Wall clock time and date at job start Mon Mar 30 2020 05:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00048 * 2 1 4 4 H 1.48498 * 109.47371 * 270.00110 * 3 2 1 5 5 H 1.48502 * 109.46984 * 30.00297 * 3 2 1 6 6 H 1.48503 * 109.47099 * 149.99984 * 3 2 1 7 7 C 1.37877 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99777 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99989 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.63029 * 56.90137 * 9 7 2 11 11 C 1.55140 * 110.86101 * 293.68873 * 9 7 2 12 12 C 1.54907 * 101.65799 * 205.89516 * 11 9 7 13 13 N 1.47845 * 104.79145 * 37.06783 * 12 11 9 14 14 C 1.46906 * 110.99647 * 213.63735 * 13 12 11 15 15 C 1.53002 * 109.47053 * 290.84326 * 14 13 12 16 16 N 1.46496 * 109.47237 * 180.02562 * 15 14 13 17 17 C 1.35045 * 126.03853 * 124.71391 * 16 15 14 18 18 C 1.35375 * 107.72533 * 179.84164 * 17 16 15 19 19 Cl 1.73598 * 126.04479 * 180.16214 * 18 17 16 20 20 C 1.39924 * 107.91190 * 0.42571 * 18 17 16 21 21 N 1.30850 * 108.21392 * 359.73706 * 20 18 17 22 22 C 1.47441 * 108.57385 * 335.90448 * 13 12 11 23 23 H 0.96999 * 119.99797 * 359.97438 * 1 2 3 24 24 H 1.09000 * 110.98645 * 323.98797 * 11 9 7 25 25 H 1.08998 * 110.99335 * 87.76042 * 11 9 7 26 26 H 1.09000 * 110.36912 * 278.24381 * 12 11 9 27 27 H 1.08996 * 110.37416 * 155.89519 * 12 11 9 28 28 H 1.08992 * 109.47459 * 50.84409 * 14 13 12 29 29 H 1.09004 * 109.47040 * 170.84560 * 14 13 12 30 30 H 1.09001 * 109.47142 * 300.00160 * 15 14 13 31 31 H 1.09004 * 109.47006 * 60.00213 * 15 14 13 32 32 H 1.07994 * 126.13498 * 359.97438 * 17 16 15 33 33 H 1.08000 * 125.89973 * 179.75903 * 20 18 17 34 34 H 1.09000 * 109.88870 * 120.39556 * 22 13 12 35 35 H 1.08991 * 109.89326 * 241.42514 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5762 -2.5530 -0.8549 11 6 0.4709 -2.6866 1.3273 12 6 0.3702 -4.2299 1.4160 13 7 1.6601 -4.7232 0.8881 14 6 1.4851 -5.9958 0.1754 15 6 1.1340 -7.0974 1.1775 16 7 0.9601 -8.3666 0.4670 17 6 1.6133 -9.5194 0.7281 18 6 1.1669 -10.4529 -0.1448 19 17 1.6879 -12.1068 -0.2267 20 6 0.2157 -9.8474 -0.9734 21 7 0.0912 -8.5973 -0.6075 22 6 2.2283 -3.6935 -0.0011 23 1 -0.4850 0.8401 0.0004 24 1 1.0319 -2.2828 2.1701 25 1 -0.5184 -2.2331 1.2663 26 1 -0.4545 -4.5922 0.8022 27 1 0.2396 -4.5427 2.4519 28 1 0.6799 -5.8969 -0.5525 29 1 2.4105 -6.2543 -0.3393 30 1 1.9393 -7.1964 1.9055 31 1 0.2086 -6.8390 1.6922 32 1 2.3566 -9.6701 1.4969 33 1 -0.3230 -10.3288 -1.7761 34 1 3.2016 -3.3763 0.3732 35 1 2.3311 -4.0911 -1.0107 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397589250.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:05 Heat of formation + Delta-G solvation = 55.026032 kcal Electronic energy + Delta-G solvation = -17776.755336 eV Core-core repulsion = 14836.462012 eV Total energy + Delta-G solvation = -2940.293324 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.25485 -39.85850 -37.35920 -35.79774 -34.41478 -32.24727 -30.94718 -30.07076 -28.67781 -26.23700 -24.36998 -22.22957 -22.12776 -21.43503 -21.21416 -18.65752 -18.32520 -17.04469 -16.65187 -16.29918 -15.93198 -15.62128 -15.20024 -15.01169 -14.38610 -14.23979 -14.04012 -13.74574 -13.65037 -13.00130 -12.82649 -12.78570 -12.68113 -12.39600 -12.33071 -12.17821 -11.98255 -11.55242 -11.41595 -11.24792 -10.93631 -10.59393 -10.50616 -9.41553 -9.30483 -8.15856 -6.25619 0.75691 0.99040 1.41243 1.42094 1.52493 1.60033 1.81304 2.41977 3.03922 3.15955 3.63889 3.80182 3.85726 4.00743 4.09427 4.29529 4.35224 4.40480 4.50723 4.56183 4.60849 4.74161 4.82758 4.88114 4.98169 5.22911 5.32174 5.37592 5.55800 5.68548 5.83005 5.85794 6.04656 6.15831 6.31642 6.54007 6.83435 7.42186 8.93828 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.061398 B = 0.002983 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.928545 B = 9384.506850 C = 9461.130215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.024 3.976 10 H -0.006 1.006 11 C -0.100 4.100 12 C 0.046 3.954 13 N -0.521 5.521 14 C 0.048 3.952 15 C 0.146 3.854 16 N -0.365 5.365 17 C 0.085 3.915 18 C -0.206 4.206 19 Cl -0.039 7.039 20 C 0.059 3.941 21 N -0.322 5.322 22 C 0.061 3.939 23 H 0.261 0.739 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.035 0.965 27 H 0.095 0.905 28 H 0.025 0.975 29 H 0.076 0.924 30 H 0.137 0.863 31 H 0.090 0.910 32 H 0.217 0.783 33 H 0.208 0.792 34 H 0.070 0.930 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.020 -20.841 3.191 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.076 0.924 9 C 0.005 3.995 10 H 0.012 0.988 11 C -0.139 4.139 12 C -0.082 4.082 13 N -0.246 5.246 14 C -0.082 4.082 15 C 0.025 3.975 16 N -0.147 5.147 17 C -0.064 4.064 18 C -0.244 4.244 19 Cl -0.011 7.011 20 C -0.127 4.127 21 N -0.144 5.144 22 C -0.067 4.067 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.113 0.887 28 H 0.044 0.956 29 H 0.094 0.906 30 H 0.155 0.845 31 H 0.108 0.892 32 H 0.233 0.767 33 H 0.225 0.775 34 H 0.089 0.911 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.685 -19.706 3.460 20.187 hybrid contribution -0.064 0.428 -0.910 1.008 sum 2.620 -19.278 2.550 19.622 Atomic orbital electron populations 1.70088 1.07357 1.27337 1.51250 1.25788 0.95669 1.02598 0.94689 0.85572 0.78835 0.79197 0.78174 1.20301 1.20984 1.18922 1.21425 0.93032 0.91482 1.50749 0.92404 1.19790 0.93265 0.93124 0.93334 0.98766 1.22430 0.99489 0.93255 0.98681 1.23130 0.89575 0.95171 1.00287 1.63601 1.23978 1.02616 1.34374 1.22392 1.00691 0.89938 0.95139 1.21811 1.04803 0.77792 0.93091 1.48656 1.30456 1.09820 1.25791 1.22857 0.98277 0.84763 1.00463 1.20892 1.08414 0.89234 1.05882 1.98321 1.89974 1.14658 1.98189 1.24292 0.97627 0.90644 1.00174 1.77523 1.15095 1.17877 1.03872 1.22760 0.98967 0.91263 0.93699 0.93046 0.93393 0.93732 0.94667 0.88692 0.95647 0.90592 0.84526 0.89181 0.76677 0.77533 0.91139 0.94361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.59 12.49 21.45 0.27 -53.32 16 2 C 0.01 0.63 5.36 84.65 0.45 1.08 16 3 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.53 -28.92 8.48 25.60 0.22 -28.70 16 8 H 0.06 3.08 7.53 -2.91 -0.02 3.06 16 9 C 0.02 1.21 2.77 -10.36 -0.03 1.18 16 10 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 11 C -0.10 -4.58 5.95 31.98 0.19 -4.39 16 12 C 0.05 1.61 5.78 86.77 0.50 2.11 16 13 N -0.52 -17.58 5.16 -885.53 -4.57 -22.15 16 14 C 0.05 1.35 4.75 86.30 0.41 1.76 16 15 C 0.15 3.06 6.55 86.38 0.57 3.62 16 16 N -0.37 -8.10 3.68 -347.94 -1.28 -9.38 16 17 C 0.08 1.47 11.43 83.54 0.95 2.43 16 18 C -0.21 -3.92 6.65 22.02 0.15 -3.77 16 19 Cl -0.04 -0.66 29.30 -2.72 -0.08 -0.74 16 20 C 0.06 1.25 12.02 85.25 1.02 2.28 16 21 N -0.32 -8.51 12.42 -56.98 -0.71 -9.22 16 22 C 0.06 2.47 6.45 86.65 0.56 3.03 16 23 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 24 H 0.05 2.26 8.05 -2.39 -0.02 2.24 16 25 H 0.04 2.23 7.76 -2.39 -0.02 2.22 16 26 H 0.03 1.25 7.62 -2.39 -0.02 1.24 16 27 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.03 0.84 7.85 -2.39 -0.02 0.83 16 29 H 0.08 2.11 8.03 -2.38 -0.02 2.09 16 30 H 0.14 2.08 8.07 -2.39 -0.02 2.06 16 31 H 0.09 1.91 7.49 -2.38 -0.02 1.89 16 32 H 0.22 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.21 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.07 2.91 7.63 -2.39 -0.02 2.89 16 35 H 0.04 1.51 7.54 -2.39 -0.02 1.49 16 Total: -1.00 -63.58 308.39 1.72 -61.86 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.08 Total: 6.91 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 4.99 Total: -19.36 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -6.29 Total: -94.07 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -63.58 1.72 -61.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397589250.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.884 kcal (2) G-P(sol) polarization free energy of solvation -63.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds