Wall clock time and date at job start Mon Mar 30 2020 05:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99996 * 2 1 4 4 H 1.48495 * 109.47548 * 274.97759 * 3 2 1 5 5 H 1.48501 * 109.46850 * 34.98006 * 3 2 1 6 6 H 1.48506 * 109.46967 * 154.97853 * 3 2 1 7 7 C 1.37874 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00432 * 188.86598 * 7 2 1 9 9 C 1.50707 * 120.00092 * 8.86007 * 7 2 1 10 10 H 1.09000 * 110.27035 * 307.36656 * 9 7 2 11 11 C 1.54596 * 110.39281 * 69.51555 * 9 7 2 12 12 C 1.54929 * 102.92329 * 140.91596 * 11 9 7 13 13 N 1.48535 * 103.22703 * 322.58806 * 12 11 9 14 14 C 1.46898 * 110.99955 * 159.72096 * 13 12 11 15 15 C 1.52999 * 109.47473 * 52.60104 * 14 13 12 16 16 N 1.46496 * 109.47609 * 179.97438 * 15 14 13 17 17 C 1.35049 * 126.03606 * 124.99275 * 16 15 14 18 18 C 1.35378 * 107.72763 * 179.79144 * 17 16 15 19 19 Cl 1.73595 * 126.04934 * 180.22925 * 18 17 16 20 20 C 1.39931 * 107.90726 * 0.37539 * 18 17 16 21 21 N 1.30853 * 108.20991 * 359.62088 * 20 18 17 22 22 C 1.47901 * 105.82312 * 39.20629 * 13 12 11 23 23 H 0.96996 * 119.99961 * 359.97438 * 1 2 3 24 24 H 1.09005 * 110.71937 * 259.28129 * 11 9 7 25 25 H 1.09006 * 110.72453 * 22.37667 * 11 9 7 26 26 H 1.09003 * 110.67003 * 204.14883 * 12 11 9 27 27 H 1.09001 * 110.66595 * 81.01810 * 12 11 9 28 28 H 1.08998 * 109.47244 * 292.59949 * 14 13 12 29 29 H 1.08999 * 109.47017 * 172.60064 * 14 13 12 30 30 H 1.08998 * 109.47012 * 59.99703 * 15 14 13 31 31 H 1.09007 * 109.46759 * 300.00223 * 15 14 13 32 32 H 1.08002 * 126.13828 * 0.03460 * 17 16 15 33 33 H 1.07999 * 125.89519 * 179.89126 * 20 18 17 34 34 H 1.08995 * 109.91503 * 94.01907 * 22 13 12 35 35 H 1.08997 * 109.91611 * 215.12040 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3915 2.1072 -1.3947 5 1 1.5031 2.6199 0.8027 6 1 3.5954 1.4120 0.5922 7 6 2.0046 -1.1940 -0.0005 8 1 3.0749 -1.1997 0.1436 9 6 1.2645 -2.4913 -0.2021 10 1 0.4365 -2.5672 0.5026 11 6 0.7445 -2.5948 -1.6543 12 6 0.9727 -4.0881 -1.9985 13 7 2.2605 -4.3987 -1.3267 14 6 2.4139 -5.8458 -1.1259 15 6 2.2004 -6.5708 -2.4562 16 7 2.3540 -8.0139 -2.2561 17 6 1.4471 -8.9615 -2.5778 18 6 1.9693 -10.1637 -2.2390 19 17 1.2032 -11.7069 -2.4518 20 6 3.2345 -9.9422 -1.6838 21 7 3.4670 -8.6546 -1.6967 22 6 2.2224 -3.6851 -0.0318 23 1 -0.4850 0.8400 0.0004 24 1 -0.3154 -2.3452 -1.7031 25 1 1.3219 -1.9507 -2.3176 26 1 1.0580 -4.2258 -3.0764 27 1 0.1693 -4.7033 -1.5933 28 1 1.6772 -6.1922 -0.4011 29 1 3.4165 -6.0568 -0.7540 30 1 2.9371 -6.2245 -3.1810 31 1 1.1977 -6.3598 -2.8281 32 1 0.4805 -8.7912 -3.0285 33 1 3.9054 -10.7031 -1.3132 34 1 1.8517 -4.3503 0.7479 35 1 3.2202 -3.3305 0.2262 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397589248.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:02 Heat of formation + Delta-G solvation = 57.053178 kcal Electronic energy + Delta-G solvation = -17795.327732 eV Core-core repulsion = 14855.122312 eV Total energy + Delta-G solvation = -2940.205420 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.26857 -39.87491 -37.36983 -35.84746 -34.38001 -32.30381 -30.96637 -30.03049 -28.66794 -26.18554 -24.46782 -22.30325 -22.14421 -21.35928 -21.15292 -18.62646 -18.36602 -17.01886 -16.53990 -16.42296 -16.04641 -15.55133 -15.29462 -14.89700 -14.64445 -14.22818 -13.96342 -13.73284 -13.65334 -13.11563 -12.81854 -12.61292 -12.54701 -12.45199 -12.33396 -12.13648 -12.02877 -11.58185 -11.41999 -11.23641 -10.88596 -10.59088 -10.49487 -9.42417 -9.36230 -8.15629 -6.21382 0.74116 0.97218 1.40831 1.42757 1.52570 1.59504 1.79993 2.43418 3.06073 3.17280 3.48489 3.82249 3.85328 4.00762 4.07224 4.22741 4.32264 4.44082 4.47021 4.51625 4.60833 4.74379 4.81004 4.87256 5.00828 5.19873 5.31628 5.37108 5.53411 5.66994 5.81473 5.82511 6.07572 6.17588 6.37183 6.52892 6.86779 7.44489 8.94702 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.059312 B = 0.003051 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.965890 B = 9175.078386 C = 9395.653308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.525 4.525 8 H 0.052 0.948 9 C 0.030 3.970 10 H 0.004 0.996 11 C -0.095 4.095 12 C 0.037 3.963 13 N -0.516 5.516 14 C 0.046 3.954 15 C 0.141 3.859 16 N -0.365 5.365 17 C 0.079 3.921 18 C -0.205 4.205 19 Cl -0.040 7.040 20 C 0.060 3.940 21 N -0.315 5.315 22 C 0.057 3.943 23 H 0.261 0.739 24 H 0.041 0.959 25 H 0.044 0.956 26 H 0.101 0.899 27 H 0.048 0.952 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.213 0.787 33 H 0.211 0.789 34 H 0.029 0.971 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 -19.811 -7.188 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.070 0.930 9 C 0.011 3.989 10 H 0.023 0.977 11 C -0.134 4.134 12 C -0.091 4.091 13 N -0.241 5.241 14 C -0.083 4.083 15 C 0.021 3.979 16 N -0.147 5.147 17 C -0.069 4.069 18 C -0.243 4.243 19 Cl -0.012 7.012 20 C -0.127 4.127 21 N -0.137 5.137 22 C -0.071 4.071 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.119 0.881 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.143 0.857 32 H 0.229 0.771 33 H 0.227 0.773 34 H 0.047 0.953 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.378 -18.566 -7.242 20.070 hybrid contribution -1.039 0.084 0.644 1.225 sum 1.338 -18.482 -6.599 19.670 Atomic orbital electron populations 1.70079 1.07239 1.27321 1.51366 1.25707 0.95570 1.02331 0.94813 0.85652 0.78871 0.79675 0.78139 1.20090 1.21060 1.19361 1.21491 0.93717 0.92010 1.49133 0.92987 1.19486 0.93343 0.92487 0.93583 0.97746 1.22298 0.98733 0.94392 0.97994 1.23351 0.89719 0.95996 0.99998 1.64782 1.33705 1.06276 1.19342 1.22387 1.01849 0.87929 0.96153 1.21910 1.05575 0.72538 0.97913 1.48631 1.12183 1.07191 1.46728 1.22831 0.97214 0.87195 0.99630 1.20900 0.97699 0.88166 1.17563 1.98322 1.80639 1.25570 1.96647 1.24316 0.95923 0.93861 0.98550 1.77494 1.08783 1.07275 1.20128 1.22844 1.00129 0.94920 0.89178 0.93008 0.94006 0.93702 0.88077 0.93383 0.95098 0.90735 0.88059 0.85684 0.77068 0.77277 0.95315 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.16 13.11 21.45 0.28 -52.88 16 2 C 0.01 0.81 5.32 84.65 0.45 1.26 16 3 Si 0.95 43.57 29.55 68.60 2.03 45.60 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.53 -28.83 8.31 25.60 0.21 -28.62 16 8 H 0.05 2.85 7.38 -2.91 -0.02 2.83 16 9 C 0.03 1.49 2.76 -10.66 -0.03 1.46 16 10 H 0.00 0.24 8.07 -2.39 -0.02 0.22 16 11 C -0.10 -4.17 6.32 31.80 0.20 -3.97 16 12 C 0.04 1.17 5.10 86.65 0.44 1.61 16 13 N -0.52 -17.53 5.40 -883.04 -4.76 -22.30 16 14 C 0.05 1.27 5.21 86.30 0.45 1.72 16 15 C 0.14 2.92 6.17 86.38 0.53 3.45 16 16 N -0.37 -7.93 3.68 -347.93 -1.28 -9.21 16 17 C 0.08 1.40 11.43 83.54 0.95 2.35 16 18 C -0.20 -3.85 6.65 22.02 0.15 -3.70 16 19 Cl -0.04 -0.66 29.30 -2.72 -0.08 -0.74 16 20 C 0.06 1.21 12.02 85.25 1.02 2.23 16 21 N -0.32 -7.86 12.42 -56.97 -0.71 -8.57 16 22 C 0.06 2.35 6.34 86.45 0.55 2.90 16 23 H 0.26 14.33 8.31 -92.71 -0.77 13.55 16 24 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.04 2.09 7.86 -2.38 -0.02 2.08 16 26 H 0.10 2.58 7.66 -2.39 -0.02 2.57 16 27 H 0.05 1.40 8.00 -2.39 -0.02 1.38 16 28 H 0.03 0.89 7.81 -2.39 -0.02 0.87 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.13 1.96 6.72 -2.38 -0.02 1.95 16 32 H 0.21 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.21 2.98 8.06 -2.91 -0.02 2.95 16 34 H 0.03 1.12 7.57 -2.39 -0.02 1.11 16 35 H 0.06 2.69 7.41 -2.39 -0.02 2.67 16 Total: -1.00 -63.41 307.75 1.49 -61.93 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 1.08 Total: 5.49 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 4.93 Total: -19.32 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -6.47 Total: -92.95 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -63.41 1.49 -61.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397589248.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.978 kcal (2) G-P(sol) polarization free energy of solvation -63.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds