Wall clock time and date at job start Mon Mar 30 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.13373 * 2 1 4 4 N 1.45823 * 109.46201 * 119.42753 * 2 1 3 5 5 C 1.33353 * 124.16834 * 139.13950 * 4 2 1 6 6 O 1.21278 * 118.24731 * 177.93620 * 5 4 2 7 7 C 1.50182 * 123.50674 * 357.95607 * 5 4 2 8 8 C 1.53068 * 109.89136 * 17.58684 * 7 5 4 9 9 C 1.52925 * 109.30196 * 240.51986 * 2 1 3 10 10 H 1.09007 * 109.59832 * 308.85631 * 9 2 1 11 11 N 1.46502 * 109.60284 * 69.17602 * 9 2 1 12 12 C 1.34779 * 119.99726 * 204.67974 * 11 9 2 13 13 O 1.21434 * 120.00248 * 0.02562 * 12 11 9 14 14 C 1.48830 * 119.99732 * 180.02562 * 12 11 9 15 15 O 1.21507 * 120.00192 * 359.97438 * 14 12 11 16 16 N 1.34779 * 120.00140 * 179.97438 * 14 12 11 17 17 C 1.36114 * 120.00161 * 179.97438 * 16 14 12 18 18 H 1.08003 * 120.00161 * 0.02562 * 17 16 14 19 19 C 1.39587 * 120.00133 * 179.97438 * 17 16 14 20 20 N 1.31014 * 120.00294 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99706 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99592 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99773 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99766 * 21 19 17 25 25 H 1.09001 * 109.47142 * 179.48643 * 1 2 3 26 26 H 1.09009 * 109.46990 * 299.48337 * 1 2 3 27 27 H 1.09003 * 109.47277 * 59.47956 * 1 2 3 28 28 H 0.96995 * 117.88245 * 319.32391 * 4 2 1 29 29 H 1.08993 * 109.39922 * 257.45502 * 7 5 4 30 30 H 1.09001 * 109.39778 * 137.71387 * 7 5 4 31 31 H 1.09003 * 109.67022 * 191.36824 * 8 7 5 32 32 H 1.08993 * 109.70623 * 70.84856 * 8 7 5 33 33 H 0.96993 * 119.99985 * 24.67942 * 11 9 2 34 34 H 0.97001 * 119.99591 * 0.02562 * 16 14 12 35 35 H 0.96998 * 120.00220 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8872 1.0298 0.0000 4 7 2.0158 -0.6755 1.1975 5 6 3.0521 -1.5146 1.2158 6 8 3.3886 -1.9880 2.2804 7 6 3.8251 -1.9042 -0.0115 8 6 3.5519 -0.9048 -1.1382 9 6 2.0354 -0.7103 -1.2564 10 1 1.5482 -1.6810 -1.3487 11 7 1.7348 0.1046 -2.4362 12 6 1.6163 -0.4786 -3.6455 13 8 1.7582 -1.6794 -3.7571 14 6 1.3115 0.3493 -4.8442 15 8 1.1691 1.5508 -4.7325 16 7 1.1935 -0.2337 -6.0536 17 6 0.9142 0.5233 -7.1498 18 1 0.7876 1.5913 -7.0505 19 6 0.7925 -0.0804 -8.4024 20 7 0.5242 0.6483 -9.4576 21 14 1.0122 -1.9275 -8.5742 22 1 2.4406 -2.2334 -8.8415 23 1 0.1808 -2.4222 -9.7009 24 1 0.5898 -2.5953 -7.3169 25 1 -0.3633 -1.0276 -0.0092 26 1 -0.3633 0.5058 0.8947 27 1 -0.3634 0.5219 -0.8853 28 1 1.5539 -0.5054 2.0333 29 1 3.5203 -2.9011 -0.3300 30 1 4.8906 -1.9087 0.2180 31 1 3.9462 -1.2935 -2.0771 32 1 4.0271 0.0485 -0.9072 33 1 1.6211 1.0637 -2.3471 34 1 1.3068 -1.1930 -6.1427 35 1 0.4400 0.2288 -10.3281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393535419.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:47 Heat of formation + Delta-G solvation = -111.397069 kcal Electronic energy + Delta-G solvation = -20605.956594 eV Core-core repulsion = 17217.737458 eV Total energy + Delta-G solvation = -3388.219136 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.85010 -39.62530 -37.83031 -36.88821 -34.67264 -33.97617 -32.93100 -31.96702 -30.58628 -27.25605 -25.84574 -23.67064 -22.99138 -21.88898 -20.05829 -19.42926 -18.94440 -17.50512 -16.96562 -16.44350 -16.03936 -15.56709 -15.26643 -14.97806 -14.62907 -14.55769 -14.15467 -13.58458 -13.37727 -12.98317 -12.95016 -12.92963 -12.53191 -12.45768 -12.10174 -11.82754 -11.42953 -11.33668 -11.19013 -10.82918 -10.65348 -10.17863 -9.98098 -9.84580 -9.40032 -9.08023 -8.53501 -8.49746 -6.66354 -4.07965 2.15287 2.41993 2.75418 2.98966 3.02050 3.05491 3.25344 3.88920 4.01749 4.16360 4.31363 4.44126 4.58116 4.71820 4.88841 4.96210 5.04367 5.07704 5.32676 5.40475 5.52035 5.56604 5.62341 5.79844 5.83657 5.94287 6.43912 6.49351 7.04541 7.17415 7.47593 7.82852 7.95880 8.12381 8.39525 8.65310 9.10862 9.52529 10.43387 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.036147 B = 0.004190 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.424100 B = 6680.965561 C = 7084.239264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.131 3.869 3 H 0.084 0.916 4 N -0.711 5.711 5 C 0.521 3.479 6 O -0.560 6.560 7 C -0.132 4.132 8 C -0.138 4.138 9 C 0.136 3.864 10 H 0.100 0.900 11 N -0.705 5.705 12 C 0.518 3.482 13 O -0.546 6.546 14 C 0.401 3.599 15 O -0.579 6.579 16 N -0.524 5.524 17 C -0.309 4.309 18 H 0.128 0.872 19 C 0.053 3.947 20 N -0.846 5.846 21 Si 0.876 3.124 22 H -0.263 1.263 23 H -0.270 1.270 24 H -0.259 1.259 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.401 0.599 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.413 0.587 34 H 0.384 0.616 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.199 -3.234 15.537 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.025 3.975 3 H 0.102 0.898 4 N -0.364 5.364 5 C 0.308 3.692 6 O -0.439 6.439 7 C -0.172 4.172 8 C -0.176 4.176 9 C 0.030 3.970 10 H 0.117 0.883 11 N -0.359 5.359 12 C 0.303 3.697 13 O -0.423 6.423 14 C 0.186 3.814 15 O -0.466 6.466 16 N -0.160 5.160 17 C -0.439 4.439 18 H 0.146 0.854 19 C -0.155 4.155 20 N -0.483 5.483 21 Si 0.701 3.299 22 H -0.188 1.188 23 H -0.195 1.195 24 H -0.184 1.184 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.237 0.763 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.249 0.751 34 H 0.219 0.781 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.457 -3.585 15.612 16.205 hybrid contribution -0.178 -0.789 -0.061 0.811 sum 2.279 -4.373 15.551 16.314 Atomic orbital electron populations 1.22206 0.93282 1.03483 1.03523 1.21146 0.95452 0.96513 0.84360 0.89823 1.45548 1.32666 1.46605 1.11630 1.20295 0.80002 0.77686 0.91170 1.90758 1.67425 1.53968 1.31765 1.21612 1.01733 1.01449 0.92435 1.22131 0.95945 0.99944 0.99625 1.21140 0.95574 0.96284 0.83994 0.88252 1.45515 1.72462 1.12095 1.05858 1.20666 0.76388 0.87830 0.84823 1.90689 1.50245 1.15225 1.86102 1.18745 0.90927 0.88094 0.83654 1.90632 1.57294 1.13880 1.84765 1.41832 1.57492 1.09973 1.06746 1.19570 1.45252 0.95487 0.83549 0.85428 1.25247 0.96074 0.99289 0.94926 1.69436 1.42439 1.36775 0.99640 0.86675 0.79847 0.83929 0.79495 1.18832 1.19471 1.18425 0.91604 0.91616 0.90015 0.76299 0.87747 0.87698 0.89384 0.90637 0.75057 0.78138 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 9.32 37.15 0.35 -0.95 16 2 C 0.13 1.09 3.19 -68.34 -0.22 0.87 16 3 H 0.08 0.61 8.13 -51.93 -0.42 0.19 16 4 N -0.71 -6.36 5.13 -54.81 -0.28 -6.64 16 5 C 0.52 5.91 7.71 -11.87 -0.09 5.81 16 6 O -0.56 -8.47 17.78 5.56 0.10 -8.37 16 7 C -0.13 -1.27 6.03 -28.10 -0.17 -1.44 16 8 C -0.14 -1.40 5.62 -26.52 -0.15 -1.55 16 9 C 0.14 1.49 1.87 -67.79 -0.13 1.36 16 10 H 0.10 1.22 7.55 -51.93 -0.39 0.83 16 11 N -0.71 -9.59 4.71 -54.30 -0.26 -9.85 16 12 C 0.52 9.51 7.84 -11.87 -0.09 9.42 16 13 O -0.55 -10.76 16.13 5.42 0.09 -10.67 16 14 C 0.40 9.03 7.82 -11.87 -0.09 8.94 16 15 O -0.58 -14.29 16.03 5.36 0.09 -14.21 16 16 N -0.52 -12.54 5.06 -11.59 -0.06 -12.60 16 17 C -0.31 -8.29 10.16 -15.15 -0.15 -8.45 16 18 H 0.13 3.83 7.37 -52.48 -0.39 3.44 16 19 C 0.05 1.38 5.51 -17.40 -0.10 1.28 16 20 N -0.85 -22.84 13.94 55.53 0.77 -22.07 16 21 Si 0.88 18.64 27.74 -169.99 -4.72 13.92 16 22 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.26 -5.33 6.53 56.52 0.37 -4.96 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 27 H 0.08 0.71 7.88 -51.93 -0.41 0.30 16 28 H 0.40 3.13 8.67 -40.82 -0.35 2.78 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 33 H 0.41 5.21 8.05 -40.82 -0.33 4.89 16 34 H 0.38 8.63 5.22 -40.82 -0.21 8.41 16 35 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 LS Contribution 302.35 15.07 4.56 4.56 Total: -1.00 -31.67 302.35 -4.76 -36.43 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -4.21 Total: 14.19 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: -0.84 Total: 15.30 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.18 Total: -51.15 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: 0.27 Total: -33.25 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.72 Total: 13.92 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.67 -4.76 -36.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393535419.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.966 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds