Wall clock time and date at job start Mon Mar 30 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48495 * 109.47201 * 240.00824 * 3 2 1 5 5 H 1.48506 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47090 * 120.00481 * 3 2 1 7 7 C 1.38951 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99557 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00193 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99807 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99855 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46800 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47473 * 179.97438 * 15 14 13 17 17 C 1.33875 * 122.76488 * 269.71158 * 16 15 14 18 18 O 1.21230 * 125.39200 * 359.97438 * 17 16 15 19 19 C 1.51315 * 109.20750 * 179.83865 * 17 16 15 20 20 C 1.54230 * 103.55426 * 0.38916 * 19 17 16 21 21 C 1.33875 * 122.75903 * 89.99982 * 16 15 14 22 22 O 1.21226 * 125.40090 * 359.97438 * 21 16 15 23 23 H 0.96998 * 120.00315 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00240 * 0.02562 * 9 7 2 25 25 H 1.08995 * 109.47455 * 60.00021 * 12 10 9 26 26 H 1.09003 * 109.47449 * 299.99253 * 12 10 9 27 27 H 1.00902 * 111.00190 * 56.03702 * 13 12 10 28 28 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 29 29 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 30 30 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 31 31 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 32 32 H 1.08998 * 110.79380 * 241.77795 * 19 17 16 33 33 H 1.09002 * 110.54273 * 118.87508 * 19 17 16 34 34 H 1.08995 * 110.60329 * 241.25892 * 20 19 17 35 35 H 1.08997 * 110.60287 * 118.29489 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6965 -1.2126 5 1 1.2831 2.7465 0.0006 6 1 3.1020 1.6964 1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0004 14 6 1.4982 -7.2708 -0.0015 15 6 2.5231 -8.4068 -0.0014 16 7 1.8248 -9.6946 -0.0019 17 6 1.4840 -10.3345 1.1236 18 8 1.7039 -9.9411 2.2490 19 6 0.7778 -11.6248 0.7683 20 6 0.7785 -11.6244 -0.7740 21 6 1.4799 -10.3312 -1.1280 22 8 1.6949 -9.9343 -2.2531 23 1 -0.4850 0.8400 0.0004 24 1 0.3535 -2.3907 -0.0005 25 1 0.6175 -4.9205 -0.8913 26 1 0.6169 -4.9209 0.8887 27 1 2.8328 -5.9124 0.7814 28 1 0.8723 -7.3455 0.8878 29 1 0.8743 -7.3450 -0.8922 30 1 3.1486 -8.3319 -0.8909 31 1 3.1474 -8.3328 0.8890 32 1 -0.2425 -11.6256 1.1516 33 1 1.3313 -12.4819 1.1520 34 1 -0.2415 -11.6252 -1.1580 35 1 1.3345 -12.4799 -1.1574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405385835.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:24 Heat of formation + Delta-G solvation = -126.530372 kcal Electronic energy + Delta-G solvation = -19727.423375 eV Core-core repulsion = 16338.548010 eV Total energy + Delta-G solvation = -3388.875365 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.85178 -40.22026 -39.65213 -37.51653 -36.77770 -35.93730 -34.25046 -33.29715 -30.51536 -27.78660 -27.08701 -25.79925 -23.62481 -23.28110 -21.25406 -20.43766 -19.93385 -18.34614 -18.19536 -17.63153 -17.54306 -17.04770 -16.52530 -16.10611 -15.75990 -15.48557 -15.29548 -15.17461 -14.88663 -14.80852 -14.55823 -13.99325 -13.64619 -13.51543 -13.38769 -13.08924 -12.87061 -12.46181 -12.40718 -12.13540 -12.07410 -11.66296 -11.53537 -11.08058 -10.95375 -10.41237 -10.05781 -9.53579 -8.49423 -5.98833 0.49809 1.38365 1.40223 1.44896 1.52011 1.71165 1.99596 2.27368 2.85368 3.17183 3.22978 3.29331 3.44834 3.66119 3.78420 3.88211 4.21366 4.21885 4.25893 4.32627 4.40947 4.50126 4.58961 4.75681 4.80781 4.93477 4.96698 5.37881 5.71392 5.83003 5.99627 6.20864 6.33246 6.55734 6.73599 7.08487 7.50862 8.05887 8.67855 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.045135 B = 0.002934 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.206253 B = 9540.306468 C = 9652.732823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.995 3.005 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.338 4.338 8 H 0.080 0.920 9 N -0.570 5.570 10 C 0.437 3.563 11 O -0.622 6.622 12 C 0.066 3.934 13 N -0.678 5.678 14 C 0.059 3.941 15 C 0.101 3.899 16 N -0.578 5.578 17 C 0.518 3.482 18 O -0.525 6.525 19 C -0.139 4.139 20 C -0.139 4.139 21 C 0.517 3.483 22 O -0.523 6.523 23 H 0.279 0.721 24 H 0.397 0.603 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.348 0.652 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.472 -25.893 0.979 26.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.098 0.902 9 N -0.207 5.207 10 C 0.224 3.776 11 O -0.509 6.509 12 C -0.066 4.066 13 N -0.311 5.311 14 C -0.071 4.071 15 C -0.021 4.021 16 N -0.321 5.321 17 C 0.310 3.690 18 O -0.399 6.399 19 C -0.178 4.178 20 C -0.178 4.178 21 C 0.308 3.692 22 O -0.397 6.397 23 H 0.088 0.912 24 H 0.231 0.769 25 H 0.122 0.878 26 H 0.086 0.914 27 H 0.167 0.833 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.493 -25.288 0.296 25.530 hybrid contribution -0.189 1.396 0.861 1.651 sum -3.681 -23.892 1.157 24.202 Atomic orbital electron populations 1.69666 1.06878 1.29504 1.50016 1.26078 0.96576 1.02495 0.96056 0.84965 0.77769 0.76452 0.79006 1.19691 1.19317 1.19599 1.19660 0.92781 0.83988 1.50269 0.90239 1.41905 1.09358 1.04666 1.64818 1.20748 0.88237 0.86065 0.82530 1.90489 1.15761 1.87910 1.56733 1.21524 0.93879 0.87967 1.03226 1.59928 1.19267 1.00427 1.51515 1.22114 0.95794 0.88034 1.01172 1.21516 0.94862 0.80803 1.04915 1.46979 1.53282 1.21263 1.10572 1.21868 0.76801 0.87642 0.82735 1.90787 1.54311 1.72018 1.22832 1.22606 1.05110 0.94324 0.95787 1.22612 1.05151 0.94232 0.95803 1.21883 0.76814 0.87706 0.82751 1.90801 1.54138 1.71857 1.22901 0.91172 0.76913 0.87751 0.91362 0.83288 0.94352 0.90632 0.88856 0.89038 0.83556 0.83385 0.83582 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.37 13.05 21.66 0.28 -50.09 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.34 -19.62 9.68 84.04 0.81 -18.80 16 8 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 9 N -0.57 -30.15 5.29 -306.99 -1.62 -31.77 16 10 C 0.44 21.63 7.82 87.65 0.69 22.32 16 11 O -0.62 -35.68 15.78 -3.06 -0.05 -35.73 16 12 C 0.07 2.42 6.17 85.55 0.53 2.95 16 13 N -0.68 -23.17 6.12 -517.93 -3.17 -26.34 16 14 C 0.06 1.57 6.01 86.30 0.52 2.09 16 15 C 0.10 2.45 5.82 86.38 0.50 2.95 16 16 N -0.58 -10.88 2.55 -756.66 -1.93 -12.81 16 17 C 0.52 8.46 8.08 87.99 0.71 9.17 16 18 O -0.53 -13.16 17.47 -2.87 -0.05 -13.21 16 19 C -0.14 -0.47 7.03 30.46 0.21 -0.26 16 20 C -0.14 -0.49 7.03 30.46 0.21 -0.28 16 21 C 0.52 8.67 8.08 87.99 0.71 9.38 16 22 O -0.52 -13.63 17.48 -2.86 -0.05 -13.68 16 23 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 24 H 0.40 19.85 7.90 -92.71 -0.73 19.12 16 25 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 26 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.35 12.26 8.43 -89.69 -0.76 11.50 16 28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.09 2.46 7.83 -2.39 -0.02 2.44 16 31 H 0.09 2.22 7.82 -2.39 -0.02 2.20 16 32 H 0.15 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.15 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 Total: -1.00 -79.88 312.40 0.45 -79.44 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -0.35 Total: 29.30 kcal Atomic # 6 Polarization: 23.96 SS G_CDS: 5.36 Total: 29.33 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -6.44 Total: -121.02 kcal Atomic # 8 Polarization: -62.47 SS G_CDS: -0.15 Total: -62.62 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -79.88 0.45 -79.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405385835.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.095 kcal (2) G-P(sol) polarization free energy of solvation -79.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds