Wall clock time and date at job start Mon Mar 30 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86798 * 119.99865 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99916 * 3 2 1 5 5 H 1.48503 * 109.47261 * 150.00097 * 3 2 1 6 6 H 1.48500 * 109.47454 * 30.00090 * 3 2 1 7 7 C 1.39585 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00064 * 359.97438 * 7 2 1 9 9 N 1.36125 * 119.99569 * 179.97438 * 7 2 1 10 10 C 1.34774 * 119.99619 * 179.97438 * 9 7 2 11 11 O 1.21504 * 120.00280 * 0.02562 * 10 9 7 12 12 C 1.48837 * 119.99840 * 179.97438 * 10 9 7 13 13 O 1.21434 * 120.00049 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99840 * 179.97438 * 12 10 9 15 15 C 1.46499 * 120.00002 * 180.02562 * 14 12 10 16 16 H 1.09001 * 108.56605 * 322.94216 * 15 14 12 17 17 C 1.51779 * 108.61445 * 80.74131 * 15 14 12 18 18 C 1.53031 * 110.87264 * 188.12443 * 17 15 14 19 19 N 1.47192 * 108.64162 * 273.52561 * 18 17 15 20 20 C 1.33374 * 120.43108 * 71.99193 * 19 18 17 21 21 O 1.21277 * 119.89474 * 179.69879 * 20 19 18 22 22 C 1.51420 * 120.21320 * 359.67874 * 20 19 18 23 23 C 1.51791 * 108.61802 * 205.00341 * 15 14 12 24 24 H 0.97004 * 119.99929 * 359.97438 * 1 2 3 25 25 H 0.97001 * 120.00020 * 0.02562 * 9 7 2 26 26 H 0.97001 * 120.00361 * 0.02562 * 14 12 10 27 27 H 1.09002 * 109.19442 * 308.47439 * 17 15 14 28 28 H 1.08995 * 109.19545 * 67.75792 * 17 15 14 29 29 H 1.09003 * 109.61967 * 153.77681 * 18 17 15 30 30 H 1.09001 * 109.74964 * 33.35649 * 18 17 15 31 31 H 0.97001 * 119.78426 * 251.96721 * 19 18 17 32 32 H 1.09001 * 109.63904 * 169.08180 * 22 20 19 33 33 H 1.09000 * 109.63767 * 48.47965 * 22 20 19 34 34 H 1.08998 * 109.22056 * 292.39070 * 23 15 14 35 35 H 1.09002 * 109.22575 * 51.74233 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4916 2.0465 -1.4001 5 1 3.5417 1.4402 0.7000 6 1 1.4416 2.6527 0.7000 7 6 2.0080 -1.2089 -0.0005 8 1 1.4680 -2.1441 -0.0005 9 7 3.3693 -1.2088 -0.0011 10 6 4.0431 -2.3760 -0.0011 11 8 3.4356 -3.4283 -0.0011 12 6 5.5315 -2.3760 -0.0022 13 8 6.1387 -1.3243 -0.0027 14 7 6.2053 -3.5432 -0.0017 15 6 7.6703 -3.5432 -0.0023 16 1 8.0171 -2.7191 -0.6256 17 6 8.1553 -3.3108 1.4170 18 6 9.6709 -3.1010 1.4478 19 7 10.3264 -4.4162 1.5327 20 6 10.3389 -5.2340 0.4792 21 8 10.8865 -6.3132 0.5582 22 6 9.6712 -4.8195 -0.8151 23 6 8.1546 -4.8473 -0.6096 24 1 -0.4850 0.8401 0.0004 25 1 3.8542 -0.3687 -0.0007 26 1 5.7203 -4.3833 -0.0009 27 1 7.6629 -2.4276 1.8239 28 1 7.9007 -4.1761 2.0290 29 1 9.9398 -2.5015 2.3176 30 1 9.9906 -2.5909 0.5392 31 1 10.7523 -4.6897 2.3602 32 1 9.9460 -5.5150 -1.6082 33 1 9.9860 -3.8110 -1.0831 34 1 7.8979 -5.6707 0.0569 35 1 7.6649 -4.9990 -1.5715 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396630098.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:27 Heat of formation + Delta-G solvation = -110.977155 kcal Electronic energy + Delta-G solvation = -20481.691127 eV Core-core repulsion = 17093.490200 eV Total energy + Delta-G solvation = -3388.200927 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.65001 -39.63472 -37.79446 -36.71672 -35.01815 -34.26624 -32.55818 -31.90737 -30.78163 -26.93901 -25.69425 -24.33646 -22.71788 -20.84934 -20.13760 -19.49773 -19.00762 -17.61925 -17.15259 -16.90301 -16.10990 -15.38851 -15.16123 -14.88170 -14.82579 -14.32862 -13.95161 -13.85329 -13.49572 -13.01191 -12.89357 -12.64685 -12.53653 -12.48591 -12.11390 -11.79269 -11.35021 -11.25506 -11.02046 -10.79163 -10.62157 -10.15463 -10.02987 -9.82245 -9.46490 -8.98527 -8.48343 -8.47031 -6.63719 -4.05409 2.20290 2.41101 2.99560 3.02465 3.03605 3.05639 3.13621 3.90737 4.06397 4.18482 4.36262 4.50737 4.58059 4.82415 4.86465 5.04211 5.07401 5.08711 5.14883 5.30330 5.41617 5.62075 5.67718 5.68797 5.87586 6.02403 6.51610 6.56190 6.97451 7.20625 7.55753 7.86335 7.98112 8.16979 8.43736 8.68668 9.13858 9.55917 10.46246 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042738 B = 0.003885 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.995329 B = 7205.753897 C = 7570.538609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.053 3.947 3 Si 0.877 3.123 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.270 1.270 7 C -0.309 4.309 8 H 0.128 0.872 9 N -0.526 5.526 10 C 0.401 3.599 11 O -0.579 6.579 12 C 0.516 3.484 13 O -0.550 6.550 14 N -0.711 5.711 15 C 0.144 3.856 16 H 0.087 0.913 17 C -0.155 4.155 18 C 0.112 3.888 19 N -0.724 5.724 20 C 0.518 3.482 21 O -0.555 6.555 22 C -0.134 4.134 23 C -0.122 4.122 24 H 0.282 0.718 25 H 0.384 0.616 26 H 0.412 0.588 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.400 0.600 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.190 -2.873 1.071 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.156 4.156 3 Si 0.701 3.299 4 H -0.189 1.189 5 H -0.185 1.185 6 H -0.195 1.195 7 C -0.439 4.439 8 H 0.145 0.855 9 N -0.162 5.162 10 C 0.186 3.814 11 O -0.465 6.465 12 C 0.301 3.699 13 O -0.427 6.427 14 N -0.364 5.364 15 C 0.039 3.961 16 H 0.105 0.895 17 C -0.194 4.194 18 C -0.013 4.013 19 N -0.376 5.376 20 C 0.305 3.695 21 O -0.434 6.434 22 C -0.175 4.175 23 C -0.161 4.161 24 H 0.093 0.907 25 H 0.218 0.782 26 H 0.248 0.752 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.236 0.764 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 18.191 -3.177 0.910 18.489 hybrid contribution 0.343 0.955 0.421 1.099 sum 18.534 -2.222 1.331 18.714 Atomic orbital electron populations 1.69442 1.06144 1.28713 1.44177 1.25246 0.95554 0.98630 0.96163 0.86665 0.80385 0.83007 0.79805 1.18869 1.18451 1.19517 1.19569 0.79135 0.97100 1.48082 0.85492 1.41830 1.07577 1.06927 1.59906 1.18838 0.86442 0.85300 0.90835 1.90632 1.68736 1.30335 1.56836 1.20646 0.89848 0.83552 0.75874 1.90667 1.70851 1.31306 1.49884 1.45808 1.05998 1.09586 1.75039 1.20635 0.80477 0.98468 0.96481 0.89451 1.22272 0.95434 1.04129 0.97604 1.21741 0.91870 0.83783 1.03866 1.46025 1.57782 1.18598 1.15200 1.20599 0.78922 0.83928 0.86089 1.90755 1.45648 1.22665 1.84304 1.21914 0.95457 1.04498 0.95609 1.21505 0.94014 0.97560 1.02996 0.90721 0.78164 0.75222 0.89344 0.90717 0.89013 0.90107 0.76417 0.87855 0.88813 0.90660 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.16 13.94 55.53 0.77 -22.39 16 2 C 0.05 1.37 5.51 -17.40 -0.10 1.28 16 3 Si 0.88 18.78 27.74 -169.99 -4.72 14.06 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.26 -5.35 6.53 56.52 0.37 -4.98 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.31 -8.44 10.16 -15.14 -0.15 -8.59 16 8 H 0.13 3.88 7.36 -52.49 -0.39 3.49 16 9 N -0.53 -12.81 5.06 -11.59 -0.06 -12.87 16 10 C 0.40 9.30 7.82 -11.87 -0.09 9.21 16 11 O -0.58 -14.82 16.03 5.36 0.09 -14.73 16 12 C 0.52 9.74 7.61 -11.87 -0.09 9.65 16 13 O -0.55 -10.85 15.77 5.42 0.09 -10.77 16 14 N -0.71 -10.28 5.02 -55.64 -0.28 -10.56 16 15 C 0.14 1.56 1.96 -69.16 -0.14 1.42 16 16 H 0.09 0.98 7.33 -51.93 -0.38 0.60 16 17 C -0.15 -1.49 5.22 -27.33 -0.14 -1.63 16 18 C 0.11 0.77 6.46 -3.65 -0.02 0.75 16 19 N -0.72 -5.80 5.27 -59.88 -0.32 -6.11 16 20 C 0.52 5.43 7.06 -11.25 -0.08 5.35 16 21 O -0.56 -8.17 17.92 5.56 0.10 -8.07 16 22 C -0.13 -1.09 5.57 -27.50 -0.15 -1.24 16 23 C -0.12 -1.08 5.06 -27.31 -0.14 -1.22 16 24 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 25 H 0.38 8.73 5.22 -40.82 -0.21 8.52 16 26 H 0.41 5.79 8.02 -40.82 -0.33 5.46 16 27 H 0.09 1.02 7.59 -51.93 -0.39 0.62 16 28 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.50 6.72 -51.93 -0.35 0.15 16 31 H 0.40 2.83 8.91 -40.82 -0.36 2.46 16 32 H 0.10 0.80 8.13 -51.93 -0.42 0.37 16 33 H 0.09 0.60 6.77 -51.93 -0.35 0.25 16 34 H 0.07 0.70 7.86 -51.93 -0.41 0.30 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 296.49 15.07 4.47 4.47 Total: -1.00 -32.79 296.49 -4.99 -37.77 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -4.03 Total: 14.23 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: -1.11 Total: 14.96 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.12 Total: -51.93 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: 0.27 Total: -33.57 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.72 Total: 14.06 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.79 -4.99 -37.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396630098.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.203 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds