Wall clock time and date at job start Mon Mar 30 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.12717 * 2 1 4 4 N 1.45759 * 109.29739 * 240.52477 * 2 1 3 5 5 C 1.33355 * 124.10157 * 220.60832 * 4 2 1 6 6 O 1.21280 * 118.23980 * 182.24506 * 5 4 2 7 7 C 1.50173 * 123.50981 * 2.22535 * 5 4 2 8 8 C 1.53064 * 109.89245 * 342.41462 * 7 5 4 9 9 C 1.52914 * 109.30342 * 119.48835 * 2 1 3 10 10 H 1.08997 * 109.73948 * 51.22559 * 9 2 1 11 11 N 1.46506 * 109.60396 * 290.81928 * 9 2 1 12 12 C 1.34773 * 119.99968 * 155.81152 * 11 9 2 13 13 O 1.21435 * 120.00255 * 359.73079 * 12 11 9 14 14 C 1.48836 * 119.99906 * 180.02562 * 12 11 9 15 15 O 1.21502 * 119.99551 * 359.72779 * 14 12 11 16 16 N 1.34777 * 119.99935 * 179.73002 * 14 12 11 17 17 C 1.36115 * 119.99626 * 180.02562 * 16 14 12 18 18 H 1.07997 * 120.00514 * 359.97438 * 17 16 14 19 19 C 1.39590 * 119.99653 * 179.97438 * 17 16 14 20 20 N 1.31005 * 120.00105 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99801 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47155 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47086 * 120.00083 * 21 19 17 24 24 H 1.48503 * 109.47243 * 240.00145 * 21 19 17 25 25 H 1.09001 * 109.46765 * 300.50809 * 1 2 3 26 26 H 1.08996 * 109.47271 * 60.51597 * 1 2 3 27 27 H 1.09007 * 109.46958 * 180.51409 * 1 2 3 28 28 H 0.96991 * 117.94869 * 40.61332 * 4 2 1 29 29 H 1.09007 * 109.39816 * 222.28481 * 7 5 4 30 30 H 1.09000 * 109.39705 * 102.54876 * 7 5 4 31 31 H 1.08999 * 109.67890 * 289.16559 * 8 7 5 32 32 H 1.09003 * 109.67494 * 168.63121 * 8 7 5 33 33 H 0.96998 * 119.99507 * 335.82007 * 11 9 2 34 34 H 0.96996 * 119.99887 * 359.97438 * 16 14 12 35 35 H 0.96999 * 120.00051 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8872 1.0298 0.0000 4 7 2.0117 -0.6769 -1.1976 5 6 3.0500 -1.5135 -1.2171 6 8 3.3858 -1.9867 -2.2821 7 6 3.8259 -1.9007 0.0089 8 6 3.5523 -0.9013 1.1356 9 6 2.0355 -0.7104 1.2562 10 1 1.5508 -1.6822 1.3498 11 7 1.7351 0.1043 2.4362 12 6 1.6264 -0.4776 3.6470 13 8 1.7726 -1.6779 3.7591 14 6 1.3206 0.3500 4.8456 15 8 1.1738 1.5509 4.7332 16 7 1.2065 -0.2326 6.0556 17 6 0.9263 0.5242 7.1516 18 1 0.7958 1.5916 7.0519 19 6 0.8076 -0.0793 8.4047 20 7 0.9654 -1.3742 8.5257 21 14 0.4224 0.9593 9.9088 22 1 0.2905 2.3828 9.5069 23 1 -0.8513 0.4969 10.5166 24 1 1.5211 0.8237 10.8986 25 1 -0.3633 0.5217 0.8854 26 1 -0.3633 0.5058 -0.8945 27 1 -0.3633 -1.0277 0.0092 28 1 1.5481 -0.5082 -2.0327 29 1 4.8912 -1.9028 -0.2224 30 1 3.5241 -2.8982 0.3284 31 1 4.0249 0.0528 0.9027 32 1 3.9491 -1.2886 2.0741 33 1 1.6143 1.0625 2.3459 34 1 1.3233 -1.1914 6.1451 35 1 0.8833 -1.7935 9.3965 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393535417.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:41 Heat of formation + Delta-G solvation = -118.095838 kcal Electronic energy + Delta-G solvation = -20535.359229 eV Core-core repulsion = 17146.849613 eV Total energy + Delta-G solvation = -3388.509616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77692 -39.47257 -37.68730 -36.76900 -34.57636 -33.93239 -32.85517 -31.49136 -30.50425 -27.14996 -25.74570 -23.65439 -23.01921 -21.90840 -19.98989 -19.29193 -18.38760 -17.43991 -16.98357 -16.36870 -15.91322 -15.48170 -15.17208 -14.82317 -14.49790 -14.38848 -14.14279 -13.87960 -13.30294 -12.93368 -12.91334 -12.77714 -12.39496 -12.04190 -11.82886 -11.76179 -11.35163 -11.25974 -11.12074 -10.60381 -10.46593 -10.43751 -9.92422 -9.80178 -9.34867 -8.95593 -8.37910 -8.30338 -6.74640 -4.06754 2.31539 2.47183 2.83852 3.08817 3.12825 3.19161 3.36425 3.99292 4.15048 4.24234 4.39369 4.51251 4.73903 4.85600 4.95696 5.04155 5.10812 5.17560 5.40939 5.45836 5.58737 5.66525 5.86791 5.88471 5.94258 6.03699 6.53870 6.57332 7.09839 7.24036 7.55519 7.75674 8.01050 8.22573 8.49793 8.88030 9.23335 9.76431 10.39991 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044308 B = 0.003796 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.787733 B = 7374.744339 C = 7691.831813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.131 3.869 3 H 0.083 0.917 4 N -0.711 5.711 5 C 0.521 3.479 6 O -0.561 6.561 7 C -0.132 4.132 8 C -0.138 4.138 9 C 0.137 3.863 10 H 0.099 0.901 11 N -0.708 5.708 12 C 0.518 3.482 13 O -0.542 6.542 14 C 0.391 3.609 15 O -0.598 6.598 16 N -0.496 5.496 17 C -0.306 4.306 18 H 0.114 0.886 19 C 0.032 3.968 20 N -0.866 5.866 21 Si 0.938 3.062 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.400 0.600 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.411 0.589 34 H 0.405 0.595 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.082 1.518 -12.863 12.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.025 3.975 3 H 0.101 0.899 4 N -0.364 5.364 5 C 0.309 3.691 6 O -0.440 6.440 7 C -0.172 4.172 8 C -0.177 4.177 9 C 0.031 3.969 10 H 0.117 0.883 11 N -0.362 5.362 12 C 0.302 3.698 13 O -0.418 6.418 14 C 0.176 3.824 15 O -0.487 6.487 16 N -0.130 5.130 17 C -0.436 4.436 18 H 0.132 0.868 19 C -0.176 4.176 20 N -0.504 5.504 21 Si 0.764 3.236 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.237 0.763 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.248 0.752 34 H 0.240 0.760 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.376 0.987 -13.010 13.120 hybrid contribution -0.395 0.374 0.510 0.746 sum 0.981 1.361 -12.500 12.612 Atomic orbital electron populations 1.22205 0.93351 1.03484 1.03429 1.21134 0.95447 0.96457 0.84422 0.89895 1.45534 1.32540 1.46668 1.11684 1.20306 0.80009 0.77659 0.91158 1.90754 1.67568 1.53965 1.31719 1.21612 1.01642 1.01532 0.92453 1.22136 0.96074 0.99833 0.99611 1.21111 0.95468 0.96307 0.84027 0.88308 1.45532 1.72852 1.12076 1.05768 1.20727 0.76386 0.87900 0.84756 1.90701 1.49823 1.15234 1.86062 1.18876 0.91434 0.88063 0.84053 1.90589 1.58912 1.14110 1.85068 1.41577 1.54608 1.11574 1.05272 1.19945 1.44994 0.94291 0.84400 0.86840 1.25603 0.96023 0.96064 0.99864 1.69483 1.44639 1.09652 1.26633 0.85667 0.78246 0.79984 0.79734 1.18664 1.20243 1.20227 0.90051 0.91698 0.91594 0.76337 0.87744 0.87711 0.90749 0.89363 0.75249 0.75988 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.32 37.16 0.35 -1.04 16 2 C 0.13 1.17 3.18 -68.37 -0.22 0.96 16 3 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 4 N -0.71 -6.73 5.12 -54.85 -0.28 -7.01 16 5 C 0.52 6.19 7.71 -11.87 -0.09 6.10 16 6 O -0.56 -8.74 17.78 5.56 0.10 -8.64 16 7 C -0.13 -1.36 6.03 -28.11 -0.17 -1.53 16 8 C -0.14 -1.51 5.62 -26.52 -0.15 -1.66 16 9 C 0.14 1.61 1.87 -67.79 -0.13 1.48 16 10 H 0.10 1.31 7.56 -51.93 -0.39 0.92 16 11 N -0.71 -10.26 4.72 -54.30 -0.26 -10.52 16 12 C 0.52 10.10 7.84 -11.88 -0.09 10.01 16 13 O -0.54 -11.52 16.14 5.42 0.09 -11.43 16 14 C 0.39 9.20 7.82 -11.87 -0.09 9.11 16 15 O -0.60 -15.01 16.03 5.36 0.09 -14.93 16 16 N -0.50 -12.62 5.25 -11.59 -0.06 -12.68 16 17 C -0.31 -8.09 9.67 -15.15 -0.15 -8.24 16 18 H 0.11 3.07 7.15 -52.49 -0.38 2.70 16 19 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 20 N -0.87 -22.45 13.03 55.53 0.72 -21.72 16 21 Si 0.94 19.38 29.56 -169.99 -5.02 14.35 16 22 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 25 H 0.08 0.75 7.88 -51.93 -0.41 0.34 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.40 3.32 8.66 -40.82 -0.35 2.96 16 29 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.41 5.53 8.05 -40.82 -0.33 5.20 16 34 H 0.40 10.39 7.35 -40.82 -0.30 10.09 16 35 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 LS Contribution 305.43 15.07 4.60 4.60 Total: -1.00 -31.22 305.43 -5.11 -36.33 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -4.25 Total: 15.76 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: -0.84 Total: 15.90 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.13 Total: -51.94 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: 0.27 Total: -35.00 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.22 -5.11 -36.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393535417.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.765 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds