Wall clock time and date at job start Mon Mar 30 2020 05:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00124 * 2 1 4 4 H 1.48497 * 109.47416 * 240.00248 * 3 2 1 5 5 H 1.48502 * 109.46971 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47021 * 120.00427 * 3 2 1 7 7 C 1.37877 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00164 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99802 * 359.97438 * 7 2 1 10 10 O 1.42909 * 109.47267 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00035 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46988 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.47155 * 64.99885 * 12 11 10 14 14 C 1.35901 * 117.00068 * 180.02562 * 13 12 11 15 15 C 1.38767 * 120.04088 * 0.02562 * 14 13 12 16 16 C 1.38139 * 119.99202 * 179.97438 * 15 14 13 17 17 C 1.38252 * 120.08125 * 359.72789 * 16 15 14 18 18 C 1.50693 * 119.95739 * 180.29967 * 17 16 15 19 19 N 1.46899 * 109.47100 * 260.24924 * 18 17 16 20 20 C 1.38479 * 120.07990 * 0.54383 * 17 16 15 21 21 F 1.35104 * 119.99308 * 179.72616 * 20 17 16 22 22 C 1.38382 * 120.00772 * 359.45908 * 20 17 16 23 23 H 0.97001 * 119.99598 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47405 * 60.00706 * 9 7 2 25 25 H 1.08999 * 109.47712 * 300.00311 * 9 7 2 26 26 H 1.09001 * 109.47271 * 59.99642 * 11 10 9 27 27 H 1.09004 * 109.46874 * 299.99660 * 11 10 9 28 28 H 1.09000 * 109.47414 * 304.99726 * 12 11 10 29 29 H 1.08998 * 109.47490 * 184.99656 * 12 11 10 30 30 H 1.07996 * 120.00641 * 359.97438 * 15 14 13 31 31 H 1.08007 * 119.95527 * 179.97438 * 16 15 14 32 32 H 1.08999 * 109.47405 * 20.25016 * 18 17 16 33 33 H 1.08999 * 109.47339 * 140.25172 * 18 17 16 34 34 H 1.00896 * 111.00545 * 180.02562 * 19 18 17 35 35 H 1.00906 * 110.99677 * 303.95197 * 19 18 17 36 36 H 1.07996 * 120.03824 * 180.25066 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6479 -5.9562 -0.0017 13 8 3.3874 -5.8902 1.2193 14 6 4.3946 -6.7885 1.3800 15 6 4.6657 -7.7140 0.3823 16 6 5.6900 -8.6262 0.5464 17 6 6.4496 -8.6148 1.7015 18 6 7.5706 -9.6068 1.8747 19 7 7.1151 -10.7177 2.7211 20 6 6.1782 -7.6962 2.7016 21 9 6.9180 -7.6903 3.8321 22 6 5.1529 -6.7809 2.5409 23 1 -0.4849 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 0.9451 -4.9822 -0.8913 27 1 0.9446 -4.9827 0.8887 28 1 3.3215 -5.7953 -0.8435 29 1 2.1820 -6.9374 -0.0917 30 1 4.0760 -7.7212 -0.5225 31 1 5.9002 -9.3466 -0.2304 32 1 7.8691 -9.9917 0.8996 33 1 8.4211 -9.1152 2.3471 34 1 7.8496 -11.3968 2.8528 35 1 6.7724 -10.3796 3.6080 36 1 4.9434 -6.0617 3.3188 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404284385.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:00 Heat of formation + Delta-G solvation = -135.039903 kcal Electronic energy + Delta-G solvation = -19492.750742 eV Core-core repulsion = 16083.586415 eV Total energy + Delta-G solvation = -3409.164327 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.06200 -41.19094 -39.07429 -38.19222 -35.46231 -34.94401 -32.28426 -31.34371 -30.43901 -28.98672 -25.72451 -24.77450 -24.39233 -23.33124 -22.00320 -19.65297 -18.70240 -17.92956 -17.76622 -17.37441 -17.19306 -16.83124 -16.64050 -16.32059 -15.96453 -15.79262 -15.53968 -15.41324 -14.83101 -14.66533 -13.97817 -13.80591 -13.57874 -13.22646 -13.18666 -12.88361 -12.71163 -12.64250 -12.39609 -12.11387 -11.86569 -11.76654 -11.31770 -10.90891 -10.28490 -9.94433 -9.73866 -9.20594 -8.34351 -6.46790 0.07157 0.22024 1.38595 1.43310 1.51777 2.04540 2.32977 2.50252 2.99395 3.08576 3.26579 3.66692 3.67582 3.89608 3.91235 3.99092 4.12504 4.20590 4.28137 4.45075 4.51317 4.55039 4.66713 4.74084 4.83862 4.93880 4.99257 5.15363 5.23398 5.33818 5.51890 5.68008 5.93178 6.10365 6.34713 6.49925 6.53038 6.77952 7.24932 8.77666 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032096 B = 0.003104 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.174536 B = 9017.580217 C = 9534.332878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.553 4.553 8 H 0.059 0.941 9 C 0.209 3.791 10 O -0.410 6.410 11 C 0.049 3.951 12 C 0.068 3.932 13 O -0.329 6.329 14 C 0.147 3.853 15 C -0.216 4.216 16 C -0.028 4.028 17 C -0.162 4.162 18 C 0.110 3.890 19 N -0.850 5.850 20 C 0.130 3.870 21 F -0.140 7.140 22 C -0.213 4.213 23 H 0.272 0.728 24 H -0.005 1.005 25 H -0.015 1.015 26 H 0.085 0.915 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.159 0.841 31 H 0.169 0.831 32 H 0.104 0.896 33 H 0.037 0.963 34 H 0.355 0.645 35 H 0.340 0.660 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.517 -21.578 1.072 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.590 4.590 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.330 6.330 11 C -0.028 4.028 12 C -0.006 4.006 13 O -0.243 6.243 14 C 0.101 3.899 15 C -0.235 4.235 16 C -0.046 4.046 17 C -0.163 4.163 18 C -0.020 4.020 19 N -0.382 5.382 20 C 0.110 3.890 21 F -0.119 7.119 22 C -0.233 4.233 23 H 0.081 0.919 24 H 0.012 0.988 25 H 0.003 0.997 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.133 0.867 30 H 0.176 0.824 31 H 0.186 0.814 32 H 0.122 0.878 33 H 0.055 0.945 34 H 0.170 0.830 35 H 0.152 0.848 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.991 -21.431 0.657 24.567 hybrid contribution 0.439 1.348 1.045 1.761 sum 12.431 -20.084 1.702 23.680 Atomic orbital electron populations 1.70051 1.07666 1.28792 1.50285 1.25949 0.96003 1.03334 0.93834 0.85250 0.78148 0.76769 0.79352 1.18845 1.19741 1.19313 1.21365 0.94053 0.91039 1.52577 0.92283 1.19847 0.88547 0.84467 0.93764 1.87866 1.35521 1.14346 1.95304 1.22702 0.95028 0.83545 1.01535 1.23104 0.93334 0.99151 0.84992 1.86184 1.43836 1.53235 1.41015 1.18916 0.88010 0.89078 0.93910 1.21636 1.03091 0.98280 1.00444 1.21046 0.91271 0.96134 0.96176 1.19957 1.02339 0.99049 0.94985 1.20569 0.91939 0.89682 0.99857 1.58787 1.42320 1.15963 1.21083 1.17235 0.91283 0.96975 0.83463 1.91463 1.75194 1.95991 1.49232 1.20335 0.99250 1.03850 0.99831 0.91936 0.98760 0.99724 0.89704 0.93499 0.90162 0.86654 0.82351 0.81399 0.87787 0.94531 0.83005 0.84826 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.98 44.89 29.54 68.60 2.03 46.92 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.55 -33.58 9.43 25.60 0.24 -33.33 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.85 5.69 71.23 0.41 12.25 16 10 O -0.41 -20.36 10.29 -144.33 -1.49 -21.84 16 11 C 0.05 1.73 6.32 71.98 0.45 2.18 16 12 C 0.07 1.87 5.12 71.98 0.37 2.24 16 13 O -0.33 -11.00 10.10 -87.79 -0.89 -11.88 16 14 C 0.15 4.13 6.68 22.50 0.15 4.28 16 15 C -0.22 -4.48 9.04 22.37 0.20 -4.28 16 16 C -0.03 -0.49 9.66 22.25 0.21 -0.27 16 17 C -0.16 -3.19 5.40 -19.81 -0.11 -3.29 16 18 C 0.11 1.61 6.63 85.55 0.57 2.17 16 19 N -0.85 -11.78 9.61 -190.02 -1.83 -13.61 16 20 C 0.13 3.20 7.24 22.36 0.16 3.36 16 21 F -0.14 -3.43 16.66 44.97 0.75 -2.68 16 22 C -0.21 -6.04 9.97 22.41 0.22 -5.81 16 23 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 24 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 25 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 26 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.08 2.04 7.66 -2.39 -0.02 2.02 16 29 H 0.12 2.13 7.66 -2.39 -0.02 2.11 16 30 H 0.16 2.48 6.30 -2.91 -0.02 2.46 16 31 H 0.17 1.78 8.04 -2.91 -0.02 1.75 16 32 H 0.10 1.12 8.00 -2.39 -0.02 1.10 16 33 H 0.04 0.55 7.94 -2.39 -0.02 0.53 16 34 H 0.36 3.27 9.08 -89.70 -0.81 2.45 16 35 H 0.34 5.11 8.98 -89.69 -0.81 4.31 16 36 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -71.81 317.85 1.70 -70.11 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -0.51 Total: 8.41 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 3.35 Total: -19.60 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -1.54 Total: -69.43 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -2.37 Total: -33.73 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.75 Total: -2.68 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -71.81 1.70 -70.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404284385.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.932 kcal (2) G-P(sol) polarization free energy of solvation -71.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds