Wall clock time and date at job start Mon Mar 30 2020 05:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35376 * 126.13738 * 2 1 4 4 Cl 1.73602 * 126.04279 * 359.97438 * 3 2 1 5 5 C 1.39925 * 107.90667 * 180.13178 * 3 2 1 6 6 C 1.50702 * 125.89075 * 179.88240 * 5 3 2 7 7 N 1.46498 * 109.47588 * 269.71647 * 6 5 3 8 8 C 1.36937 * 119.99808 * 89.99736 * 7 6 5 9 9 H 1.08000 * 120.00212 * 218.52818 * 8 7 6 10 10 C 1.38812 * 119.99875 * 38.80380 * 8 7 6 11 11 N 1.31615 * 120.00167 * 19.00638 * 10 8 7 12 12 Si 1.86806 * 120.00116 * 199.00465 * 10 8 7 13 13 H 1.48502 * 109.46869 * 59.99722 * 12 10 8 14 14 H 1.48491 * 109.47442 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46774 * 300.00370 * 12 10 8 16 16 C 1.46499 * 120.00097 * 270.00433 * 7 6 5 17 17 C 1.53003 * 117.49749 * 194.13220 * 16 7 6 18 18 C 1.52996 * 117.49910 * 125.47118 * 16 7 6 19 19 N 1.30849 * 108.21695 * 359.62389 * 5 3 2 20 20 N 1.35042 * 126.13394 * 179.71625 * 2 1 3 21 21 C 1.46501 * 126.04233 * 359.97438 * 20 2 1 22 22 H 1.08990 * 109.47512 * 270.28056 * 1 2 3 23 23 H 1.08997 * 109.46493 * 30.28409 * 1 2 3 24 24 H 1.08998 * 109.46905 * 150.27657 * 1 2 3 25 25 H 1.09002 * 109.46964 * 149.71650 * 6 5 3 26 26 H 1.09001 * 109.47133 * 29.72291 * 6 5 3 27 27 H 0.96998 * 120.00214 * 174.94048 * 11 10 8 28 28 H 1.09006 * 115.54946 * 339.79738 * 16 7 6 29 29 H 1.08997 * 117.49757 * 0.02562 * 17 16 7 30 30 H 1.08999 * 117.49567 * 145.01860 * 17 16 7 31 31 H 1.09001 * 117.49664 * 214.97578 * 18 16 7 32 32 H 1.08992 * 117.49850 * 359.97438 * 18 16 7 33 33 H 1.09000 * 109.46872 * 270.00015 * 21 20 2 34 34 H 1.08997 * 109.46922 * 29.99732 * 21 20 2 35 35 H 1.08992 * 109.47579 * 149.99678 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3054 1.0933 0.0000 4 17 1.7741 2.7460 -0.0006 5 6 3.6344 0.6556 -0.0031 6 6 4.8555 1.5388 -0.0066 7 7 5.2518 1.8187 -1.3889 8 6 4.7419 2.9104 -2.0397 9 1 4.4817 2.8427 -3.0857 10 6 4.5648 4.1056 -1.3563 11 7 5.2084 4.3204 -0.2285 12 14 3.4131 5.4091 -2.0373 13 1 2.0413 4.8504 -2.1445 14 1 3.3995 6.5822 -1.1270 15 1 3.8823 5.8305 -3.3817 16 6 6.1934 0.9306 -2.0751 17 6 6.8233 1.4370 -3.3743 18 6 5.7571 0.3394 -3.4171 19 7 3.6341 -0.6529 0.0033 20 7 2.3034 -1.0906 0.0054 21 6 1.8549 -2.4853 0.0128 22 1 -0.3634 0.0050 1.0275 23 1 -0.3632 0.8874 -0.5182 24 1 -0.3633 -0.8925 -0.5095 25 1 5.6713 1.0329 0.5099 26 1 4.6281 2.4752 0.5029 27 1 5.1423 5.1826 0.2110 28 1 6.8092 0.3071 -1.4268 29 1 6.5374 2.4310 -3.7182 30 1 7.8533 1.1462 -3.5809 31 1 6.0861 -0.6728 -3.6519 32 1 4.7693 0.6109 -3.7892 33 1 1.7441 -2.8258 1.0423 34 1 0.8963 -2.5614 -0.5002 35 1 2.5907 -3.1063 -0.4980 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421325472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:58 Heat of formation + Delta-G solvation = 102.166055 kcal Electronic energy + Delta-G solvation = -19093.894944 eV Core-core repulsion = 16155.645766 eV Total energy + Delta-G solvation = -2938.249179 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.13055 -38.70978 -37.09135 -35.61080 -34.35149 -32.66048 -32.27507 -28.80961 -27.78184 -26.59406 -25.04526 -22.95294 -21.76826 -21.20576 -20.47742 -18.24029 -17.60785 -17.10571 -16.67140 -16.16182 -15.72852 -15.49069 -14.93951 -14.62145 -14.18192 -14.06680 -13.67760 -13.42927 -13.25074 -13.14157 -12.98551 -12.76652 -12.51319 -12.34211 -12.19800 -12.18033 -11.94184 -11.82240 -11.44049 -11.09858 -10.94300 -10.35843 -9.97749 -9.08545 -8.38729 -7.80405 -5.38780 0.85330 1.27095 1.44998 1.46701 1.52589 1.72053 2.10278 2.52895 3.25365 3.47508 3.62397 3.73959 3.81502 4.12297 4.30056 4.38814 4.44568 4.49280 4.54849 4.61735 4.65964 4.72636 4.92386 4.93725 5.02735 5.04474 5.16838 5.33819 5.49301 5.55139 5.68530 5.77496 6.15856 6.53106 6.81016 7.20356 7.86294 8.40724 9.19991 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.016225 B = 0.009943 C = 0.007020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.287554 B = 2815.430880 C = 3987.487456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.090 3.910 3 C -0.199 4.199 4 Cl -0.052 7.052 5 C 0.082 3.918 6 C 0.220 3.780 7 N -0.548 5.548 8 C -0.256 4.256 9 H 0.041 0.959 10 C 0.012 3.988 11 N -0.906 5.906 12 Si 0.917 3.083 13 H -0.267 1.267 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.108 3.892 17 C -0.185 4.185 18 C -0.206 4.206 19 N -0.318 5.318 20 N -0.374 5.374 21 C 0.096 3.904 22 H 0.100 0.900 23 H 0.080 0.920 24 H 0.102 0.898 25 H 0.038 0.962 26 H 0.100 0.900 27 H 0.254 0.746 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.351 -11.787 1.205 15.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.040 4.040 3 C -0.238 4.238 4 Cl -0.024 7.024 5 C -0.087 4.087 6 C 0.091 3.909 7 N -0.265 5.265 8 C -0.386 4.386 9 H 0.059 0.941 10 C -0.188 4.188 11 N -0.549 5.549 12 Si 0.745 3.255 13 H -0.193 1.193 14 H -0.217 1.217 15 H -0.207 1.207 16 C 0.000 4.000 17 C -0.224 4.224 18 C -0.247 4.247 19 N -0.141 5.141 20 N -0.157 5.157 21 C -0.043 4.043 22 H 0.119 0.881 23 H 0.098 0.902 24 H 0.121 0.879 25 H 0.056 0.944 26 H 0.117 0.883 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.134 0.866 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.770 -12.728 1.390 15.519 hybrid contribution -0.854 1.885 -0.454 2.119 sum -9.624 -10.843 0.935 14.528 Atomic orbital electron populations 1.20591 0.83687 1.05101 1.04888 1.21182 0.96213 0.85919 1.00708 1.20644 0.93377 0.86646 1.23142 1.98285 1.89688 1.16711 1.97760 1.23705 0.97057 0.91556 0.96340 1.19358 0.88359 0.96045 0.87091 1.43269 1.46632 1.25583 1.10992 1.18656 1.36742 0.88542 0.94620 0.94129 1.25347 0.98555 0.97618 0.97240 1.69886 1.42485 1.22866 1.19678 0.86118 0.81732 0.79728 0.77889 1.19264 1.21717 1.20738 1.21318 0.94842 0.96435 0.87451 1.23065 0.97356 0.98187 1.03798 1.23196 0.98033 0.97356 1.06111 1.77333 0.97708 1.11589 1.27487 1.48623 1.03143 1.07034 1.56923 1.22209 1.02217 0.75063 1.04832 0.88145 0.90159 0.87901 0.94386 0.88268 0.93603 0.88376 0.90677 0.87772 0.88298 0.92219 0.89001 0.86628 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 9.94 71.24 0.71 -1.05 16 2 C 0.09 2.91 6.94 41.41 0.29 3.20 16 3 C -0.20 -8.31 6.63 22.02 0.15 -8.16 16 4 Cl -0.05 -2.25 27.53 -2.72 -0.07 -2.32 16 5 C 0.08 3.71 6.80 43.11 0.29 4.00 16 6 C 0.22 10.99 5.75 85.63 0.49 11.49 16 7 N -0.55 -28.09 2.76 -682.33 -1.88 -29.97 16 8 C -0.26 -14.02 8.02 84.03 0.67 -13.34 16 9 H 0.04 2.33 7.24 -2.91 -0.02 2.31 16 10 C 0.01 0.63 4.67 84.86 0.40 1.03 16 11 N -0.91 -51.56 11.40 21.65 0.25 -51.31 16 12 Si 0.92 44.73 28.89 68.60 1.98 46.71 16 13 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 15 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 16 C 0.11 4.85 6.61 44.99 0.30 5.14 16 17 C -0.19 -7.58 9.82 30.62 0.30 -7.28 16 18 C -0.21 -8.31 10.09 30.62 0.31 -8.00 16 19 N -0.32 -13.06 12.57 -47.34 -0.60 -13.66 16 20 N -0.37 -11.83 4.02 -355.92 -1.43 -13.26 16 21 C 0.10 1.73 11.28 127.77 1.44 3.17 16 22 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.08 1.80 7.91 -2.39 -0.02 1.78 16 24 H 0.10 1.42 7.08 -2.39 -0.02 1.40 16 25 H 0.04 1.85 8.04 -2.39 -0.02 1.83 16 26 H 0.10 5.46 5.37 -2.39 -0.01 5.45 16 27 H 0.25 14.15 8.32 -92.71 -0.77 13.38 16 28 H 0.10 4.14 8.10 -2.38 -0.02 4.12 16 29 H 0.07 3.45 6.97 -2.39 -0.02 3.44 16 30 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 31 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 32 H 0.06 2.66 7.99 -2.39 -0.02 2.64 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.12 1.29 7.05 -2.39 -0.02 1.27 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -67.51 309.83 4.68 -62.83 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 1.09 Total: 10.80 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 5.35 Total: -9.81 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -3.66 Total: -108.20 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.98 Total: 46.71 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.07 Total: -2.32 kcal Total: -67.51 4.68 -62.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421325472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.992 kcal (2) G-P(sol) polarization free energy of solvation -67.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds