Wall clock time and date at job start Mon Mar 30 2020 05:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 120.00455 * 2 1 4 4 N 1.46892 * 109.47281 * 125.00230 * 3 2 1 5 5 C 1.46904 * 110.99800 * 293.28356 * 4 3 2 6 6 C 1.50703 * 109.47010 * 160.90845 * 5 4 3 7 7 H 1.08003 * 119.99744 * 4.58506 * 6 5 4 8 8 C 1.37882 * 119.99840 * 184.58293 * 6 5 4 9 9 N 1.31509 * 120.00222 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99573 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47186 * 90.00333 * 10 8 6 12 12 H 1.48504 * 109.46760 * 209.99810 * 10 8 6 13 13 H 1.48498 * 109.47307 * 329.99898 * 10 8 6 14 14 C 1.46900 * 110.99909 * 169.33406 * 4 3 2 15 15 C 1.50700 * 109.46584 * 293.94899 * 14 4 3 16 16 N 1.30851 * 125.89525 * 270.28600 * 15 14 4 17 17 N 1.40084 * 108.22375 * 180.14422 * 16 15 14 18 18 C 1.46506 * 126.03339 * 179.88411 * 17 16 15 19 19 C 1.35040 * 107.92845 * 359.60891 * 17 16 15 20 20 C 1.35381 * 107.72557 * 0.23567 * 19 17 16 21 21 Cl 1.73596 * 126.04310 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99266 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.00195 * 180.02562 * 1 2 3 24 24 H 1.08001 * 120.00012 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.46959 * 4.99737 * 3 2 1 26 26 H 1.08998 * 109.46844 * 245.00298 * 3 2 1 27 27 H 1.09000 * 109.46986 * 280.90566 * 5 4 3 28 28 H 1.09005 * 109.47445 * 40.91057 * 5 4 3 29 29 H 0.96997 * 119.99911 * 180.02562 * 9 8 6 30 30 H 1.09003 * 109.46930 * 173.95513 * 14 4 3 31 31 H 1.09001 * 109.47549 * 53.95139 * 14 4 3 32 32 H 1.09004 * 109.46651 * 269.67944 * 18 17 16 33 33 H 1.08989 * 109.47481 * 29.68067 * 18 17 16 34 34 H 1.09005 * 109.46877 * 149.68538 * 18 17 16 35 35 H 1.08001 * 126.13886 * 180.20413 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9965 1.3319 1.1344 5 6 2.2713 1.3631 2.4116 6 6 3.1908 0.9244 3.5221 7 1 4.2308 0.7212 3.3136 8 6 2.7042 0.7826 4.8045 9 7 1.4377 1.0295 5.0583 10 14 3.8442 0.2396 6.1811 11 1 4.4606 1.4335 6.8132 12 1 3.0677 -0.5138 7.1984 13 1 4.9101 -0.6327 5.6261 14 6 3.9230 2.4667 1.0273 15 6 4.8188 2.2726 -0.1689 16 7 5.9724 1.6549 -0.1713 17 7 6.4875 1.6939 -1.4734 18 6 7.7617 1.1204 -1.9137 19 6 5.5994 2.3482 -2.2523 20 6 4.5579 2.7168 -1.4698 21 17 3.1484 3.5873 -1.9887 22 1 -0.5399 0.9354 0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3587 2.1316 0.0895 26 1 2.6214 1.4025 -0.9314 27 1 1.9234 2.3774 2.6072 28 1 1.4161 0.6891 2.3605 29 1 1.0956 0.9301 5.9605 30 1 4.5306 2.5262 1.9304 31 1 3.3552 3.3897 0.9100 32 1 8.5497 1.8670 -1.8145 33 1 8.0024 0.2541 -1.2977 34 1 7.6810 0.8137 -2.9565 35 1 5.7017 2.5429 -3.3097 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420959987.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:41 Heat of formation + Delta-G solvation = 103.143043 kcal Electronic energy + Delta-G solvation = -18375.221548 eV Core-core repulsion = 15437.014735 eV Total energy + Delta-G solvation = -2938.206814 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.16336 -37.11607 -36.24753 -33.59463 -32.93775 -31.93405 -29.96833 -28.17350 -26.95832 -25.35798 -23.53844 -21.19870 -20.94551 -19.55390 -18.96739 -17.06566 -16.35178 -15.65286 -15.12489 -14.63321 -14.40666 -14.18632 -13.98170 -13.78318 -13.19699 -12.84140 -12.80225 -12.30262 -11.98821 -11.67198 -11.36843 -11.21284 -11.04943 -11.00234 -10.60974 -10.55260 -10.36307 -10.12557 -9.89610 -9.27913 -9.08129 -8.68592 -8.33188 -8.28648 -7.21155 -5.93450 -3.93859 1.81430 2.07194 2.69784 2.90853 2.94264 3.38149 3.43969 3.49817 4.51142 4.53110 4.66839 4.98550 5.03372 5.19183 5.27644 5.42593 5.46476 5.62535 5.69432 5.80777 6.13924 6.18190 6.35432 6.35789 6.53609 6.64805 6.88627 7.20129 7.30721 7.31778 7.44860 7.78597 7.91846 8.17845 8.25796 8.61867 9.14222 9.69614 11.17125 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.006202 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.794870 B = 4513.566840 C = 5521.346870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C 0.075 3.925 4 N -0.523 5.523 5 C 0.193 3.807 6 C -0.503 4.503 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.135 3.865 15 C 0.115 3.885 16 N -0.261 5.261 17 N -0.377 5.377 18 C 0.106 3.894 19 C 0.063 3.937 20 C -0.184 4.184 21 Cl -0.045 7.045 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.107 0.893 25 H 0.028 0.972 26 H 0.075 0.925 27 H -0.010 1.010 28 H 0.042 0.958 29 H 0.260 0.740 30 H 0.101 0.899 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.562 2.766 -17.058 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.138 4.138 3 C -0.053 4.053 4 N -0.248 5.248 5 C 0.068 3.932 6 C -0.541 4.541 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.198 1.198 14 C 0.005 3.995 15 C -0.053 4.053 16 N -0.083 5.083 17 N -0.159 5.159 18 C -0.035 4.035 19 C -0.085 4.085 20 C -0.223 4.223 21 Cl -0.017 7.017 22 H 0.108 0.892 23 H 0.110 0.890 24 H 0.125 0.875 25 H 0.046 0.954 26 H 0.093 0.907 27 H 0.008 0.992 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.624 1.713 -16.314 18.533 hybrid contribution -0.625 0.867 0.195 1.086 sum 7.999 2.579 -16.119 18.178 Atomic orbital electron populations 1.23656 0.95938 1.01070 1.03806 1.22847 0.95370 0.98778 0.96852 1.21365 0.94399 0.94012 0.95527 1.62098 1.18656 1.40371 1.03715 1.19803 0.94019 0.95841 0.83528 1.21200 0.96451 1.44588 0.91906 0.91791 1.24963 0.95072 0.95804 0.98724 1.69960 1.13311 1.49932 1.20729 0.86541 0.80740 0.78681 0.81725 1.20803 1.21385 1.19805 1.20395 0.93019 0.92942 0.93133 1.22538 0.93252 0.94788 0.94730 1.77647 1.11770 1.22145 0.96749 1.48364 1.16944 1.43804 1.06742 1.21850 0.81139 0.99753 1.00762 1.22085 0.90444 0.98087 0.97858 1.20755 0.94168 1.12900 0.94447 1.98310 1.38169 1.74909 1.90340 0.89176 0.89034 0.87542 0.95364 0.90721 0.99197 0.93968 0.93053 0.88099 0.93463 0.90708 0.88941 0.89575 0.80460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.56 14.30 29.01 0.41 -3.15 16 2 C -0.12 -2.27 8.47 -36.03 -0.30 -2.57 16 3 C 0.07 1.46 4.74 -4.98 -0.02 1.43 16 4 N -0.52 -11.74 4.41 -238.96 -1.05 -12.80 16 5 C 0.19 5.10 4.61 -4.97 -0.02 5.08 16 6 C -0.50 -14.41 8.59 -34.44 -0.30 -14.70 16 7 H 0.06 1.84 7.63 -52.48 -0.40 1.44 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 10 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.13 2.75 5.22 -4.98 -0.03 2.73 16 15 C 0.12 2.09 6.10 -82.38 -0.50 1.59 16 16 N -0.26 -4.69 12.57 33.68 0.42 -4.26 16 17 N -0.38 -4.98 4.02 -68.12 -0.27 -5.25 16 18 C 0.11 0.84 11.47 59.85 0.69 1.52 16 19 C 0.06 0.76 11.48 -17.16 -0.20 0.57 16 20 C -0.18 -2.78 5.56 -39.97 -0.22 -3.00 16 21 Cl -0.05 -0.63 27.21 -51.86 -1.41 -2.05 16 22 H 0.09 1.50 7.84 -52.49 -0.41 1.09 16 23 H 0.09 1.41 8.06 -52.49 -0.42 0.99 16 24 H 0.11 2.02 8.06 -52.49 -0.42 1.60 16 25 H 0.03 0.55 7.77 -51.93 -0.40 0.15 16 26 H 0.07 1.36 4.74 -51.93 -0.25 1.12 16 27 H -0.01 -0.27 8.01 -51.93 -0.42 -0.69 16 28 H 0.04 1.20 6.87 -51.93 -0.36 0.84 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.10 2.23 7.28 -51.93 -0.38 1.85 16 31 H 0.05 0.92 7.98 -51.93 -0.41 0.51 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.18 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 313.35 15.07 4.72 4.72 Total: -1.00 -32.79 313.35 -7.16 -39.95 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.70 Total: -2.10 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -0.59 Total: -9.01 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.17 Total: -48.67 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.41 Total: -2.05 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.79 -7.16 -39.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420959987.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.094 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds