Wall clock time and date at job start Mon Mar 30 2020 05:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00124 * 2 1 4 4 H 1.48497 * 109.47416 * 240.00248 * 3 2 1 5 5 H 1.48502 * 109.46971 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47021 * 120.00427 * 3 2 1 7 7 C 1.37877 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00164 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99802 * 359.97438 * 7 2 1 10 10 O 1.42909 * 109.47267 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00035 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46988 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.47155 * 64.99885 * 12 11 10 14 14 C 1.35901 * 117.00068 * 180.02562 * 13 12 11 15 15 C 1.38767 * 120.04088 * 0.02562 * 14 13 12 16 16 C 1.38139 * 119.99202 * 179.97438 * 15 14 13 17 17 C 1.38252 * 120.08125 * 359.72789 * 16 15 14 18 18 C 1.50693 * 119.95739 * 180.29967 * 17 16 15 19 19 N 1.46899 * 109.47100 * 260.24924 * 18 17 16 20 20 C 1.38479 * 120.07990 * 0.54383 * 17 16 15 21 21 F 1.35104 * 119.99308 * 179.72616 * 20 17 16 22 22 C 1.38382 * 120.00772 * 359.45908 * 20 17 16 23 23 H 0.97001 * 119.99598 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47405 * 60.00706 * 9 7 2 25 25 H 1.08999 * 109.47712 * 300.00311 * 9 7 2 26 26 H 1.09001 * 109.47271 * 59.99642 * 11 10 9 27 27 H 1.09004 * 109.46874 * 299.99660 * 11 10 9 28 28 H 1.09000 * 109.47414 * 304.99726 * 12 11 10 29 29 H 1.08998 * 109.47490 * 184.99656 * 12 11 10 30 30 H 1.07996 * 120.00641 * 359.97438 * 15 14 13 31 31 H 1.08007 * 119.95527 * 179.97438 * 16 15 14 32 32 H 1.08999 * 109.47405 * 20.25016 * 18 17 16 33 33 H 1.08999 * 109.47339 * 140.25172 * 18 17 16 34 34 H 1.00896 * 111.00545 * 180.02562 * 19 18 17 35 35 H 1.00906 * 110.99677 * 303.95197 * 19 18 17 36 36 H 1.07996 * 120.03824 * 180.25066 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6479 -5.9562 -0.0017 13 8 3.3874 -5.8902 1.2193 14 6 4.3946 -6.7885 1.3800 15 6 4.6657 -7.7140 0.3823 16 6 5.6900 -8.6262 0.5464 17 6 6.4496 -8.6148 1.7015 18 6 7.5706 -9.6068 1.8747 19 7 7.1151 -10.7177 2.7211 20 6 6.1782 -7.6962 2.7016 21 9 6.9180 -7.6903 3.8321 22 6 5.1529 -6.7809 2.5409 23 1 -0.4849 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 0.9451 -4.9822 -0.8913 27 1 0.9446 -4.9827 0.8887 28 1 3.3215 -5.7953 -0.8435 29 1 2.1820 -6.9374 -0.0917 30 1 4.0760 -7.7212 -0.5225 31 1 5.9002 -9.3466 -0.2304 32 1 7.8691 -9.9917 0.8996 33 1 8.4211 -9.1152 2.3471 34 1 7.8496 -11.3968 2.8528 35 1 6.7724 -10.3796 3.6080 36 1 4.9434 -6.0617 3.3188 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404284385.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:01 Heat of formation + Delta-G solvation = -111.886940 kcal Electronic energy + Delta-G solvation = -19491.746754 eV Core-core repulsion = 16083.586415 eV Total energy + Delta-G solvation = -3408.160340 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.11095 -40.17308 -37.93172 -36.55801 -34.68313 -32.78511 -31.23368 -30.20454 -29.36136 -26.95268 -24.88712 -23.58535 -22.43415 -22.18859 -21.02628 -18.62051 -17.06054 -16.64310 -16.40440 -16.27452 -16.13388 -15.78156 -15.20774 -14.92397 -14.73542 -14.59662 -14.35215 -14.11645 -13.85247 -13.21504 -13.00613 -12.48332 -12.31145 -12.03025 -11.81099 -11.44841 -11.14086 -11.03577 -10.82590 -10.77290 -10.55043 -10.06471 -9.15705 -9.10239 -9.00871 -8.88959 -8.26126 -8.22702 -6.12737 -4.14538 0.99650 1.14462 3.09704 3.31999 3.34458 3.38624 3.41260 4.17230 4.30898 4.37384 4.52380 4.60309 4.69666 4.76739 5.01670 5.07087 5.19594 5.23806 5.32559 5.34906 5.41765 5.78110 5.82922 5.83540 5.86482 6.05424 6.16136 6.20297 6.57814 6.72387 7.03256 7.05890 7.37338 7.39360 7.77023 8.11296 8.50794 8.97671 9.50242 10.98781 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032096 B = 0.003104 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.174536 B = 9017.580217 C = 9534.332878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.390 6.390 11 C 0.062 3.938 12 C 0.064 3.936 13 O -0.293 6.293 14 C 0.172 3.828 15 C -0.222 4.222 16 C -0.033 4.033 17 C -0.167 4.167 18 C 0.109 3.891 19 N -0.846 5.846 20 C 0.141 3.859 21 F -0.137 7.137 22 C -0.191 4.191 23 H 0.265 0.735 24 H 0.006 0.994 25 H 0.007 0.993 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.083 0.917 33 H 0.037 0.963 34 H 0.342 0.658 35 H 0.342 0.658 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.277 -20.414 2.224 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.310 6.310 11 C -0.016 4.016 12 C -0.011 4.011 13 O -0.206 6.206 14 C 0.125 3.875 15 C -0.241 4.241 16 C -0.052 4.052 17 C -0.168 4.168 18 C -0.021 4.021 19 N -0.376 5.376 20 C 0.121 3.879 21 F -0.116 7.116 22 C -0.211 4.211 23 H 0.074 0.926 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.741 -20.226 1.808 22.972 hybrid contribution 0.821 1.125 0.662 1.542 sum 11.562 -19.101 2.470 22.464 Atomic orbital electron populations 1.69951 1.06105 1.27330 1.50432 1.24949 0.94996 0.99456 0.95073 0.86377 0.79308 0.81801 0.78894 1.19994 1.21126 1.19958 1.21011 0.94081 0.89309 1.51024 0.91552 1.20233 0.88723 0.83476 0.95489 1.87924 1.35295 1.12582 1.95218 1.22287 0.93197 0.85506 1.00592 1.23051 0.93977 0.98762 0.85314 1.86257 1.42624 1.51686 1.39988 1.18734 0.87827 0.88161 0.92826 1.21362 1.02822 0.99281 1.00630 1.20631 0.92418 0.96275 0.95838 1.19592 1.02120 0.99573 0.95520 1.20502 0.92984 0.89948 0.98643 1.58786 1.41647 1.15940 1.21215 1.17107 0.91328 0.96521 0.82899 1.91477 1.75218 1.95938 1.48963 1.20260 0.98093 1.03139 0.99597 0.92557 0.97602 0.97510 0.91969 0.93173 0.90977 0.90991 0.84602 0.84816 0.89831 0.94498 0.84520 0.84502 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -15.33 9.43 -34.44 -0.32 -15.65 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.19 5.35 5.69 36.00 0.20 5.55 16 10 O -0.39 -9.44 10.29 -40.09 -0.41 -9.86 16 11 C 0.06 1.10 6.32 37.16 0.23 1.34 16 12 C 0.06 0.91 5.12 37.16 0.19 1.10 16 13 O -0.29 -4.86 10.10 -24.29 -0.25 -5.11 16 14 C 0.17 2.44 6.68 -39.23 -0.26 2.17 16 15 C -0.22 -2.56 9.04 -39.42 -0.36 -2.92 16 16 C -0.03 -0.34 9.66 -39.61 -0.38 -0.72 16 17 C -0.17 -1.81 5.40 -104.53 -0.56 -2.37 16 18 C 0.11 0.94 6.63 -4.98 -0.03 0.91 16 19 N -0.85 -6.81 9.61 -11.41 -0.11 -6.92 16 20 C 0.14 1.75 7.24 -39.44 -0.29 1.46 16 21 F -0.14 -1.67 16.66 2.25 0.04 -1.64 16 22 C -0.19 -2.63 9.97 -39.37 -0.39 -3.02 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.98 7.66 -51.93 -0.40 0.58 16 29 H 0.07 0.77 7.66 -51.93 -0.40 0.37 16 30 H 0.14 1.31 6.30 -52.49 -0.33 0.98 16 31 H 0.13 1.03 8.04 -52.48 -0.42 0.61 16 32 H 0.08 0.61 8.00 -51.93 -0.42 0.19 16 33 H 0.04 0.31 7.94 -51.93 -0.41 -0.10 16 34 H 0.34 1.97 9.08 -39.29 -0.36 1.62 16 35 H 0.34 2.82 8.98 -39.29 -0.35 2.47 16 36 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 317.85 15.07 4.79 4.79 Total: -1.00 -32.64 317.85 -7.04 -39.67 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -4.74 Total: -1.12 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -2.07 Total: -10.60 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.63 Total: -33.10 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.66 Total: -14.96 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.64 -7.04 -39.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404284385.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.214 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds