Wall clock time and date at job start Mon Mar 30 2020 05:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 N 1.49347 * 108.33293 * 2 1 4 4 O 1.42100 * 114.65215 * 121.10658 * 2 1 3 5 5 N 1.65601 * 108.33463 * 242.21194 * 2 1 3 6 6 C 1.46501 * 119.99507 * 359.97438 * 5 2 1 7 7 C 1.50702 * 109.47571 * 264.99710 * 6 5 2 8 8 H 1.08000 * 119.99248 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00372 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99871 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00110 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47282 * 89.99798 * 11 9 7 13 13 H 1.48498 * 109.47151 * 209.99829 * 11 9 7 14 14 H 1.48499 * 109.46983 * 329.99866 * 11 9 7 15 15 C 1.46493 * 120.00196 * 180.02562 * 5 2 1 16 16 C 1.50706 * 109.47190 * 264.99706 * 15 5 2 17 17 C 1.38675 * 120.41529 * 89.99861 * 16 15 5 18 18 C 1.38631 * 118.41792 * 179.97438 * 17 16 15 19 19 C 1.38221 * 119.16077 * 0.25627 * 18 17 16 20 20 N 1.31860 * 120.76509 * 359.49797 * 19 18 17 21 21 C 1.31882 * 121.72556 * 0.49011 * 20 19 18 22 22 H 1.09008 * 109.46621 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47289 * 299.99582 * 1 2 3 24 24 H 1.08994 * 109.47094 * 60.00628 * 1 2 3 25 25 H 0.97003 * 120.00443 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47495 * 25.00132 * 6 5 2 27 27 H 1.09006 * 109.46713 * 145.00496 * 6 5 2 28 28 H 0.97002 * 120.00226 * 180.02562 * 10 9 7 29 29 H 1.09008 * 109.47517 * 144.99792 * 15 5 2 30 30 H 1.08998 * 109.47567 * 24.99642 * 15 5 2 31 31 H 1.07997 * 120.79161 * 0.02562 * 17 16 15 32 32 H 1.08002 * 120.41548 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.62066 * 179.74470 * 19 18 17 34 34 H 1.07993 * 119.62126 * 179.75488 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 7 2.2837 1.4177 0.0000 4 8 2.4067 -0.6672 1.1058 5 7 2.3349 -0.7328 -1.3907 6 6 1.3609 -1.2435 -2.3585 7 6 1.1200 -2.7091 -2.1033 8 1 1.6401 -3.2099 -1.3002 9 6 0.2357 -3.4106 -2.8951 10 7 -0.3980 -2.8005 -3.8728 11 14 -0.0634 -5.2270 -2.5783 12 1 -1.1849 -5.3839 -1.6177 13 1 -0.4074 -5.9022 -3.8554 14 1 1.1645 -5.8391 -2.0099 15 6 3.7696 -0.8715 -1.6525 16 6 4.2371 0.2768 -2.5094 17 6 4.6958 1.4476 -1.9248 18 6 5.1164 2.4773 -2.7523 19 6 5.0599 2.3059 -4.1227 20 7 4.6220 1.1765 -4.6437 21 6 4.2145 0.1759 -3.8873 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 3.2337 1.6139 0.0004 26 1 0.4234 -0.6975 -2.2533 27 1 1.7480 -1.1095 -3.3687 28 1 -1.0204 -3.2939 -4.4297 29 1 3.9550 -1.8116 -2.1721 30 1 4.3136 -0.8650 -0.7080 31 1 4.7255 1.5545 -0.8506 32 1 5.4793 3.4034 -2.3315 33 1 5.3818 3.1048 -4.7743 34 1 3.8587 -0.7326 -4.3502 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404724115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:31 Heat of formation + Delta-G solvation = 43.187630 kcal Electronic energy + Delta-G solvation = -18912.798443 eV Core-core repulsion = 15974.035474 eV Total energy + Delta-G solvation = -2938.762969 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.92755 -36.01079 -35.58457 -33.24247 -32.13425 -31.20032 -31.12014 -29.41127 -27.38108 -25.37987 -23.41708 -22.57756 -21.48930 -18.04823 -17.32041 -16.87924 -16.52803 -15.93050 -15.58488 -15.42122 -14.88897 -14.53496 -13.88919 -13.37032 -13.22903 -12.99826 -12.98364 -12.71350 -12.50837 -12.20928 -11.84612 -11.34357 -11.23255 -11.00943 -10.89154 -10.60427 -10.29832 -10.04372 -9.61545 -9.24403 -9.11071 -8.82561 -8.71013 -8.51420 -8.08500 -6.29444 -4.39110 0.48337 1.34775 1.50701 3.15493 3.24248 3.26600 3.36172 4.07511 4.23283 4.49517 4.58346 4.67879 4.94746 5.01062 5.06371 5.11343 5.18150 5.24448 5.36083 5.49121 5.78018 5.94362 5.99236 6.04980 6.23561 6.28592 6.52774 6.93496 7.02399 7.18662 7.37056 7.67813 7.92446 7.94881 8.20860 8.69819 9.30809 10.76875 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.017815 B = 0.007588 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.319004 B = 3688.974335 C = 4730.114610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.542 4.542 2 S 2.504 3.496 3 N -1.328 6.328 4 O -1.014 7.014 5 N -0.996 5.996 6 C 0.240 3.760 7 C -0.554 4.554 8 H 0.064 0.936 9 C 0.068 3.932 10 N -0.886 5.886 11 Si 0.894 3.106 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.177 3.823 16 C -0.147 4.147 17 C -0.063 4.063 18 C -0.173 4.173 19 C 0.090 3.910 20 N -0.488 5.488 21 C 0.121 3.879 22 H 0.141 0.859 23 H 0.132 0.868 24 H 0.139 0.861 25 H 0.375 0.625 26 H 0.035 0.965 27 H 0.040 0.960 28 H 0.267 0.733 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.150 0.850 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.518 6.894 2.335 9.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.701 4.701 2 S 2.609 3.391 3 N -1.163 6.163 4 O -0.991 6.991 5 N -0.828 5.828 6 C 0.117 3.883 7 C -0.593 4.593 8 H 0.083 0.917 9 C -0.136 4.136 10 N -0.524 5.524 11 Si 0.721 3.279 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.196 1.196 15 C 0.049 3.951 16 C -0.151 4.151 17 C -0.090 4.090 18 C -0.193 4.193 19 C -0.067 4.067 20 N -0.196 5.196 21 C -0.036 4.036 22 H 0.160 0.840 23 H 0.150 0.850 24 H 0.158 0.842 25 H 0.202 0.798 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.168 0.832 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.183 6.759 1.964 8.741 hybrid contribution 0.135 -1.238 0.663 1.411 sum 5.318 5.520 2.627 8.103 Atomic orbital electron populations 1.28934 1.16643 1.12581 1.11948 1.08430 0.80543 0.74032 0.76143 1.72178 1.31586 1.32421 1.80163 1.93416 1.73253 1.79695 1.52745 1.57982 1.10864 1.75998 1.37922 1.19240 0.85877 0.93945 0.89225 1.21653 1.25591 0.95035 1.17044 0.91734 1.24969 0.95344 0.98700 0.94613 1.69918 1.27240 1.36796 1.18435 0.86559 0.78838 0.84667 0.77858 1.20401 1.20949 1.19635 1.19862 0.81359 0.95979 0.97868 1.21500 0.99656 0.97470 0.96516 1.21472 0.94882 0.92503 1.00122 1.22033 1.02322 0.99870 0.95059 1.22700 0.95885 0.95034 0.93064 1.67714 1.10297 1.00784 1.40835 1.22771 0.93663 0.97252 0.89953 0.84012 0.85003 0.84207 0.79796 0.94761 0.94146 0.92336 0.88524 0.90881 0.85461 0.85082 0.83247 0.82377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.54 -7.88 9.45 101.05 0.95 -6.92 16 2 S 2.50 44.75 5.36 -107.50 -0.58 44.18 16 3 N -1.33 -23.77 13.92 60.35 0.84 -22.93 16 4 O -1.01 -21.78 17.92 -35.23 -0.63 -22.42 16 5 N -1.00 -18.65 2.81 -116.95 -0.33 -18.98 16 6 C 0.24 5.19 5.20 -5.19 -0.03 5.16 16 7 C -0.55 -13.44 9.38 -34.44 -0.32 -13.76 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -23.25 13.29 55.43 0.74 -22.51 16 11 Si 0.89 19.70 29.54 -169.99 -5.02 14.68 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 15 C 0.18 2.98 5.87 -5.19 -0.03 2.95 16 16 C -0.15 -2.34 5.48 -104.48 -0.57 -2.91 16 17 C -0.06 -0.90 8.91 -39.28 -0.35 -1.25 16 18 C -0.17 -2.21 10.11 -39.44 -0.40 -2.60 16 19 C 0.09 1.22 11.18 -17.55 -0.20 1.03 16 20 N -0.49 -7.93 10.36 -13.25 -0.14 -8.07 16 21 C 0.12 1.99 10.56 -17.55 -0.19 1.81 16 22 H 0.14 2.08 8.14 -51.92 -0.42 1.65 16 23 H 0.13 1.55 8.14 -51.93 -0.42 1.12 16 24 H 0.14 1.90 7.30 -51.93 -0.38 1.52 16 25 H 0.37 6.39 5.84 -21.58 -0.13 6.26 16 26 H 0.03 0.73 5.97 -51.93 -0.31 0.42 16 27 H 0.04 0.93 7.66 -51.93 -0.40 0.54 16 28 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.10 1.62 8.06 -51.92 -0.42 1.21 16 30 H 0.07 1.16 7.75 -51.93 -0.40 0.76 16 31 H 0.13 1.68 6.04 -52.49 -0.32 1.36 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.16 2.60 7.91 -52.49 -0.42 2.18 16 LS Contribution 301.16 15.07 4.54 4.54 Total: -1.00 -31.17 301.16 -5.81 -36.98 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -4.00 Total: 9.42 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -1.23 Total: -14.89 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: 1.11 Total: -72.49 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.63 Total: -22.42 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 44.75 SS G_CDS: -0.58 Total: 44.18 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.17 -5.81 -36.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404724115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.165 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds