Wall clock time and date at job start Mon Mar 30 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48495 * 109.47201 * 240.00824 * 3 2 1 5 5 H 1.48506 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47090 * 120.00481 * 3 2 1 7 7 C 1.38951 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99557 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00193 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99807 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99855 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46800 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47473 * 179.97438 * 15 14 13 17 17 C 1.33875 * 122.76488 * 269.71158 * 16 15 14 18 18 O 1.21230 * 125.39200 * 359.97438 * 17 16 15 19 19 C 1.51315 * 109.20750 * 179.83865 * 17 16 15 20 20 C 1.54230 * 103.55426 * 0.38916 * 19 17 16 21 21 C 1.33875 * 122.75903 * 89.99982 * 16 15 14 22 22 O 1.21226 * 125.40090 * 359.97438 * 21 16 15 23 23 H 0.96998 * 120.00315 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00240 * 0.02562 * 9 7 2 25 25 H 1.08995 * 109.47455 * 60.00021 * 12 10 9 26 26 H 1.09003 * 109.47449 * 299.99253 * 12 10 9 27 27 H 1.00902 * 111.00190 * 56.03702 * 13 12 10 28 28 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 29 29 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 30 30 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 31 31 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 32 32 H 1.08998 * 110.79380 * 241.77795 * 19 17 16 33 33 H 1.09002 * 110.54273 * 118.87508 * 19 17 16 34 34 H 1.08995 * 110.60329 * 241.25892 * 20 19 17 35 35 H 1.08997 * 110.60287 * 118.29489 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6965 -1.2126 5 1 1.2831 2.7465 0.0006 6 1 3.1020 1.6964 1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0004 14 6 1.4982 -7.2708 -0.0015 15 6 2.5231 -8.4068 -0.0014 16 7 1.8248 -9.6946 -0.0019 17 6 1.4840 -10.3345 1.1236 18 8 1.7039 -9.9411 2.2490 19 6 0.7778 -11.6248 0.7683 20 6 0.7785 -11.6244 -0.7740 21 6 1.4799 -10.3312 -1.1280 22 8 1.6949 -9.9343 -2.2531 23 1 -0.4850 0.8400 0.0004 24 1 0.3535 -2.3907 -0.0005 25 1 0.6175 -4.9205 -0.8913 26 1 0.6169 -4.9209 0.8887 27 1 2.8328 -5.9124 0.7814 28 1 0.8723 -7.3455 0.8878 29 1 0.8743 -7.3450 -0.8922 30 1 3.1486 -8.3319 -0.8909 31 1 3.1474 -8.3328 0.8890 32 1 -0.2425 -11.6256 1.1516 33 1 1.3313 -12.4819 1.1520 34 1 -0.2415 -11.6252 -1.1580 35 1 1.3345 -12.4799 -1.1574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405385835.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:24 Heat of formation + Delta-G solvation = -97.556268 kcal Electronic energy + Delta-G solvation = -19726.166963 eV Core-core repulsion = 16338.548010 eV Total energy + Delta-G solvation = -3387.618953 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.15196 -38.84876 -38.30621 -36.37808 -35.78943 -33.97518 -33.37758 -31.22048 -29.37200 -26.55397 -26.16144 -24.08710 -22.70639 -22.44736 -19.84288 -19.18582 -17.91141 -17.56722 -17.26096 -16.78074 -16.12330 -15.58418 -15.14823 -14.64511 -14.53264 -14.30608 -14.27301 -14.14582 -13.87160 -13.51083 -13.40042 -12.98989 -12.42283 -12.19115 -11.83203 -11.60585 -11.50627 -11.28681 -10.99420 -10.92914 -10.43021 -10.33919 -10.20600 -10.03820 -9.49073 -8.49081 -8.12074 -7.95400 -6.40521 -3.81423 1.18205 2.17657 2.38075 3.21503 3.26938 3.31601 3.68087 3.80541 3.91318 3.99888 4.10939 4.33255 4.40337 4.78406 4.93715 4.99297 5.11679 5.11845 5.15587 5.23432 5.27238 5.32938 5.60955 5.78536 5.83011 5.96297 6.25622 6.53617 6.99408 7.09927 7.44637 7.56257 7.58884 8.06858 8.62131 9.18664 9.54904 10.06322 10.77219 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.045135 B = 0.002934 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.206253 B = 9540.306468 C = 9652.732823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.664 5.664 14 C 0.048 3.952 15 C 0.099 3.901 16 N -0.572 5.572 17 C 0.524 3.476 18 O -0.480 6.480 19 C -0.157 4.157 20 C -0.157 4.157 21 C 0.523 3.477 22 O -0.474 6.474 23 H 0.272 0.728 24 H 0.392 0.608 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.352 0.648 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.100 -24.154 0.847 24.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.297 5.297 14 C -0.082 4.082 15 C -0.022 4.022 16 N -0.316 5.316 17 C 0.312 3.688 18 O -0.351 6.351 19 C -0.197 4.197 20 C -0.197 4.197 21 C 0.312 3.688 22 O -0.345 6.345 23 H 0.082 0.918 24 H 0.226 0.774 25 H 0.105 0.895 26 H 0.063 0.937 27 H 0.171 0.829 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.078 -23.504 0.163 23.596 hybrid contribution -0.622 0.902 0.903 1.420 sum -2.700 -22.602 1.066 22.787 Atomic orbital electron populations 1.69606 1.05952 1.28285 1.50525 1.25269 0.95640 0.99740 0.97276 0.85905 0.78751 0.80391 0.79095 1.19850 1.20973 1.19903 1.19666 0.93376 0.82224 1.47702 0.87930 1.41844 1.09206 1.04565 1.64317 1.19749 0.88371 0.84659 0.84584 1.90522 1.13712 1.87034 1.55412 1.21667 0.94238 0.90741 1.01370 1.59950 1.18973 0.99419 1.51372 1.22176 0.95661 0.89304 1.01082 1.21756 0.95119 0.79637 1.05676 1.46756 1.53433 1.22044 1.09367 1.20870 0.77652 0.86365 0.83865 1.90807 1.52415 1.70608 1.21261 1.22476 1.04220 0.97001 0.95981 1.22483 1.04290 0.97004 0.95891 1.20860 0.77713 0.86382 0.83875 1.90824 1.52102 1.70360 1.21197 0.91807 0.77438 0.89457 0.93700 0.82896 0.94990 0.90570 0.87604 0.88742 0.86097 0.86184 0.86094 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.53 9.68 -14.94 -0.14 -8.67 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.59 5.29 -10.97 -0.06 -14.65 16 10 C 0.44 10.72 7.82 -10.99 -0.09 10.63 16 11 O -0.58 -16.19 15.78 5.55 0.09 -16.10 16 12 C 0.05 0.97 6.17 -4.98 -0.03 0.94 16 13 N -0.66 -11.26 6.12 -115.06 -0.70 -11.96 16 14 C 0.05 0.65 6.01 -3.83 -0.02 0.63 16 15 C 0.10 1.17 5.82 -4.04 -0.02 1.15 16 16 N -0.57 -5.62 2.55 -115.34 -0.29 -5.92 16 17 C 0.52 4.72 8.08 -11.09 -0.09 4.63 16 18 O -0.48 -6.15 17.47 5.60 0.10 -6.05 16 19 C -0.16 -0.59 7.03 -26.94 -0.19 -0.78 16 20 C -0.16 -0.60 7.03 -26.94 -0.19 -0.79 16 21 C 0.52 4.77 8.08 -11.08 -0.09 4.68 16 22 O -0.47 -6.23 17.48 5.60 0.10 -6.13 16 23 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 25 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.35 6.04 8.43 -39.29 -0.33 5.71 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.11 1.32 7.83 -51.93 -0.41 0.92 16 31 H 0.09 1.10 7.82 -51.93 -0.41 0.69 16 32 H 0.12 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -35.46 312.40 -5.69 -41.15 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -4.36 Total: 9.88 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -0.96 Total: 12.92 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.33 Total: -56.70 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: 0.28 Total: -28.28 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.46 -5.69 -41.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405385835.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.409 kcal (2) G-P(sol) polarization free energy of solvation -35.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds