Wall clock time and date at job start Mon Mar 30 2020 05:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 N 1.49347 * 108.33293 * 2 1 4 4 O 1.42100 * 114.65215 * 121.10658 * 2 1 3 5 5 N 1.65601 * 108.33463 * 242.21194 * 2 1 3 6 6 C 1.46501 * 119.99507 * 359.97438 * 5 2 1 7 7 C 1.50702 * 109.47571 * 264.99710 * 6 5 2 8 8 H 1.08000 * 119.99248 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00372 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99871 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00110 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47282 * 89.99798 * 11 9 7 13 13 H 1.48498 * 109.47151 * 209.99829 * 11 9 7 14 14 H 1.48499 * 109.46983 * 329.99866 * 11 9 7 15 15 C 1.46493 * 120.00196 * 180.02562 * 5 2 1 16 16 C 1.50706 * 109.47190 * 264.99706 * 15 5 2 17 17 C 1.38675 * 120.41529 * 89.99861 * 16 15 5 18 18 C 1.38631 * 118.41792 * 179.97438 * 17 16 15 19 19 C 1.38221 * 119.16077 * 0.25627 * 18 17 16 20 20 N 1.31860 * 120.76509 * 359.49797 * 19 18 17 21 21 C 1.31882 * 121.72556 * 0.49011 * 20 19 18 22 22 H 1.09008 * 109.46621 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47289 * 299.99582 * 1 2 3 24 24 H 1.08994 * 109.47094 * 60.00628 * 1 2 3 25 25 H 0.97003 * 120.00443 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47495 * 25.00132 * 6 5 2 27 27 H 1.09006 * 109.46713 * 145.00496 * 6 5 2 28 28 H 0.97002 * 120.00226 * 180.02562 * 10 9 7 29 29 H 1.09008 * 109.47517 * 144.99792 * 15 5 2 30 30 H 1.08998 * 109.47567 * 24.99642 * 15 5 2 31 31 H 1.07997 * 120.79161 * 0.02562 * 17 16 15 32 32 H 1.08002 * 120.41548 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.62066 * 179.74470 * 19 18 17 34 34 H 1.07993 * 119.62126 * 179.75488 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 7 2.2837 1.4177 0.0000 4 8 2.4067 -0.6672 1.1058 5 7 2.3349 -0.7328 -1.3907 6 6 1.3609 -1.2435 -2.3585 7 6 1.1200 -2.7091 -2.1033 8 1 1.6401 -3.2099 -1.3002 9 6 0.2357 -3.4106 -2.8951 10 7 -0.3980 -2.8005 -3.8728 11 14 -0.0634 -5.2270 -2.5783 12 1 -1.1849 -5.3839 -1.6177 13 1 -0.4074 -5.9022 -3.8554 14 1 1.1645 -5.8391 -2.0099 15 6 3.7696 -0.8715 -1.6525 16 6 4.2371 0.2768 -2.5094 17 6 4.6958 1.4476 -1.9248 18 6 5.1164 2.4773 -2.7523 19 6 5.0599 2.3059 -4.1227 20 7 4.6220 1.1765 -4.6437 21 6 4.2145 0.1759 -3.8873 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 3.2337 1.6139 0.0004 26 1 0.4234 -0.6975 -2.2533 27 1 1.7480 -1.1095 -3.3687 28 1 -1.0204 -3.2939 -4.4297 29 1 3.9550 -1.8116 -2.1721 30 1 4.3136 -0.8650 -0.7080 31 1 4.7255 1.5545 -0.8506 32 1 5.4793 3.4034 -2.3315 33 1 5.3818 3.1048 -4.7743 34 1 3.8587 -0.7326 -4.3502 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404724115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:31 Heat of formation + Delta-G solvation = 20.800953 kcal Electronic energy + Delta-G solvation = -18913.769202 eV Core-core repulsion = 15974.035474 eV Total energy + Delta-G solvation = -2939.733728 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.08576 -37.49060 -37.11602 -34.93470 -33.51708 -32.54685 -32.40645 -30.64623 -28.98993 -26.85460 -24.66892 -24.11554 -22.77389 -19.47845 -18.72597 -18.55181 -17.84360 -17.18600 -17.09050 -16.88369 -16.23007 -16.07578 -15.24173 -14.71484 -14.52518 -14.25693 -14.14887 -14.05334 -13.90706 -13.75616 -13.26719 -13.02718 -12.72792 -12.56445 -12.49129 -12.15273 -12.03562 -11.77515 -10.85264 -10.65996 -10.48628 -10.41527 -10.10996 -9.85747 -9.63234 -8.20791 -6.35702 -0.84679 0.20581 0.36672 1.40160 1.44643 1.52418 1.93346 2.40053 2.90687 3.09206 3.13986 3.24388 3.56811 3.72437 3.86449 3.99167 4.04889 4.11359 4.14479 4.34611 4.61773 4.66066 4.79257 4.87538 4.89389 5.18125 5.25351 5.34539 5.51352 5.67350 5.82547 5.84885 6.09152 6.54776 6.78315 7.06384 7.36866 8.84214 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.017815 B = 0.007588 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.319004 B = 3688.974335 C = 4730.114610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.529 4.529 2 S 2.490 3.510 3 N -1.322 6.322 4 O -1.054 7.054 5 N -0.997 5.997 6 C 0.252 3.748 7 C -0.559 4.559 8 H 0.056 0.944 9 C 0.027 3.973 10 N -0.914 5.914 11 Si 0.945 3.055 12 H -0.270 1.270 13 H -0.284 1.284 14 H -0.274 1.274 15 C 0.173 3.827 16 C -0.155 4.155 17 C -0.070 4.070 18 C -0.162 4.162 19 C 0.088 3.912 20 N -0.512 5.512 21 C 0.103 3.897 22 H 0.142 0.858 23 H 0.166 0.834 24 H 0.153 0.847 25 H 0.377 0.623 26 H 0.040 0.960 27 H 0.020 0.980 28 H 0.268 0.732 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.138 0.862 32 H 0.169 0.831 33 H 0.185 0.815 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.404 8.215 2.937 10.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.690 4.690 2 S 2.596 3.404 3 N -1.157 6.157 4 O -1.031 7.031 5 N -0.827 5.827 6 C 0.128 3.872 7 C -0.598 4.598 8 H 0.074 0.926 9 C -0.174 4.174 10 N -0.553 5.553 11 Si 0.771 3.229 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.199 1.199 15 C 0.046 3.954 16 C -0.159 4.159 17 C -0.097 4.097 18 C -0.181 4.181 19 C -0.070 4.070 20 N -0.221 5.221 21 C -0.054 4.054 22 H 0.161 0.839 23 H 0.184 0.816 24 H 0.171 0.829 25 H 0.203 0.797 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.156 0.844 32 H 0.187 0.813 33 H 0.202 0.798 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.101 8.073 2.575 9.891 hybrid contribution 0.208 -1.550 0.481 1.636 sum 5.309 6.524 3.057 8.949 Atomic orbital electron populations 1.28916 1.12248 1.13429 1.14360 1.08988 0.82474 0.73643 0.75300 1.72283 1.31972 1.31466 1.80024 1.93384 1.75507 1.80343 1.53896 1.57945 1.11205 1.76050 1.37489 1.18928 0.86584 0.92833 0.88844 1.21890 1.25004 0.96449 1.16457 0.92597 1.25584 0.95391 1.01924 0.94537 1.69996 1.28000 1.38033 1.19273 0.85745 0.78652 0.80770 0.77706 1.19548 1.20924 1.19891 1.19912 0.80773 0.96364 0.98383 1.21325 1.00716 0.97838 0.96002 1.21692 0.94730 0.92328 1.00966 1.22434 1.00543 1.00555 0.94560 1.23334 0.94644 0.94756 0.94232 1.67702 1.11195 1.01693 1.41474 1.22624 0.94979 0.97416 0.90386 0.83931 0.81630 0.82906 0.79663 0.94200 0.96179 0.92305 0.89551 0.90158 0.84426 0.81334 0.79849 0.83831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.53 -14.18 9.45 113.37 1.07 -13.11 16 2 S 2.49 86.74 5.36 -56.49 -0.30 86.44 16 3 N -1.32 -45.23 13.92 37.02 0.52 -44.72 16 4 O -1.05 -44.98 17.92 -148.98 -2.67 -47.65 16 5 N -1.00 -37.49 2.81 -523.90 -1.47 -38.96 16 6 C 0.25 11.02 5.20 85.63 0.45 11.47 16 7 C -0.56 -27.31 9.38 25.60 0.24 -27.07 16 8 H 0.06 2.78 7.81 -2.91 -0.02 2.76 16 9 C 0.03 1.35 5.46 84.65 0.46 1.82 16 10 N -0.91 -48.11 13.29 21.45 0.28 -47.82 16 11 Si 0.95 40.26 29.54 68.60 2.03 42.29 16 12 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 13 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 15 C 0.17 5.96 5.87 85.64 0.50 6.47 16 16 C -0.15 -4.93 5.48 -19.77 -0.11 -5.04 16 17 C -0.07 -1.91 8.91 22.47 0.20 -1.71 16 18 C -0.16 -3.65 10.11 22.36 0.23 -3.43 16 19 C 0.09 2.17 11.18 84.68 0.95 3.12 16 20 N -0.51 -16.41 10.36 -195.85 -2.03 -18.44 16 21 C 0.10 3.47 10.56 84.67 0.89 4.36 16 22 H 0.14 3.91 8.14 -2.39 -0.02 3.89 16 23 H 0.17 3.33 8.14 -2.39 -0.02 3.31 16 24 H 0.15 3.77 7.30 -2.39 -0.02 3.75 16 25 H 0.38 12.27 5.84 -104.94 -0.61 11.66 16 26 H 0.04 1.70 5.97 -2.39 -0.01 1.68 16 27 H 0.02 0.96 7.66 -2.38 -0.02 0.94 16 28 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 29 H 0.09 3.07 8.06 -2.38 -0.02 3.05 16 30 H 0.08 2.60 7.75 -2.39 -0.02 2.58 16 31 H 0.14 3.40 6.04 -2.91 -0.02 3.38 16 32 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.18 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.14 5.08 7.91 -2.91 -0.02 5.05 16 Total: -1.00 -66.01 301.16 1.74 -64.27 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.50 Total: 27.73 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 4.88 Total: -23.13 kcal Atomic # 7 Polarization: -147.24 SS G_CDS: -2.70 Total: -149.94 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -2.67 Total: -47.65 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Atomic # 16 Polarization: 86.74 SS G_CDS: -0.30 Total: 86.44 kcal Total: -66.01 1.74 -64.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404724115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.071 kcal (2) G-P(sol) polarization free energy of solvation -66.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds