Wall clock time and date at job start Mon Mar 30 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.12717 * 2 1 4 4 N 1.45759 * 109.29739 * 240.52477 * 2 1 3 5 5 C 1.33355 * 124.10157 * 220.60832 * 4 2 1 6 6 O 1.21280 * 118.23980 * 182.24506 * 5 4 2 7 7 C 1.50173 * 123.50981 * 2.22535 * 5 4 2 8 8 C 1.53064 * 109.89245 * 342.41462 * 7 5 4 9 9 C 1.52914 * 109.30342 * 119.48835 * 2 1 3 10 10 H 1.08997 * 109.73948 * 51.22559 * 9 2 1 11 11 N 1.46506 * 109.60396 * 290.81928 * 9 2 1 12 12 C 1.34773 * 119.99968 * 155.81152 * 11 9 2 13 13 O 1.21435 * 120.00255 * 359.73079 * 12 11 9 14 14 C 1.48836 * 119.99906 * 180.02562 * 12 11 9 15 15 O 1.21502 * 119.99551 * 359.72779 * 14 12 11 16 16 N 1.34777 * 119.99935 * 179.73002 * 14 12 11 17 17 C 1.36115 * 119.99626 * 180.02562 * 16 14 12 18 18 H 1.07997 * 120.00514 * 359.97438 * 17 16 14 19 19 C 1.39590 * 119.99653 * 179.97438 * 17 16 14 20 20 N 1.31005 * 120.00105 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99801 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47155 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47086 * 120.00083 * 21 19 17 24 24 H 1.48503 * 109.47243 * 240.00145 * 21 19 17 25 25 H 1.09001 * 109.46765 * 300.50809 * 1 2 3 26 26 H 1.08996 * 109.47271 * 60.51597 * 1 2 3 27 27 H 1.09007 * 109.46958 * 180.51409 * 1 2 3 28 28 H 0.96991 * 117.94869 * 40.61332 * 4 2 1 29 29 H 1.09007 * 109.39816 * 222.28481 * 7 5 4 30 30 H 1.09000 * 109.39705 * 102.54876 * 7 5 4 31 31 H 1.08999 * 109.67890 * 289.16559 * 8 7 5 32 32 H 1.09003 * 109.67494 * 168.63121 * 8 7 5 33 33 H 0.96998 * 119.99507 * 335.82007 * 11 9 2 34 34 H 0.96996 * 119.99887 * 359.97438 * 16 14 12 35 35 H 0.96999 * 120.00051 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8872 1.0298 0.0000 4 7 2.0117 -0.6769 -1.1976 5 6 3.0500 -1.5135 -1.2171 6 8 3.3858 -1.9867 -2.2821 7 6 3.8259 -1.9007 0.0089 8 6 3.5523 -0.9013 1.1356 9 6 2.0355 -0.7104 1.2562 10 1 1.5508 -1.6822 1.3498 11 7 1.7351 0.1043 2.4362 12 6 1.6264 -0.4776 3.6470 13 8 1.7726 -1.6779 3.7591 14 6 1.3206 0.3500 4.8456 15 8 1.1738 1.5509 4.7332 16 7 1.2065 -0.2326 6.0556 17 6 0.9263 0.5242 7.1516 18 1 0.7958 1.5916 7.0519 19 6 0.8076 -0.0793 8.4047 20 7 0.9654 -1.3742 8.5257 21 14 0.4224 0.9593 9.9088 22 1 0.2905 2.3828 9.5069 23 1 -0.8513 0.4969 10.5166 24 1 1.5211 0.8237 10.8986 25 1 -0.3633 0.5217 0.8854 26 1 -0.3633 0.5058 -0.8945 27 1 -0.3633 -1.0277 0.0092 28 1 1.5481 -0.5082 -2.0327 29 1 4.8912 -1.9028 -0.2224 30 1 3.5241 -2.8982 0.3284 31 1 4.0249 0.0528 0.9027 32 1 3.9491 -1.2886 2.0741 33 1 1.6143 1.0625 2.3459 34 1 1.3233 -1.1914 6.1451 35 1 0.8833 -1.7935 9.3965 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393535417.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:40 Heat of formation + Delta-G solvation = -143.733330 kcal Electronic energy + Delta-G solvation = -20536.470954 eV Core-core repulsion = 17146.849613 eV Total energy + Delta-G solvation = -3389.621341 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.86430 -40.96352 -39.27211 -38.08561 -36.36475 -35.20669 -33.88072 -33.40119 -31.46747 -28.37329 -27.38936 -24.96446 -24.07697 -23.02305 -21.35436 -20.62410 -20.19896 -18.69797 -18.35782 -17.59855 -17.15543 -16.83637 -16.50530 -16.36357 -15.82910 -15.70878 -15.51778 -15.02580 -14.66772 -14.54853 -14.12986 -13.72175 -13.65367 -13.29823 -13.01566 -12.95371 -12.62914 -12.53580 -12.25451 -12.23707 -12.07039 -12.02095 -11.65423 -10.91942 -10.27216 -10.24208 -10.22424 -10.19201 -8.64276 -6.08595 0.61780 1.42702 1.47206 1.53716 1.56652 1.67904 2.23112 2.35205 2.40323 3.17551 3.24576 3.34379 3.52731 3.65638 3.88317 4.01731 4.15557 4.20887 4.28778 4.52649 4.73843 4.82523 4.89407 4.96955 5.04370 5.22482 5.27892 5.30870 5.70249 5.76088 6.15592 6.22429 6.39732 6.83218 7.03018 7.12521 7.30968 7.82406 8.51590 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044308 B = 0.003796 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.787733 B = 7374.744339 C = 7691.831813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 H 0.107 0.893 4 N -0.698 5.698 5 C 0.521 3.479 6 O -0.601 6.601 7 C -0.126 4.126 8 C -0.132 4.132 9 C 0.133 3.867 10 H 0.086 0.914 11 N -0.682 5.682 12 C 0.527 3.473 13 O -0.560 6.560 14 C 0.391 3.609 15 O -0.614 6.614 16 N -0.512 5.512 17 C -0.343 4.343 18 H 0.100 0.900 19 C -0.004 4.004 20 N -0.896 5.896 21 Si 1.007 2.993 22 H -0.263 1.263 23 H -0.268 1.268 24 H -0.268 1.268 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.410 0.590 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.420 0.580 34 H 0.401 0.599 35 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 2.463 -13.541 13.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 H 0.125 0.875 4 N -0.350 5.350 5 C 0.309 3.691 6 O -0.483 6.483 7 C -0.166 4.166 8 C -0.171 4.171 9 C 0.027 3.973 10 H 0.104 0.896 11 N -0.336 5.336 12 C 0.310 3.690 13 O -0.438 6.438 14 C 0.176 3.824 15 O -0.504 6.504 16 N -0.146 5.146 17 C -0.473 4.473 18 H 0.118 0.882 19 C -0.208 4.208 20 N -0.534 5.534 21 Si 0.829 3.171 22 H -0.187 1.187 23 H -0.193 1.193 24 H -0.193 1.193 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.247 0.753 29 H 0.135 0.865 30 H 0.125 0.875 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.258 0.742 34 H 0.235 0.765 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.259 1.963 -13.720 13.917 hybrid contribution -0.363 0.096 0.585 0.695 sum 0.895 2.059 -13.135 13.326 Atomic orbital electron populations 1.22204 0.92537 1.03291 1.04297 1.21126 0.95938 0.96888 0.82603 0.87514 1.45435 1.31687 1.45703 1.12210 1.20498 0.80263 0.77469 0.90870 1.90745 1.68865 1.55625 1.33072 1.21585 1.02323 1.01314 0.91422 1.22072 0.95092 1.00824 0.99103 1.21326 0.96367 0.95657 0.83907 0.89585 1.45360 1.70545 1.12669 1.04978 1.19977 0.76906 0.87097 0.85065 1.90703 1.51063 1.15682 1.86385 1.19606 0.89664 0.88276 0.84835 1.90560 1.59030 1.15086 1.85695 1.41660 1.55729 1.11274 1.05934 1.19999 1.47636 0.93978 0.85686 0.88231 1.26491 0.94997 0.97204 1.02146 1.69545 1.45110 1.10982 1.27755 0.84674 0.78440 0.78134 0.75901 1.18668 1.19269 1.19262 0.90816 0.89253 0.92349 0.75278 0.86457 0.87529 0.89082 0.91021 0.74235 0.76490 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.32 71.98 0.67 -1.64 16 2 C 0.14 2.10 3.18 45.10 0.14 2.24 16 3 H 0.11 1.23 8.13 -2.39 -0.02 1.21 16 4 N -0.70 -11.43 5.12 -446.64 -2.29 -13.72 16 5 C 0.52 11.43 7.71 87.71 0.68 12.11 16 6 O -0.60 -18.03 17.78 -3.03 -0.05 -18.08 16 7 C -0.13 -2.39 6.03 29.70 0.18 -2.21 16 8 C -0.13 -2.64 5.62 30.73 0.17 -2.47 16 9 C 0.13 2.86 1.87 45.08 0.08 2.95 16 10 H 0.09 2.17 7.56 -2.39 -0.02 2.15 16 11 N -0.68 -18.73 4.72 -444.03 -2.09 -20.82 16 12 C 0.53 20.35 7.84 87.08 0.68 21.04 16 13 O -0.56 -23.81 16.14 -3.51 -0.06 -23.86 16 14 C 0.39 18.56 7.82 87.08 0.68 19.24 16 15 O -0.61 -30.88 16.03 -3.72 -0.06 -30.94 16 16 N -0.51 -26.67 5.25 -308.87 -1.62 -28.29 16 17 C -0.34 -18.55 9.67 84.36 0.82 -17.73 16 18 H 0.10 5.53 7.15 -2.91 -0.02 5.51 16 19 C 0.00 -0.21 5.51 85.14 0.47 0.26 16 20 N -0.90 -46.84 13.03 21.77 0.28 -46.56 16 21 Si 1.01 39.51 29.56 68.60 2.03 41.54 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 23 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 24 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 25 H 0.07 1.19 7.88 -2.39 -0.02 1.17 16 26 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.41 5.67 8.66 -92.71 -0.80 4.86 16 29 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.09 1.54 8.13 -2.39 -0.02 1.52 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.42 10.39 8.05 -92.71 -0.75 9.65 16 34 H 0.40 21.18 7.35 -92.71 -0.68 20.50 16 35 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 Total: -1.00 -67.80 305.43 -0.36 -68.16 By element: Atomic # 1 Polarization: 39.85 SS G_CDS: -1.07 Total: 38.78 kcal Atomic # 6 Polarization: 29.21 SS G_CDS: 4.58 Total: 33.78 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -5.72 Total: -109.39 kcal Atomic # 8 Polarization: -72.71 SS G_CDS: -0.17 Total: -72.88 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -67.80 -0.36 -68.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393535417.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.573 kcal (2) G-P(sol) polarization free energy of solvation -67.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds