Wall clock time and date at job start Mon Mar 30 2020 05:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 N 1.49350 * 108.33503 * 2 1 4 4 O 1.42101 * 114.64712 * 238.89193 * 2 1 3 5 5 N 1.65605 * 108.33188 * 117.78774 * 2 1 3 6 6 C 1.46497 * 119.99944 * 242.46761 * 5 2 1 7 7 C 1.50700 * 109.47015 * 265.00210 * 6 5 2 8 8 H 1.08000 * 120.00050 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99841 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00485 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99874 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47266 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47474 * 119.99643 * 11 9 7 14 14 H 1.48501 * 109.47473 * 239.99779 * 11 9 7 15 15 C 1.46493 * 120.00041 * 62.46392 * 5 2 1 16 16 C 1.50706 * 109.47190 * 94.99988 * 15 5 2 17 17 C 1.38675 * 120.41529 * 89.99861 * 16 15 5 18 18 C 1.38631 * 118.41792 * 179.97438 * 17 16 15 19 19 C 1.38221 * 119.16077 * 0.25627 * 18 17 16 20 20 N 1.31860 * 120.76509 * 359.49797 * 19 18 17 21 21 C 1.31882 * 121.72556 * 0.49011 * 20 19 18 22 22 H 1.09005 * 109.46894 * 300.00434 * 1 2 3 23 23 H 1.08999 * 109.46904 * 59.99541 * 1 2 3 24 24 H 1.08997 * 109.47041 * 180.02562 * 1 2 3 25 25 H 0.96998 * 120.00066 * 179.97438 * 3 2 1 26 26 H 1.09007 * 109.47136 * 24.99550 * 6 5 2 27 27 H 1.08997 * 109.47436 * 144.99726 * 6 5 2 28 28 H 0.96994 * 120.00230 * 180.02562 * 10 9 7 29 29 H 1.09008 * 109.47517 * 335.00074 * 15 5 2 30 30 H 1.08998 * 109.47567 * 214.99924 * 15 5 2 31 31 H 1.07998 * 120.79161 * 359.96013 * 17 16 15 32 32 H 1.08002 * 120.41548 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.62066 * 179.74470 * 19 18 17 34 34 H 1.07993 * 119.62126 * 179.75488 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 7 2.2839 1.4177 0.0000 4 8 2.4066 -0.6673 -1.1058 5 7 2.3349 -0.7329 1.3907 6 6 3.1220 0.0243 2.3671 7 6 4.5898 -0.2111 2.1201 8 1 4.9049 -0.8601 1.3164 9 6 5.5305 0.4013 2.9207 10 7 5.1470 1.1913 3.8997 11 14 7.3500 0.1090 2.6149 12 1 7.5164 -0.8135 1.4632 13 1 8.0155 1.4020 2.3142 14 1 7.9646 -0.4944 3.8246 15 6 2.0085 -2.1382 1.6446 16 6 3.1489 -3.0097 1.1850 17 6 4.1784 -3.3355 2.0552 18 6 5.2064 -4.1404 1.5891 19 6 5.1740 -4.5838 0.2803 20 7 4.1763 -4.2578 -0.5178 21 6 3.1817 -3.4946 -0.1085 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.2338 1.6138 0.0004 26 1 2.9023 1.0871 2.2652 27 1 2.8656 -0.3048 3.3741 28 1 5.8088 1.6223 4.4627 29 1 1.1039 -2.4057 1.0983 30 1 1.8455 -2.2863 2.7121 31 1 4.1794 -2.9707 3.0717 32 1 6.0245 -4.4137 2.2390 33 1 5.9732 -5.2078 -0.0918 34 1 2.3838 -3.2454 -0.7923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404724118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:34 Heat of formation + Delta-G solvation = 47.029316 kcal Electronic energy + Delta-G solvation = -19264.789356 eV Core-core repulsion = 16326.192975 eV Total energy + Delta-G solvation = -2938.596381 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.68900 -35.96066 -35.51901 -32.94856 -31.85192 -31.38494 -30.65488 -29.41753 -27.42903 -25.20539 -23.09431 -22.46544 -21.43426 -17.90881 -17.01645 -16.65765 -16.55657 -15.75111 -15.50093 -15.31239 -14.67550 -14.45591 -13.75236 -13.33809 -13.24357 -13.13703 -13.04183 -12.49644 -12.42935 -12.23657 -11.64757 -11.31980 -11.14751 -10.94614 -10.79552 -10.54022 -10.16506 -9.87450 -9.21400 -9.03289 -8.96325 -8.63784 -8.47102 -8.39040 -8.06182 -6.15203 -4.19666 0.46529 1.55865 1.83567 3.22320 3.32366 3.36802 3.42675 4.23454 4.35898 4.37580 4.71488 4.83865 4.93394 5.00198 5.19936 5.20331 5.25838 5.39008 5.49798 5.62835 5.66598 5.87517 6.02750 6.11126 6.33228 6.62895 6.80469 7.12414 7.17410 7.34325 7.49993 7.83132 8.12597 8.24459 8.41274 8.87742 9.47005 10.92247 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.011170 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.802237 B = 2506.176830 C = 3873.342046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.582 4.582 2 S 2.491 3.509 3 N -1.297 6.297 4 O -0.985 6.985 5 N -0.992 5.992 6 C 0.248 3.752 7 C -0.531 4.531 8 H 0.062 0.938 9 C 0.067 3.933 10 N -0.890 5.890 11 Si 0.886 3.114 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.283 1.283 15 C 0.169 3.831 16 C -0.148 4.148 17 C -0.024 4.024 18 C -0.184 4.184 19 C 0.090 3.910 20 N -0.494 5.494 21 C 0.116 3.884 22 H 0.133 0.867 23 H 0.130 0.870 24 H 0.118 0.882 25 H 0.396 0.604 26 H 0.055 0.945 27 H 0.034 0.966 28 H 0.263 0.737 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.146 0.854 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.388 -8.210 -1.593 11.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.739 4.739 2 S 2.589 3.411 3 N -1.132 6.132 4 O -0.963 6.963 5 N -0.821 5.821 6 C 0.126 3.874 7 C -0.571 4.571 8 H 0.080 0.920 9 C -0.136 4.136 10 N -0.528 5.528 11 Si 0.714 3.286 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.209 1.209 15 C 0.040 3.960 16 C -0.152 4.152 17 C -0.051 4.051 18 C -0.204 4.204 19 C -0.067 4.067 20 N -0.203 5.203 21 C -0.042 4.042 22 H 0.152 0.848 23 H 0.149 0.851 24 H 0.137 0.863 25 H 0.224 0.776 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.156 0.844 32 H 0.146 0.854 33 H 0.164 0.836 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.504 -8.353 -2.956 12.281 hybrid contribution 1.673 -0.031 1.117 2.012 sum -6.830 -8.384 -1.839 10.969 Atomic orbital electron populations 1.29449 1.22243 1.10184 1.12061 1.09413 0.79721 0.74660 0.77281 1.71929 1.33414 1.29904 1.77968 1.93494 1.70959 1.80026 1.51852 1.58488 1.65929 1.16213 1.41451 1.19195 0.89435 0.92080 0.86709 1.21605 0.90905 1.28668 1.15919 0.91969 1.24897 0.98869 0.94845 0.95010 1.69925 1.34094 1.30220 1.18591 0.86614 0.85445 0.78371 0.78210 1.19622 1.20798 1.20942 1.19958 0.92636 0.81437 1.01959 1.21190 0.99367 0.99063 0.95555 1.21462 0.91437 0.91658 1.00555 1.22062 1.00020 1.00690 0.97606 1.22609 0.95953 0.97654 0.90528 1.67610 1.02082 1.13548 1.37046 1.22542 0.96143 0.92440 0.93053 0.84795 0.85113 0.86329 0.77636 0.92744 0.94840 0.92714 0.91768 0.89603 0.84414 0.85448 0.83631 0.83523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.58 -6.29 10.94 101.05 1.11 -5.18 16 2 S 2.49 43.07 5.25 -107.50 -0.56 42.51 16 3 N -1.30 -26.58 12.60 60.35 0.76 -25.82 16 4 O -0.99 -20.71 17.18 -35.23 -0.61 -21.32 16 5 N -0.99 -17.84 2.83 -116.95 -0.33 -18.18 16 6 C 0.25 5.56 5.31 -5.20 -0.03 5.53 16 7 C -0.53 -13.56 8.05 -34.44 -0.28 -13.84 16 8 H 0.06 1.68 6.83 -52.49 -0.36 1.32 16 9 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -24.50 13.29 55.43 0.74 -23.76 16 11 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C 0.17 2.51 5.91 -5.19 -0.03 2.48 16 16 C -0.15 -2.55 4.83 -104.48 -0.50 -3.05 16 17 C -0.02 -0.43 8.21 -39.28 -0.32 -0.75 16 18 C -0.18 -3.00 10.11 -39.44 -0.40 -3.40 16 19 C 0.09 1.49 11.18 -17.55 -0.20 1.29 16 20 N -0.49 -9.19 10.36 -13.25 -0.14 -9.33 16 21 C 0.12 2.08 10.33 -17.55 -0.18 1.90 16 22 H 0.13 1.26 8.14 -51.92 -0.42 0.84 16 23 H 0.13 1.27 8.14 -51.92 -0.42 0.85 16 24 H 0.12 0.92 7.75 -51.93 -0.40 0.52 16 25 H 0.40 9.00 8.90 -21.58 -0.19 8.81 16 26 H 0.05 1.32 7.03 -51.93 -0.37 0.95 16 27 H 0.03 0.77 8.00 -51.93 -0.42 0.35 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.06 0.68 7.43 -51.92 -0.39 0.30 16 30 H 0.09 1.15 7.96 -51.93 -0.41 0.73 16 31 H 0.14 2.38 8.06 -52.49 -0.42 1.95 16 32 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 34 H 0.15 2.45 7.62 -52.49 -0.40 2.05 16 LS Contribution 303.01 15.07 4.57 4.57 Total: -1.00 -33.51 303.01 -5.71 -39.22 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -4.18 Total: 9.36 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -0.93 Total: -13.36 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: 1.03 Total: -77.08 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.61 Total: -21.32 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 43.07 SS G_CDS: -0.56 Total: 42.51 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.51 -5.71 -39.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404724118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.252 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds