129 9 C 0.124 3.876 10 H 0.118 0.882 11 N -0.689 5.689 12 C 0.527 3.473 13 O -0.555 6.555 14 C 0.385 3.615 15 O -0.621 6.621 16 N -0.510 5.510 17 C -0.346 4.346 18 H 0.096 0.904 19 C -0.002 4.002 20 N -0.894 5.894 21 Si 1.007 2.993 22 H -0.266 1.266 23 H -0.266 1.266 24 H -0.266 1.266 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.407 0.593 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.409 0.591 34 H 0.402 0.598 35 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.938 13.634 -7.895 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.035 3.965 3 H 0.151 0.849 4 N -0.356 5.356 5 C 0.309 3.691 6 O -0.487 6.487 7 C -0.175 4.175 8 C -0.167 4.167 9 C 0.020 3.980 10 H 0.136 0.864 11 N -0.342 5.342 12 C 0.310 3.690 13 O -0.433 6.433 14 C 0.170 3.830 15 O -0.511 6.511 16 N -0.143 5.143 17 C -0.475 4.475 18 H 0.114 0.886 19 C -0.206 4.206 20 N -0.531 5.531 21 Si 0.828 3.172 22 H -0.191 1.191 23 H -0.190 1.190 24 H -0.190 1.190 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.244 0.756 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.092 0.908 32 H 0.134 0.866 33 H 0.245 0.755 34 H 0.236 0.764 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.262 13.400 -7.924 15.906 hybrid contribution -0.529 -0.943 0.040 1.082 sum 2.732 12.458 -7.884 14.994 Atomic orbital electron populations 1.22190 0.93027 1.02663 1.04617 1.21483 0.95688 0.97400 0.81951 0.84916 1.45609 1.31641 1.45455 1.12936 1.20413 0.80484 0.77540 0.90632 1.90738 1.69019 1.55580 1.33386 1.21580 1.02000 1.01198 0.92681 1.22092 0.95101 1.01080 0.98437 1.21704 0.92690 0.83680 0.99962 0.86419 1.45687 1.58900 1.21275 1.08294 1.19884 0.79252 0.85770 0.84123 1.90686 1.49980 1.65043 1.37628 1.19775 0.89769 0.88941 0.84506 1.90566 1.56525 1.66892 1.37103 1.41637 1.46929 1.17840 1.07942 1.19934 1.36018 0.96070 0.95526 0.88625 1.26473 0.96753 1.03823 0.93592 1.69537 1.42870 1.40702 1.00032 0.84735 0.78342 0.75717 0.78386 1.19104 1.19017 1.18976 0.93740 0.89798 0.89399 0.75633 0.90061 0.86890 0.90795 0.86571 0.75484 0.76365 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.11 71.98 0.66 -1.64 16 2 C 0.14 1.88 3.37 45.11 0.15 2.03 16 3 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 4 N -0.70 -12.46 5.02 -446.65 -2.24 -14.70 16 5 C 0.52 13.09 7.49 87.71 0.66 13.75 16 6 O -0.60 -20.60 17.78 -3.04 -0.05 -20.65 16 7 C -0.13 -3.07 5.60 29.71 0.17 -2.90 16 8 C -0.13 -2.40 5.80 30.74 0.18 -2.22 16 9 C 0.12 2.48 2.37 45.08 0.11 2.59 16 10 H 0.12 2.33 7.57 -2.38 -0.02 2.31 16 11 N -0.69 -20.40 3.28 -444.00 -1.46 -21.86 16 12 C 0.53 20.97 7.84 87.08 0.68 21.66 16 13 O -0.56 -23.31 16.13 -3.51 -0.06 -23.37 16 14 C 0.39 19.10 7.82 87.08 0.68 19.78 16 15 O -0.62 -33.38 16.03 -3.72 -0.06 -33.44 16 16 N -0.51 -27.24 5.25 -308.87 -1.62 -28.86 16 17 C -0.35 -19.21 9.67 84.36 0.82 -18.39 16 18 H 0.10 5.51 7.15 -2.91 -0.02 5.49 16 19 C 0.00 -0.09 5.51 85.14 0.47 0.37 16 20 N -0.89 -47.12 13.03 21.77 0.28 -46.84 16 21 Si 1.01 40.41 29.56 68.60 2.03 42.44 16 22 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 23 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 24 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 25 H 0.04 0.87 6.93 -2.39 -0.02 0.85 16 26 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.41 6.36 8.67 -92.70 -0.80 5.56 16 29 H 0.08 2.26 7.78 -2.39 -0.02 2.24 16 30 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.12 1.39 8.13 -2.39 -0.02 1.37 16 33 H 0.41 12.66 7.07 -92.71 -0.66 12.00 16 34 H 0.40 21.54 7.35 -92.71 -0.68 20.86 16 35 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 Total: -1.00 -70.99 301.63 0.41 -70.58 By element: Atomic # 1 Polarization: 42.66 SS G_CDS: -0.98 Total: 41.68 kcal Atomic # 6 Polarization: 30.45 SS G_CDS: 4.57 Total: 35.01 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -5.03 Total: -112.26 kcal Atomic # 8 Polarization: -77.29 SS G_CDS: -0.17 Total: -77.46 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -70.99 0.41 -70.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393535416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.512 kcal (2) G-P(sol) polarization free energy of solvation -70.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds