Wall clock time and date at job start Mon Mar 30 2020 05:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 N 1.49350 * 108.33503 * 2 1 4 4 O 1.42101 * 114.64712 * 238.89193 * 2 1 3 5 5 N 1.65605 * 108.33188 * 117.78774 * 2 1 3 6 6 C 1.46497 * 119.99944 * 242.46761 * 5 2 1 7 7 C 1.50700 * 109.47015 * 265.00210 * 6 5 2 8 8 H 1.08000 * 120.00050 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99841 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00485 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99874 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47266 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47474 * 119.99643 * 11 9 7 14 14 H 1.48501 * 109.47473 * 239.99779 * 11 9 7 15 15 C 1.46493 * 120.00041 * 62.46392 * 5 2 1 16 16 C 1.50706 * 109.47190 * 94.99988 * 15 5 2 17 17 C 1.38675 * 120.41529 * 89.99861 * 16 15 5 18 18 C 1.38631 * 118.41792 * 179.97438 * 17 16 15 19 19 C 1.38221 * 119.16077 * 0.25627 * 18 17 16 20 20 N 1.31860 * 120.76509 * 359.49797 * 19 18 17 21 21 C 1.31882 * 121.72556 * 0.49011 * 20 19 18 22 22 H 1.09005 * 109.46894 * 300.00434 * 1 2 3 23 23 H 1.08999 * 109.46904 * 59.99541 * 1 2 3 24 24 H 1.08997 * 109.47041 * 180.02562 * 1 2 3 25 25 H 0.96998 * 120.00066 * 179.97438 * 3 2 1 26 26 H 1.09007 * 109.47136 * 24.99550 * 6 5 2 27 27 H 1.08997 * 109.47436 * 144.99726 * 6 5 2 28 28 H 0.96994 * 120.00230 * 180.02562 * 10 9 7 29 29 H 1.09008 * 109.47517 * 335.00074 * 15 5 2 30 30 H 1.08998 * 109.47567 * 214.99924 * 15 5 2 31 31 H 1.07998 * 120.79161 * 359.96013 * 17 16 15 32 32 H 1.08002 * 120.41548 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.62066 * 179.74470 * 19 18 17 34 34 H 1.07993 * 119.62126 * 179.75488 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 7 2.2839 1.4177 0.0000 4 8 2.4066 -0.6673 -1.1058 5 7 2.3349 -0.7329 1.3907 6 6 3.1220 0.0243 2.3671 7 6 4.5898 -0.2111 2.1201 8 1 4.9049 -0.8601 1.3164 9 6 5.5305 0.4013 2.9207 10 7 5.1470 1.1913 3.8997 11 14 7.3500 0.1090 2.6149 12 1 7.5164 -0.8135 1.4632 13 1 8.0155 1.4020 2.3142 14 1 7.9646 -0.4944 3.8246 15 6 2.0085 -2.1382 1.6446 16 6 3.1489 -3.0097 1.1850 17 6 4.1784 -3.3355 2.0552 18 6 5.2064 -4.1404 1.5891 19 6 5.1740 -4.5838 0.2803 20 7 4.1763 -4.2578 -0.5178 21 6 3.1817 -3.4946 -0.1085 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.2338 1.6138 0.0004 26 1 2.9023 1.0871 2.2652 27 1 2.8656 -0.3048 3.3741 28 1 5.8088 1.6223 4.4627 29 1 1.1039 -2.4057 1.0983 30 1 1.8455 -2.2863 2.7121 31 1 4.1794 -2.9707 3.0717 32 1 6.0245 -4.4137 2.2390 33 1 5.9732 -5.2078 -0.0918 34 1 2.3838 -3.2454 -0.7923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404724118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:34 Heat of formation + Delta-G solvation = 21.055024 kcal Electronic energy + Delta-G solvation = -19265.915686 eV Core-core repulsion = 16326.192975 eV Total energy + Delta-G solvation = -2939.722711 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99256 -37.41204 -36.96617 -34.78690 -33.28983 -32.82853 -32.04574 -30.40663 -29.09642 -26.67976 -24.48630 -24.16801 -22.74322 -19.29031 -18.67553 -18.26926 -17.90881 -17.09333 -16.94825 -16.70574 -16.43476 -15.76270 -15.23167 -14.67325 -14.57034 -14.19161 -14.14876 -13.93933 -13.83962 -13.61701 -13.28592 -13.03266 -12.66665 -12.52250 -12.39748 -12.25370 -11.81325 -11.68776 -10.65789 -10.55780 -10.42361 -10.39633 -9.96952 -9.83964 -9.56859 -8.17951 -6.26111 -0.76578 0.26198 0.49280 1.30088 1.36338 1.45200 2.08250 2.38394 2.92350 3.09614 3.14315 3.58789 3.67967 3.79201 3.98769 4.08799 4.14665 4.20096 4.24851 4.38361 4.70042 4.72745 4.81954 4.89730 5.02959 5.30477 5.33281 5.44651 5.58774 5.78456 5.87830 5.96340 6.18243 6.50696 6.85770 7.09237 7.42362 8.88280 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.011170 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.802237 B = 2506.176830 C = 3873.342046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.539 4.539 2 S 2.472 3.528 3 N -1.330 6.330 4 O -1.035 7.035 5 N -0.995 5.995 6 C 0.265 3.735 7 C -0.525 4.525 8 H 0.042 0.958 9 C 0.025 3.975 10 N -0.917 5.917 11 Si 0.932 3.068 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.271 1.271 15 C 0.159 3.841 16 C -0.155 4.155 17 C -0.043 4.043 18 C -0.188 4.188 19 C 0.080 3.920 20 N -0.518 5.518 21 C 0.100 3.900 22 H 0.159 0.841 23 H 0.153 0.847 24 H 0.165 0.835 25 H 0.375 0.625 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.264 0.736 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.150 0.850 33 H 0.175 0.825 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.340 -9.214 -1.559 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.700 4.700 2 S 2.577 3.423 3 N -1.160 6.160 4 O -1.013 7.013 5 N -0.822 5.822 6 C 0.141 3.859 7 C -0.565 4.565 8 H 0.060 0.940 9 C -0.175 4.175 10 N -0.557 5.557 11 Si 0.759 3.241 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.196 1.196 15 C 0.031 3.969 16 C -0.159 4.159 17 C -0.070 4.070 18 C -0.208 4.208 19 C -0.077 4.077 20 N -0.228 5.228 21 C -0.057 4.057 22 H 0.178 0.822 23 H 0.171 0.829 24 H 0.183 0.817 25 H 0.198 0.802 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.132 0.868 30 H 0.120 0.880 31 H 0.152 0.848 32 H 0.168 0.832 33 H 0.192 0.808 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.434 -9.379 -2.924 14.331 hybrid contribution 2.190 0.230 1.052 2.440 sum -8.244 -9.149 -1.872 12.457 Atomic orbital electron populations 1.29224 1.12104 1.14153 1.14512 1.09819 0.83454 0.73220 0.75840 1.71821 1.32220 1.32586 1.79405 1.93451 1.74986 1.80097 1.52799 1.58097 1.66784 1.17565 1.39789 1.18695 0.88340 0.91471 0.87433 1.21743 0.92925 1.27331 1.14503 0.93966 1.25443 1.01717 0.95115 0.95229 1.69985 1.34888 1.31323 1.19480 0.85904 0.82423 0.77756 0.78007 1.20629 1.21147 1.19618 1.20360 0.93609 0.79052 1.03866 1.21470 1.00112 0.99098 0.95235 1.21638 0.92303 0.92409 1.00650 1.22378 1.00320 1.00069 0.98010 1.23107 0.96199 0.97786 0.90566 1.67608 1.02881 1.14289 1.37979 1.22772 0.96555 0.92794 0.93613 0.82240 0.82900 0.81726 0.80180 0.94819 0.95329 0.92684 0.86761 0.88034 0.84836 0.83226 0.80801 0.82741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.54 -8.59 10.94 113.37 1.24 -7.35 16 2 S 2.47 81.71 5.25 -56.49 -0.30 81.42 16 3 N -1.33 -54.92 12.60 37.02 0.47 -54.45 16 4 O -1.04 -43.18 17.18 -148.98 -2.56 -45.74 16 5 N -0.99 -34.52 2.83 -523.92 -1.48 -36.00 16 6 C 0.26 11.91 5.31 85.63 0.45 12.37 16 7 C -0.53 -27.26 8.05 25.60 0.21 -27.05 16 8 H 0.04 2.33 6.83 -2.91 -0.02 2.31 16 9 C 0.02 1.34 5.46 84.65 0.46 1.80 16 10 N -0.92 -51.07 13.29 21.45 0.28 -50.78 16 11 Si 0.93 43.88 29.54 68.60 2.03 45.91 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 13 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 C 0.16 4.33 5.91 85.64 0.51 4.83 16 16 C -0.16 -5.20 4.83 -19.77 -0.10 -5.29 16 17 C -0.04 -1.49 8.21 22.47 0.18 -1.31 16 18 C -0.19 -6.00 10.11 22.36 0.23 -5.77 16 19 C 0.08 2.59 11.18 84.68 0.95 3.53 16 20 N -0.52 -19.02 10.36 -195.85 -2.03 -21.05 16 21 C 0.10 3.52 10.33 84.67 0.87 4.39 16 22 H 0.16 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.16 1.30 7.75 -2.39 -0.02 1.28 16 25 H 0.38 17.87 8.90 -104.95 -0.93 16.94 16 26 H 0.03 1.67 7.03 -2.38 -0.02 1.65 16 27 H 0.03 1.31 8.00 -2.39 -0.02 1.29 16 28 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 29 H 0.11 1.92 7.43 -2.38 -0.02 1.90 16 30 H 0.10 2.46 7.96 -2.39 -0.02 2.44 16 31 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 32 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 33 H 0.17 4.38 8.06 -2.91 -0.02 4.35 16 34 H 0.16 5.00 7.62 -2.91 -0.02 4.98 16 Total: -1.00 -76.21 303.01 1.59 -74.62 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.17 Total: 25.93 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 5.01 Total: -19.85 kcal Atomic # 7 Polarization: -159.53 SS G_CDS: -2.76 Total: -162.29 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -2.56 Total: -45.74 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 81.71 SS G_CDS: -0.30 Total: 81.42 kcal Total: -76.21 1.59 -74.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404724118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.679 kcal (2) G-P(sol) polarization free energy of solvation -76.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds