Wall clock time and date at job start Mon Mar 30 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.13373 * 2 1 4 4 N 1.45823 * 109.46201 * 119.42753 * 2 1 3 5 5 C 1.33353 * 124.16834 * 139.13950 * 4 2 1 6 6 O 1.21278 * 118.24731 * 177.93620 * 5 4 2 7 7 C 1.50182 * 123.50674 * 357.95607 * 5 4 2 8 8 C 1.53068 * 109.89136 * 17.58684 * 7 5 4 9 9 C 1.52925 * 109.30196 * 240.51986 * 2 1 3 10 10 H 1.09007 * 109.59832 * 308.85631 * 9 2 1 11 11 N 1.46502 * 109.60284 * 69.17602 * 9 2 1 12 12 C 1.34779 * 119.99726 * 204.67974 * 11 9 2 13 13 O 1.21434 * 120.00248 * 0.02562 * 12 11 9 14 14 C 1.48830 * 119.99732 * 180.02562 * 12 11 9 15 15 O 1.21507 * 120.00192 * 359.97438 * 14 12 11 16 16 N 1.34779 * 120.00140 * 179.97438 * 14 12 11 17 17 C 1.36114 * 120.00161 * 179.97438 * 16 14 12 18 18 H 1.08003 * 120.00161 * 0.02562 * 17 16 14 19 19 C 1.39587 * 120.00133 * 179.97438 * 17 16 14 20 20 N 1.31014 * 120.00294 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99706 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99592 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99773 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99766 * 21 19 17 25 25 H 1.09001 * 109.47142 * 179.48643 * 1 2 3 26 26 H 1.09009 * 109.46990 * 299.48337 * 1 2 3 27 27 H 1.09003 * 109.47277 * 59.47956 * 1 2 3 28 28 H 0.96995 * 117.88245 * 319.32391 * 4 2 1 29 29 H 1.08993 * 109.39922 * 257.45502 * 7 5 4 30 30 H 1.09001 * 109.39778 * 137.71387 * 7 5 4 31 31 H 1.09003 * 109.67022 * 191.36824 * 8 7 5 32 32 H 1.08993 * 109.70623 * 70.84856 * 8 7 5 33 33 H 0.96993 * 119.99985 * 24.67942 * 11 9 2 34 34 H 0.97001 * 119.99591 * 0.02562 * 16 14 12 35 35 H 0.96998 * 120.00220 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8872 1.0298 0.0000 4 7 2.0158 -0.6755 1.1975 5 6 3.0521 -1.5146 1.2158 6 8 3.3886 -1.9880 2.2804 7 6 3.8251 -1.9042 -0.0115 8 6 3.5519 -0.9048 -1.1382 9 6 2.0354 -0.7103 -1.2564 10 1 1.5482 -1.6810 -1.3487 11 7 1.7348 0.1046 -2.4362 12 6 1.6163 -0.4786 -3.6455 13 8 1.7582 -1.6794 -3.7571 14 6 1.3115 0.3493 -4.8442 15 8 1.1691 1.5508 -4.7325 16 7 1.1935 -0.2337 -6.0536 17 6 0.9142 0.5233 -7.1498 18 1 0.7876 1.5913 -7.0505 19 6 0.7925 -0.0804 -8.4024 20 7 0.5242 0.6483 -9.4576 21 14 1.0122 -1.9275 -8.5742 22 1 2.4406 -2.2334 -8.8415 23 1 0.1808 -2.4222 -9.7009 24 1 0.5898 -2.5953 -7.3169 25 1 -0.3633 -1.0276 -0.0092 26 1 -0.3633 0.5058 0.8947 27 1 -0.3634 0.5219 -0.8853 28 1 1.5539 -0.5054 2.0333 29 1 3.5203 -2.9011 -0.3300 30 1 4.8906 -1.9087 0.2180 31 1 3.9462 -1.2935 -2.0771 32 1 4.0271 0.0485 -0.9072 33 1 1.6211 1.0637 -2.3471 34 1 1.3068 -1.1930 -6.1427 35 1 0.4400 0.2288 -10.3281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393535419.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:47 Heat of formation + Delta-G solvation = -138.021726 kcal Electronic energy + Delta-G solvation = -20607.111126 eV Core-core repulsion = 17217.737458 eV Total energy + Delta-G solvation = -3389.373667 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.90107 -41.04259 -39.38111 -38.11084 -36.42500 -35.21923 -33.99889 -33.77332 -31.48437 -28.46659 -27.41282 -24.85528 -24.02748 -22.98647 -21.39828 -21.09660 -20.31302 -18.67253 -18.37811 -17.66759 -17.20864 -16.88049 -16.56612 -16.47618 -15.89882 -15.55615 -15.35190 -15.00270 -14.71290 -14.64868 -14.39192 -14.13658 -13.71084 -13.29835 -13.08519 -13.00137 -12.63920 -12.53880 -12.44419 -12.24728 -12.01621 -11.97726 -11.68886 -10.91656 -10.45774 -10.34181 -10.27041 -10.20178 -8.60692 -6.14562 0.52972 1.30723 1.34532 1.39838 1.54040 1.56784 2.11441 2.25622 2.32240 3.03953 3.09394 3.33311 3.51563 3.65434 3.81353 3.88569 4.14682 4.20350 4.29498 4.52541 4.74093 4.83096 4.89729 4.96952 5.04232 5.20947 5.28043 5.29186 5.75122 5.76690 6.06928 6.22925 6.37972 6.61012 6.91389 7.12841 7.16864 7.64271 8.53692 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.036147 B = 0.004190 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.424100 B = 6680.965561 C = 7084.239264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 H 0.106 0.894 4 N -0.699 5.699 5 C 0.520 3.480 6 O -0.602 6.602 7 C -0.126 4.126 8 C -0.132 4.132 9 C 0.132 3.868 10 H 0.091 0.909 11 N -0.681 5.681 12 C 0.531 3.469 13 O -0.554 6.554 14 C 0.407 3.593 15 O -0.601 6.601 16 N -0.533 5.533 17 C -0.338 4.338 18 H 0.079 0.921 19 C 0.011 3.989 20 N -0.893 5.893 21 Si 0.947 3.053 22 H -0.253 1.253 23 H -0.260 1.260 24 H -0.246 1.246 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.409 0.591 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.420 0.580 34 H 0.393 0.607 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.578 -4.533 17.200 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.033 3.967 3 H 0.123 0.877 4 N -0.351 5.351 5 C 0.308 3.692 6 O -0.484 6.484 7 C -0.166 4.166 8 C -0.171 4.171 9 C 0.027 3.973 10 H 0.109 0.891 11 N -0.334 5.334 12 C 0.313 3.687 13 O -0.432 6.432 14 C 0.192 3.808 15 O -0.488 6.488 16 N -0.171 5.171 17 C -0.467 4.467 18 H 0.097 0.903 19 C -0.194 4.194 20 N -0.530 5.530 21 Si 0.766 3.234 22 H -0.177 1.177 23 H -0.184 1.184 24 H -0.170 1.170 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.246 0.754 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.258 0.742 34 H 0.229 0.771 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.817 -4.838 17.295 18.178 hybrid contribution -0.304 -0.248 -0.400 0.560 sum 2.513 -5.086 16.895 17.822 Atomic orbital electron populations 1.22203 0.92522 1.03363 1.04279 1.21145 0.95904 0.96921 0.82696 0.87660 1.45463 1.31840 1.45652 1.12153 1.20540 0.80225 0.77451 0.90962 1.90749 1.68750 1.55684 1.33212 1.21586 1.02304 1.01379 0.91330 1.22075 0.94947 1.00822 0.99267 1.21363 0.96497 0.95733 0.83690 0.89098 1.45382 1.70167 1.12703 1.05145 1.19771 0.77066 0.87044 0.84826 1.90699 1.51057 1.15218 1.86262 1.19642 0.88248 0.88249 0.84635 1.90618 1.57194 1.15410 1.85576 1.41701 1.58753 1.10136 1.06521 1.19162 1.48192 0.93887 0.85492 0.90297 1.26064 0.94907 1.04563 0.93845 1.69546 1.43811 1.39237 1.00453 0.85610 0.80422 0.77132 0.80194 1.17667 1.18401 1.17003 0.92178 0.89433 0.90767 0.75357 0.87320 0.86524 0.90590 0.89199 0.74156 0.77108 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 9.32 71.98 0.67 -1.40 16 2 C 0.14 1.86 3.19 45.09 0.14 2.00 16 3 H 0.11 1.08 8.13 -2.39 -0.02 1.06 16 4 N -0.70 -10.48 5.13 -446.50 -2.29 -12.77 16 5 C 0.52 10.62 7.71 87.72 0.68 11.29 16 6 O -0.60 -17.32 17.78 -3.02 -0.05 -17.37 16 7 C -0.13 -2.11 6.03 29.71 0.18 -1.93 16 8 C -0.13 -2.32 5.62 30.73 0.17 -2.15 16 9 C 0.13 2.52 1.87 45.08 0.08 2.61 16 10 H 0.09 2.00 7.55 -2.38 -0.02 1.98 16 11 N -0.68 -16.90 4.71 -444.02 -2.09 -18.99 16 12 C 0.53 18.55 7.84 87.08 0.68 19.23 16 13 O -0.55 -20.67 16.13 -3.51 -0.06 -20.73 16 14 C 0.41 18.24 7.82 87.08 0.68 18.92 16 15 O -0.60 -29.90 16.03 -3.74 -0.06 -29.96 16 16 N -0.53 -25.60 5.06 -308.87 -1.56 -27.16 16 17 C -0.34 -18.78 10.16 84.35 0.86 -17.92 16 18 H 0.08 5.05 7.37 -2.91 -0.02 5.03 16 19 C 0.01 0.59 5.51 85.14 0.47 1.06 16 20 N -0.89 -49.63 13.94 21.77 0.30 -49.33 16 21 Si 0.95 37.95 27.74 68.60 1.90 39.85 16 22 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 23 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 24 H -0.25 -9.23 6.53 99.48 0.65 -8.59 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.07 1.08 7.88 -2.39 -0.02 1.07 16 28 H 0.41 5.22 8.67 -92.71 -0.80 4.42 16 29 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 1.34 8.13 -2.39 -0.02 1.32 16 33 H 0.42 9.54 8.05 -92.71 -0.75 8.79 16 34 H 0.39 17.25 5.22 -92.71 -0.48 16.76 16 35 H 0.29 14.54 8.30 -92.71 -0.77 13.77 16 Total: -1.00 -70.52 302.35 -0.23 -70.74 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -0.93 Total: 34.01 kcal Atomic # 6 Polarization: 27.09 SS G_CDS: 4.62 Total: 31.71 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -5.64 Total: -108.25 kcal Atomic # 8 Polarization: -67.89 SS G_CDS: -0.17 Total: -68.06 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 1.90 Total: 39.85 kcal Total: -70.52 -0.23 -70.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393535419.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.279 kcal (2) G-P(sol) polarization free energy of solvation -70.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds