Wall clock time and date at job start Mon Mar 30 2020 05:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00048 * 2 1 4 4 H 1.48498 * 109.47371 * 270.00110 * 3 2 1 5 5 H 1.48502 * 109.46984 * 30.00297 * 3 2 1 6 6 H 1.48503 * 109.47099 * 149.99984 * 3 2 1 7 7 C 1.37877 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99777 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99989 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.63029 * 56.90137 * 9 7 2 11 11 C 1.55140 * 110.86101 * 293.68873 * 9 7 2 12 12 C 1.54907 * 101.65799 * 205.89516 * 11 9 7 13 13 N 1.47845 * 104.79145 * 37.06783 * 12 11 9 14 14 C 1.46906 * 110.99647 * 213.63735 * 13 12 11 15 15 C 1.53002 * 109.47053 * 290.84326 * 14 13 12 16 16 N 1.46496 * 109.47237 * 180.02562 * 15 14 13 17 17 C 1.35045 * 126.03853 * 124.71391 * 16 15 14 18 18 C 1.35375 * 107.72533 * 179.84164 * 17 16 15 19 19 Cl 1.73598 * 126.04479 * 180.16214 * 18 17 16 20 20 C 1.39924 * 107.91190 * 0.42571 * 18 17 16 21 21 N 1.30850 * 108.21392 * 359.73706 * 20 18 17 22 22 C 1.47441 * 108.57385 * 335.90448 * 13 12 11 23 23 H 0.96999 * 119.99797 * 359.97438 * 1 2 3 24 24 H 1.09000 * 110.98645 * 323.98797 * 11 9 7 25 25 H 1.08998 * 110.99335 * 87.76042 * 11 9 7 26 26 H 1.09000 * 110.36912 * 278.24381 * 12 11 9 27 27 H 1.08996 * 110.37416 * 155.89519 * 12 11 9 28 28 H 1.08992 * 109.47459 * 50.84409 * 14 13 12 29 29 H 1.09004 * 109.47040 * 170.84560 * 14 13 12 30 30 H 1.09001 * 109.47142 * 300.00160 * 15 14 13 31 31 H 1.09004 * 109.47006 * 60.00213 * 15 14 13 32 32 H 1.07994 * 126.13498 * 359.97438 * 17 16 15 33 33 H 1.08000 * 125.89973 * 179.75903 * 20 18 17 34 34 H 1.09000 * 109.88870 * 120.39556 * 22 13 12 35 35 H 1.08991 * 109.89326 * 241.42514 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5762 -2.5530 -0.8549 11 6 0.4709 -2.6866 1.3273 12 6 0.3702 -4.2299 1.4160 13 7 1.6601 -4.7232 0.8881 14 6 1.4851 -5.9958 0.1754 15 6 1.1340 -7.0974 1.1775 16 7 0.9601 -8.3666 0.4670 17 6 1.6133 -9.5194 0.7281 18 6 1.1669 -10.4529 -0.1448 19 17 1.6879 -12.1068 -0.2267 20 6 0.2157 -9.8474 -0.9734 21 7 0.0912 -8.5973 -0.6075 22 6 2.2283 -3.6935 -0.0011 23 1 -0.4850 0.8401 0.0004 24 1 1.0319 -2.2828 2.1701 25 1 -0.5184 -2.2331 1.2663 26 1 -0.4545 -4.5922 0.8022 27 1 0.2396 -4.5427 2.4519 28 1 0.6799 -5.8969 -0.5525 29 1 2.4105 -6.2543 -0.3393 30 1 1.9393 -7.1964 1.9055 31 1 0.2086 -6.8390 1.6922 32 1 2.3566 -9.6701 1.4969 33 1 -0.3230 -10.3288 -1.7761 34 1 3.2016 -3.3763 0.3732 35 1 2.3311 -4.0911 -1.0107 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397589250.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:06 Heat of formation + Delta-G solvation = 72.976635 kcal Electronic energy + Delta-G solvation = -17775.976939 eV Core-core repulsion = 14836.462012 eV Total energy + Delta-G solvation = -2939.514927 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.41257 -38.30316 -36.59661 -34.42059 -32.76678 -30.85535 -29.94639 -28.35835 -27.41626 -24.40848 -23.11030 -21.37844 -21.04009 -19.86694 -19.61063 -17.53984 -16.55426 -15.84051 -15.31451 -14.77417 -14.59565 -14.43205 -14.08593 -13.78102 -13.42302 -12.82828 -12.58973 -12.28202 -12.11402 -11.79212 -11.59729 -11.22308 -11.05968 -10.98201 -10.75194 -10.67928 -10.54820 -10.30359 -9.73612 -9.69405 -9.36203 -8.92784 -8.59049 -8.43725 -7.80043 -6.06783 -4.09705 1.57408 1.79381 2.41647 2.63440 3.28038 3.35020 3.38157 4.22675 4.40478 4.55067 4.72635 4.84692 4.93561 5.24961 5.27458 5.32819 5.39657 5.68796 5.72853 5.95238 6.04615 6.12588 6.19568 6.26982 6.46226 6.67548 6.78405 7.06077 7.08852 7.37641 7.45379 7.54735 7.62057 7.81608 7.93447 8.35590 8.92137 9.54649 11.03326 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.061398 B = 0.002983 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.928545 B = 9384.506850 C = 9461.130215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.058 0.942 9 C 0.035 3.965 10 H 0.031 0.969 11 C -0.105 4.105 12 C 0.032 3.968 13 N -0.531 5.531 14 C 0.042 3.958 15 C 0.137 3.863 16 N -0.355 5.355 17 C 0.075 3.925 18 C -0.194 4.194 19 Cl -0.049 7.049 20 C 0.059 3.941 21 N -0.276 5.276 22 C 0.050 3.950 23 H 0.260 0.740 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.036 0.964 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.183 0.817 33 H 0.189 0.811 34 H 0.072 0.928 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 -19.450 2.162 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.076 0.924 9 C 0.016 3.984 10 H 0.049 0.951 11 C -0.144 4.144 12 C -0.096 4.096 13 N -0.256 5.256 14 C -0.088 4.088 15 C 0.016 3.984 16 N -0.137 5.137 17 C -0.073 4.073 18 C -0.233 4.233 19 Cl -0.021 7.021 20 C -0.128 4.128 21 N -0.098 5.098 22 C -0.077 4.077 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.125 0.875 31 H 0.108 0.892 32 H 0.200 0.800 33 H 0.206 0.794 34 H 0.090 0.910 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.412 -18.291 2.433 18.506 hybrid contribution 0.336 0.075 -0.539 0.640 sum 1.749 -18.216 1.894 18.397 Atomic orbital electron populations 1.69958 1.05949 1.26607 1.50312 1.24987 0.94859 0.99156 0.94946 0.86591 0.79899 0.83414 0.78092 1.20715 1.21247 1.19836 1.21053 0.92780 0.90119 1.51052 0.92418 1.19810 0.92801 0.92035 0.93790 0.95096 1.22640 1.01546 0.89938 1.00237 1.23234 0.89305 0.98692 0.98343 1.63586 1.24577 1.02439 1.35013 1.22426 1.01280 0.90325 0.94734 1.21903 1.03750 0.78777 0.93933 1.48672 1.30057 1.09295 1.25679 1.22291 0.98755 0.85830 1.00461 1.20755 1.08278 0.88537 1.05724 1.98316 1.90114 1.15500 1.98200 1.23879 0.97792 0.91126 1.00004 1.77561 1.13366 1.16503 1.02332 1.23002 1.00066 0.91857 0.92790 0.92995 0.92346 0.91126 0.94582 0.91915 0.93370 0.90965 0.87501 0.89193 0.80010 0.79379 0.90963 0.94712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.25 12.49 55.43 0.69 -24.56 16 2 C 0.06 1.71 5.36 -17.82 -0.10 1.61 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.51 -13.77 8.48 -34.44 -0.29 -14.06 16 8 H 0.06 1.53 7.53 -52.49 -0.40 1.13 16 9 C 0.03 0.85 2.77 -89.95 -0.25 0.60 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.10 -2.36 5.95 -24.59 -0.15 -2.51 16 12 C 0.03 0.57 5.78 -2.30 -0.01 0.56 16 13 N -0.53 -9.34 5.16 -231.25 -1.19 -10.54 16 14 C 0.04 0.62 4.75 -3.82 -0.02 0.61 16 15 C 0.14 1.62 6.55 -4.04 -0.03 1.59 16 16 N -0.36 -4.32 3.68 -61.33 -0.23 -4.55 16 17 C 0.08 0.77 11.43 -17.16 -0.20 0.57 16 18 C -0.19 -2.06 6.65 -39.97 -0.27 -2.33 16 19 Cl -0.05 -0.46 29.30 -51.86 -1.52 -1.98 16 20 C 0.06 0.66 12.02 -17.34 -0.21 0.45 16 21 N -0.28 -3.79 12.42 30.64 0.38 -3.41 16 22 C 0.05 1.02 6.45 -2.83 -0.02 1.00 16 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.06 1.36 8.05 -51.93 -0.42 0.95 16 25 H 0.07 1.71 7.76 -51.93 -0.40 1.31 16 26 H 0.04 0.65 7.62 -51.93 -0.40 0.26 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.81 7.85 -51.93 -0.41 0.40 16 29 H 0.07 1.06 8.03 -51.93 -0.42 0.65 16 30 H 0.11 1.04 8.07 -51.93 -0.42 0.62 16 31 H 0.09 1.07 7.49 -51.93 -0.39 0.68 16 32 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.19 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.07 1.51 7.63 -51.93 -0.40 1.12 16 35 H 0.03 0.68 7.54 -51.93 -0.39 0.29 16 LS Contribution 308.39 15.07 4.65 4.65 Total: -1.00 -28.99 308.39 -8.63 -37.62 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -4.86 Total: -1.32 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -1.53 Total: -11.90 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.35 Total: -43.06 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.52 Total: -1.98 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.99 -8.63 -37.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397589250.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.594 kcal (2) G-P(sol) polarization free energy of solvation -28.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds