Wall clock time and date at job start Mon Mar 30 2020 05:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99996 * 2 1 4 4 H 1.48495 * 109.47548 * 274.97759 * 3 2 1 5 5 H 1.48501 * 109.46850 * 34.98006 * 3 2 1 6 6 H 1.48506 * 109.46967 * 154.97853 * 3 2 1 7 7 C 1.37874 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00432 * 188.86598 * 7 2 1 9 9 C 1.50707 * 120.00092 * 8.86007 * 7 2 1 10 10 H 1.09000 * 110.27035 * 307.36656 * 9 7 2 11 11 C 1.54596 * 110.39281 * 69.51555 * 9 7 2 12 12 C 1.54929 * 102.92329 * 140.91596 * 11 9 7 13 13 N 1.48535 * 103.22703 * 322.58806 * 12 11 9 14 14 C 1.46898 * 110.99955 * 159.72096 * 13 12 11 15 15 C 1.52999 * 109.47473 * 52.60104 * 14 13 12 16 16 N 1.46496 * 109.47609 * 179.97438 * 15 14 13 17 17 C 1.35049 * 126.03606 * 124.99275 * 16 15 14 18 18 C 1.35378 * 107.72763 * 179.79144 * 17 16 15 19 19 Cl 1.73595 * 126.04934 * 180.22925 * 18 17 16 20 20 C 1.39931 * 107.90726 * 0.37539 * 18 17 16 21 21 N 1.30853 * 108.20991 * 359.62088 * 20 18 17 22 22 C 1.47901 * 105.82312 * 39.20629 * 13 12 11 23 23 H 0.96996 * 119.99961 * 359.97438 * 1 2 3 24 24 H 1.09005 * 110.71937 * 259.28129 * 11 9 7 25 25 H 1.09006 * 110.72453 * 22.37667 * 11 9 7 26 26 H 1.09003 * 110.67003 * 204.14883 * 12 11 9 27 27 H 1.09001 * 110.66595 * 81.01810 * 12 11 9 28 28 H 1.08998 * 109.47244 * 292.59949 * 14 13 12 29 29 H 1.08999 * 109.47017 * 172.60064 * 14 13 12 30 30 H 1.08998 * 109.47012 * 59.99703 * 15 14 13 31 31 H 1.09007 * 109.46759 * 300.00223 * 15 14 13 32 32 H 1.08002 * 126.13828 * 0.03460 * 17 16 15 33 33 H 1.07999 * 125.89519 * 179.89126 * 20 18 17 34 34 H 1.08995 * 109.91503 * 94.01907 * 22 13 12 35 35 H 1.08997 * 109.91611 * 215.12040 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3915 2.1072 -1.3947 5 1 1.5031 2.6199 0.8027 6 1 3.5954 1.4120 0.5922 7 6 2.0046 -1.1940 -0.0005 8 1 3.0749 -1.1997 0.1436 9 6 1.2645 -2.4913 -0.2021 10 1 0.4365 -2.5672 0.5026 11 6 0.7445 -2.5948 -1.6543 12 6 0.9727 -4.0881 -1.9985 13 7 2.2605 -4.3987 -1.3267 14 6 2.4139 -5.8458 -1.1259 15 6 2.2004 -6.5708 -2.4562 16 7 2.3540 -8.0139 -2.2561 17 6 1.4471 -8.9615 -2.5778 18 6 1.9693 -10.1637 -2.2390 19 17 1.2032 -11.7069 -2.4518 20 6 3.2345 -9.9422 -1.6838 21 7 3.4670 -8.6546 -1.6967 22 6 2.2224 -3.6851 -0.0318 23 1 -0.4850 0.8400 0.0004 24 1 -0.3154 -2.3452 -1.7031 25 1 1.3219 -1.9507 -2.3176 26 1 1.0580 -4.2258 -3.0764 27 1 0.1693 -4.7033 -1.5933 28 1 1.6772 -6.1922 -0.4011 29 1 3.4165 -6.0568 -0.7540 30 1 2.9371 -6.2245 -3.1810 31 1 1.1977 -6.3598 -2.8281 32 1 0.4805 -8.7912 -3.0285 33 1 3.9054 -10.7031 -1.3132 34 1 1.8517 -4.3503 0.7479 35 1 3.2202 -3.3305 0.2262 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397589248.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:03 Heat of formation + Delta-G solvation = 75.264830 kcal Electronic energy + Delta-G solvation = -17794.538016 eV Core-core repulsion = 14855.122312 eV Total energy + Delta-G solvation = -2939.415704 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.44372 -38.37192 -36.61294 -34.47762 -32.74898 -30.92272 -29.99532 -28.39412 -27.41271 -24.37398 -23.20980 -21.41102 -21.14205 -19.98396 -19.48988 -17.51539 -16.59932 -15.81502 -15.38625 -14.92284 -14.57733 -14.42219 -14.18384 -13.67971 -13.52369 -13.04585 -12.69871 -12.27466 -12.01309 -11.75483 -11.62306 -11.23364 -11.12410 -10.96851 -10.74628 -10.60473 -10.57715 -10.34063 -9.78909 -9.75061 -9.34700 -8.90914 -8.61319 -8.42098 -7.92627 -6.06412 -4.06226 1.54728 1.76672 2.39010 2.60646 3.29594 3.36970 3.40495 4.21506 4.42486 4.50730 4.60024 4.82717 4.89844 5.20649 5.25659 5.27473 5.37261 5.59210 5.73450 5.82461 5.95316 6.06938 6.14786 6.19088 6.39456 6.64084 6.77736 6.98187 7.03529 7.28503 7.34628 7.50229 7.57816 7.84691 7.93823 8.39331 8.95600 9.56720 11.04149 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.059312 B = 0.003051 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.965890 B = 9175.078386 C = 9395.653308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.038 0.962 11 C -0.100 4.100 12 C 0.022 3.978 13 N -0.512 5.512 14 C 0.038 3.962 15 C 0.133 3.867 16 N -0.355 5.355 17 C 0.074 3.926 18 C -0.193 4.193 19 Cl -0.048 7.048 20 C 0.059 3.941 21 N -0.276 5.276 22 C 0.047 3.953 23 H 0.260 0.740 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.182 0.818 33 H 0.190 0.810 34 H 0.022 0.978 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.258 -18.607 -6.009 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.056 0.944 11 C -0.138 4.138 12 C -0.105 4.105 13 N -0.237 5.237 14 C -0.091 4.091 15 C 0.013 3.987 16 N -0.137 5.137 17 C -0.075 4.075 18 C -0.232 4.232 19 Cl -0.020 7.020 20 C -0.128 4.128 21 N -0.097 5.097 22 C -0.080 4.080 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.199 0.801 33 H 0.207 0.793 34 H 0.041 0.959 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.310 -17.342 -6.059 18.515 hybrid contribution -1.008 -0.206 0.242 1.057 sum 1.301 -17.548 -5.816 18.533 Atomic orbital electron populations 1.69973 1.05981 1.26587 1.50378 1.24979 0.94789 0.99153 0.94999 0.86619 0.80038 0.83607 0.78000 1.20692 1.21385 1.19832 1.21157 0.93776 0.90422 1.49352 0.92352 1.19515 0.93747 0.91875 0.92827 0.94419 1.22511 1.00330 0.91007 0.99972 1.23413 0.89571 0.99597 0.97940 1.64860 1.33286 1.04353 1.21177 1.22481 1.02606 0.89834 0.94208 1.22009 1.04076 0.72654 0.99997 1.48653 1.11935 1.07068 1.46045 1.22301 0.96663 0.87755 1.00732 1.20755 0.97611 0.87516 1.17336 1.98318 1.80869 1.26185 1.96677 1.23880 0.95382 0.94024 0.99508 1.77531 1.07509 1.06186 1.18463 1.23134 1.01905 0.95716 0.87279 0.93041 0.92450 0.91792 0.91566 0.95025 0.94710 0.89638 0.88288 0.88143 0.80064 0.79334 0.95949 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.23 13.11 55.43 0.73 -24.51 16 2 C 0.06 1.71 5.32 -17.82 -0.09 1.61 16 3 Si 0.89 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -13.68 8.31 -34.44 -0.29 -13.97 16 8 H 0.06 1.57 7.38 -52.48 -0.39 1.18 16 9 C 0.04 0.95 2.76 -90.41 -0.25 0.70 16 10 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 11 C -0.10 -2.17 6.32 -24.87 -0.16 -2.33 16 12 C 0.02 0.38 5.10 -1.90 -0.01 0.37 16 13 N -0.51 -9.07 5.40 -230.46 -1.24 -10.32 16 14 C 0.04 0.56 5.21 -3.83 -0.02 0.54 16 15 C 0.13 1.57 6.17 -4.04 -0.02 1.54 16 16 N -0.36 -4.28 3.68 -61.32 -0.23 -4.50 16 17 C 0.07 0.76 11.43 -17.16 -0.20 0.57 16 18 C -0.19 -2.04 6.65 -39.97 -0.27 -2.31 16 19 Cl -0.05 -0.46 29.30 -51.86 -1.52 -1.98 16 20 C 0.06 0.64 12.02 -17.33 -0.21 0.44 16 21 N -0.28 -3.64 12.42 30.64 0.38 -3.26 16 22 C 0.05 0.96 6.34 -2.75 -0.02 0.94 16 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 25 H 0.06 1.49 7.86 -51.93 -0.41 1.08 16 26 H 0.07 0.98 7.66 -51.93 -0.40 0.58 16 27 H 0.03 0.51 8.00 -51.93 -0.42 0.09 16 28 H 0.03 0.53 7.81 -51.93 -0.41 0.13 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.10 1.01 6.72 -51.93 -0.35 0.66 16 32 H 0.18 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.19 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 35 H 0.07 1.59 7.41 -51.93 -0.38 1.21 16 LS Contribution 307.75 15.07 4.64 4.64 Total: -1.00 -29.04 307.75 -8.61 -37.65 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.81 Total: -1.88 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -1.53 Total: -11.89 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: -0.36 Total: -42.59 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.52 Total: -1.98 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.04 -8.61 -37.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397589248.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.914 kcal (2) G-P(sol) polarization free energy of solvation -29.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds