Wall clock time and date at job start Mon Mar 30 2020 05:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 120.00455 * 2 1 4 4 N 1.46892 * 109.47281 * 125.00230 * 3 2 1 5 5 C 1.46904 * 110.99800 * 293.28356 * 4 3 2 6 6 C 1.50703 * 109.47010 * 160.90845 * 5 4 3 7 7 H 1.08003 * 119.99744 * 4.58506 * 6 5 4 8 8 C 1.37882 * 119.99840 * 184.58293 * 6 5 4 9 9 N 1.31509 * 120.00222 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99573 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47186 * 90.00333 * 10 8 6 12 12 H 1.48504 * 109.46760 * 209.99810 * 10 8 6 13 13 H 1.48498 * 109.47307 * 329.99898 * 10 8 6 14 14 C 1.46900 * 110.99909 * 169.33406 * 4 3 2 15 15 C 1.50700 * 109.46584 * 293.94899 * 14 4 3 16 16 N 1.30851 * 125.89525 * 270.28600 * 15 14 4 17 17 N 1.40084 * 108.22375 * 180.14422 * 16 15 14 18 18 C 1.46506 * 126.03339 * 179.88411 * 17 16 15 19 19 C 1.35040 * 107.92845 * 359.60891 * 17 16 15 20 20 C 1.35381 * 107.72557 * 0.23567 * 19 17 16 21 21 Cl 1.73596 * 126.04310 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99266 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.00195 * 180.02562 * 1 2 3 24 24 H 1.08001 * 120.00012 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.46959 * 4.99737 * 3 2 1 26 26 H 1.08998 * 109.46844 * 245.00298 * 3 2 1 27 27 H 1.09000 * 109.46986 * 280.90566 * 5 4 3 28 28 H 1.09005 * 109.47445 * 40.91057 * 5 4 3 29 29 H 0.96997 * 119.99911 * 180.02562 * 9 8 6 30 30 H 1.09003 * 109.46930 * 173.95513 * 14 4 3 31 31 H 1.09001 * 109.47549 * 53.95139 * 14 4 3 32 32 H 1.09004 * 109.46651 * 269.67944 * 18 17 16 33 33 H 1.08989 * 109.47481 * 29.68067 * 18 17 16 34 34 H 1.09005 * 109.46877 * 149.68538 * 18 17 16 35 35 H 1.08001 * 126.13886 * 180.20413 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9965 1.3319 1.1344 5 6 2.2713 1.3631 2.4116 6 6 3.1908 0.9244 3.5221 7 1 4.2308 0.7212 3.3136 8 6 2.7042 0.7826 4.8045 9 7 1.4377 1.0295 5.0583 10 14 3.8442 0.2396 6.1811 11 1 4.4606 1.4335 6.8132 12 1 3.0677 -0.5138 7.1984 13 1 4.9101 -0.6327 5.6261 14 6 3.9230 2.4667 1.0273 15 6 4.8188 2.2726 -0.1689 16 7 5.9724 1.6549 -0.1713 17 7 6.4875 1.6939 -1.4734 18 6 7.7617 1.1204 -1.9137 19 6 5.5994 2.3482 -2.2523 20 6 4.5579 2.7168 -1.4698 21 17 3.1484 3.5873 -1.9887 22 1 -0.5399 0.9354 0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3587 2.1316 0.0895 26 1 2.6214 1.4025 -0.9314 27 1 1.9234 2.3774 2.6072 28 1 1.4161 0.6891 2.3605 29 1 1.0956 0.9301 5.9605 30 1 4.5306 2.5262 1.9304 31 1 3.3552 3.3897 0.9100 32 1 8.5497 1.8670 -1.8145 33 1 8.0024 0.2541 -1.2977 34 1 7.6810 0.8137 -2.9565 35 1 5.7017 2.5429 -3.3097 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420959987.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:40 Heat of formation + Delta-G solvation = 81.145737 kcal Electronic energy + Delta-G solvation = -18376.175423 eV Core-core repulsion = 15437.014735 eV Total energy + Delta-G solvation = -2939.160688 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.29436 -38.79080 -37.35936 -34.94971 -34.79553 -33.50509 -31.06735 -29.83821 -28.62153 -26.62651 -25.35694 -22.72898 -22.23563 -20.88403 -20.48516 -18.52134 -18.08846 -17.06949 -16.58842 -16.24088 -15.90876 -15.48047 -15.40147 -15.10065 -14.73620 -14.14137 -14.00208 -13.74546 -13.39203 -13.12941 -12.90490 -12.89511 -12.59533 -12.55998 -12.36915 -12.25021 -12.07401 -11.69528 -11.36472 -11.29073 -10.59551 -10.37670 -10.14860 -9.38161 -9.03030 -8.16102 -6.25049 0.76887 1.07825 1.36918 1.41125 1.42064 1.54147 1.54242 1.87264 2.42969 3.14971 3.42724 3.57854 3.76473 4.08113 4.18302 4.28027 4.30599 4.47893 4.55013 4.63578 4.68741 4.73625 4.78220 4.88975 5.06743 5.19680 5.26912 5.31583 5.67380 5.75008 5.88657 5.99453 6.12228 6.34141 6.57419 6.65796 6.89325 7.43334 8.94311 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.006202 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.794870 B = 4513.566840 C = 5521.346870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.148 4.148 3 C 0.083 3.917 4 N -0.531 5.531 5 C 0.211 3.789 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.964 3.036 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.270 1.270 14 C 0.141 3.859 15 C 0.094 3.906 16 N -0.306 5.306 17 N -0.368 5.368 18 C 0.094 3.906 19 C 0.091 3.909 20 C -0.207 4.207 21 Cl -0.042 7.042 22 H 0.095 0.905 23 H 0.113 0.887 24 H 0.103 0.897 25 H 0.024 0.976 26 H 0.089 0.911 27 H -0.037 1.037 28 H 0.020 0.980 29 H 0.264 0.736 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.909 2.351 -18.882 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.167 4.167 3 C -0.045 4.045 4 N -0.256 5.256 5 C 0.085 3.915 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.789 3.211 11 H -0.198 1.198 12 H -0.205 1.205 13 H -0.194 1.194 14 C 0.012 3.988 15 C -0.073 4.073 16 N -0.130 5.130 17 N -0.149 5.149 18 C -0.045 4.045 19 C -0.058 4.058 20 C -0.246 4.246 21 Cl -0.014 7.014 22 H 0.113 0.887 23 H 0.131 0.869 24 H 0.121 0.879 25 H 0.042 0.958 26 H 0.107 0.893 27 H -0.019 1.019 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.145 0.855 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 9.990 1.297 -18.152 20.760 hybrid contribution -0.997 0.999 0.649 1.553 sum 8.993 2.296 -17.504 19.812 Atomic orbital electron populations 1.23893 0.95432 1.02354 1.01056 1.22863 0.96124 0.98282 0.99384 1.21348 0.93961 0.94331 0.94822 1.61998 1.19036 1.41618 1.02944 1.19399 0.93257 0.93414 0.85382 1.21435 0.96340 1.44872 0.93111 0.92666 1.25813 0.96637 0.95628 1.01191 1.70073 1.14992 1.50629 1.21527 0.85470 0.78693 0.78513 0.78466 1.19800 1.20495 1.19439 1.20149 0.92741 0.92279 0.93660 1.22083 0.93583 0.96704 0.94960 1.77517 1.12200 1.23263 0.99987 1.48794 1.18097 1.42810 1.05226 1.22341 0.79385 1.00020 1.02780 1.22800 0.88393 0.95232 0.99399 1.20838 0.95626 1.14378 0.93730 1.98304 1.38138 1.74862 1.90062 0.88679 0.86897 0.87900 0.95816 0.89260 1.01886 0.96197 0.92724 0.90963 0.93424 0.88751 0.89523 0.85513 0.75436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.40 14.30 67.78 0.97 -5.43 16 2 C -0.15 -5.63 8.47 25.64 0.22 -5.41 16 3 C 0.08 3.28 4.74 85.56 0.41 3.69 16 4 N -0.53 -24.79 4.41 -909.93 -4.01 -28.80 16 5 C 0.21 11.72 4.61 85.56 0.39 12.12 16 6 C -0.52 -30.79 8.59 25.60 0.22 -30.57 16 7 H 0.06 3.30 7.63 -2.91 -0.02 3.28 16 8 C 0.01 0.31 5.46 84.66 0.46 0.77 16 9 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 10 Si 0.96 46.05 29.54 68.60 2.03 48.07 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 13 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 14 C 0.14 6.05 5.22 85.56 0.45 6.50 16 15 C 0.09 3.42 6.10 43.11 0.26 3.68 16 16 N -0.31 -10.91 12.57 -47.34 -0.60 -11.51 16 17 N -0.37 -8.79 4.02 -369.42 -1.48 -10.27 16 18 C 0.09 1.15 11.47 127.77 1.47 2.61 16 19 C 0.09 1.91 11.48 83.54 0.96 2.86 16 20 C -0.21 -5.97 5.56 22.02 0.12 -5.85 16 21 Cl -0.04 -1.12 27.21 -2.72 -0.07 -1.19 16 22 H 0.09 3.10 7.84 -2.91 -0.02 3.07 16 23 H 0.11 3.29 8.06 -2.91 -0.02 3.27 16 24 H 0.10 3.95 8.06 -2.91 -0.02 3.93 16 25 H 0.02 0.95 7.77 -2.39 -0.02 0.93 16 26 H 0.09 3.26 4.74 -2.39 -0.01 3.25 16 27 H -0.04 -2.17 8.01 -2.39 -0.02 -2.19 16 28 H 0.02 1.18 6.87 -2.38 -0.02 1.16 16 29 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.07 3.42 7.28 -2.39 -0.02 3.40 16 31 H 0.05 1.97 7.98 -2.39 -0.02 1.95 16 32 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.13 0.57 8.14 -2.38 -0.02 0.56 16 35 H 0.23 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -73.42 313.35 3.15 -70.27 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 1.07 Total: 5.39 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 5.92 Total: -15.03 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -5.80 Total: -107.52 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.07 Total: -1.19 kcal Total: -73.42 3.15 -70.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420959987.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.416 kcal (2) G-P(sol) polarization free energy of solvation -73.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds