Wall clock time and date at job start Mon Mar 30 2020 04:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 N 1.29857 * 125.54275 * 59.69048 * 4 2 1 6 6 N 1.26265 * 117.78418 * 179.79696 * 5 4 2 7 7 C 1.30755 * 116.24862 * 0.50479 * 6 5 4 8 8 C 1.47312 * 126.18953 * 179.73152 * 7 6 5 9 9 O 1.21613 * 120.00119 * 179.97438 * 8 7 6 10 10 N 1.34780 * 119.99913 * 0.02562 * 8 7 6 11 11 C 1.46494 * 120.00150 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47289 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.47202 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99719 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99958 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99929 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99832 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47151 * 90.00273 * 17 15 13 19 19 H 1.48506 * 109.47035 * 209.99839 * 17 15 13 20 20 H 1.48499 * 109.47440 * 330.00127 * 17 15 13 21 21 S 1.71272 * 125.54347 * 240.00103 * 4 2 1 22 22 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 26 26 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 27 27 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 29 29 H 0.97005 * 119.99598 * 359.97438 * 10 8 7 30 30 H 1.09001 * 109.47433 * 300.00398 * 11 10 8 31 31 H 1.09006 * 109.46854 * 60.00180 * 11 10 8 32 32 H 1.08996 * 109.47068 * 300.00571 * 12 11 10 33 33 H 1.08999 * 109.47005 * 60.00732 * 12 11 10 34 34 H 0.97004 * 119.99326 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7812 -0.3650 -2.4569 6 7 2.2825 -1.0656 -3.3800 7 6 3.0054 -2.0877 -3.0028 8 6 3.6839 -3.0481 -3.8902 9 8 4.3309 -3.9620 -3.4158 10 7 3.5885 -2.9132 -5.2278 11 6 4.2637 -3.8678 -6.1103 12 6 3.9965 -3.4911 -7.5689 13 6 4.6906 -4.4736 -8.4767 14 1 5.2645 -5.2857 -8.0554 15 6 4.5928 -4.3356 -9.8451 16 7 3.8943 -3.3463 -10.3581 17 14 5.4538 -5.5530 -10.9703 18 1 4.5389 -6.6840 -11.2684 19 1 5.8316 -4.8750 -12.2364 20 1 6.6753 -6.0676 -10.3008 21 16 3.0211 -2.1088 -1.2390 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9562 0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 3.0727 -2.1839 -5.6061 30 1 5.3365 -3.8435 -5.9190 31 1 3.8832 -4.8712 -5.9190 32 1 2.9236 -3.5158 -7.7598 33 1 4.3766 -2.4877 -7.7605 34 1 3.8259 -3.2492 -11.3208 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442559464.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:03 Heat of formation + Delta-G solvation = 4.706113 kcal Electronic energy + Delta-G solvation = -17287.852456 eV Core-core repulsion = 14347.420803 eV Total energy + Delta-G solvation = -2940.431653 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.38999 -39.26206 -36.26554 -35.05791 -32.94851 -31.30853 -29.50041 -27.59838 -27.33581 -24.91291 -23.49051 -21.72008 -20.94021 -19.46025 -19.31070 -17.13781 -16.44566 -16.11014 -15.74316 -15.26543 -14.85969 -14.61325 -14.43750 -13.72152 -13.59056 -13.41380 -13.09593 -12.55941 -12.33382 -12.17869 -11.71670 -11.63066 -11.26457 -11.06546 -10.90629 -10.70496 -10.51215 -10.40698 -10.09059 -9.98991 -9.93228 -9.61956 -9.29751 -8.69746 -8.41524 -6.09999 -4.13654 -0.15164 0.53096 1.07466 2.04355 3.12853 3.23825 3.29305 3.35724 3.39825 3.74573 4.27405 4.35349 4.43502 4.58183 4.67716 4.98558 5.17322 5.23622 5.26942 5.39041 5.41206 5.51122 5.80663 5.86840 6.19798 6.24001 6.59210 6.69011 7.46759 7.57954 7.71629 7.87230 8.16400 8.25923 8.33174 8.91946 9.51262 11.01498 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.047014 B = 0.003170 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.420115 B = 8831.743952 C = 9230.796476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.012 4.012 3 C -0.143 4.143 4 C -0.006 4.006 5 N -0.262 5.262 6 N -0.212 5.212 7 C -0.043 4.043 8 C 0.589 3.411 9 O -0.532 6.532 10 N -0.687 5.687 11 C 0.120 3.880 12 C 0.011 3.989 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.898 3.102 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 S 0.214 5.786 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.410 0.590 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.387 7.639 22.525 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 C -0.202 4.202 4 C -0.283 4.283 5 N -0.102 5.102 6 N -0.055 5.055 7 C -0.322 4.322 8 C 0.368 3.632 9 O -0.409 6.409 10 N -0.337 5.337 11 C -0.002 4.002 12 C -0.026 4.026 13 C -0.562 4.562 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.725 3.275 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 S 0.459 5.541 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.113 0.887 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.245 0.755 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.063 7.184 22.425 24.086 hybrid contribution 0.150 -0.228 -1.001 1.038 sum -4.914 6.956 21.423 23.054 Atomic orbital electron populations 1.21848 0.92202 1.02738 1.03378 1.19845 0.97338 0.96240 0.90078 1.21847 1.01401 0.93540 1.03376 1.29586 1.00491 0.98823 0.99388 1.71243 1.19375 1.23692 0.95882 1.72070 1.06193 1.01475 1.25741 1.29957 1.04844 1.01205 0.96200 1.16571 0.80905 0.83099 0.82625 1.90851 1.41903 1.32600 1.75545 1.46219 1.51173 1.31989 1.04316 1.21956 0.96168 0.90913 0.91154 1.19356 0.98100 0.97945 0.87221 1.21011 1.32031 1.12234 0.90920 0.92147 1.25002 0.95315 0.95662 0.98296 1.69965 1.40393 1.30501 1.12206 0.86496 0.79945 0.81002 0.80009 1.20543 1.21149 1.19720 1.84810 1.43219 1.22696 1.03356 0.91083 0.92286 0.91106 0.88745 0.91101 0.92285 0.91091 0.75458 0.91776 0.91787 0.95647 0.95633 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.17 37.16 0.34 -0.58 16 2 C -0.01 -0.09 3.36 -91.77 -0.31 -0.40 16 3 C -0.14 -0.92 9.18 37.16 0.34 -0.58 16 4 C -0.01 -0.07 6.04 -13.11 -0.08 -0.15 16 5 N -0.26 -3.64 11.59 32.65 0.38 -3.26 16 6 N -0.21 -3.32 11.37 32.94 0.37 -2.94 16 7 C -0.04 -0.65 7.58 -14.32 -0.11 -0.76 16 8 C 0.59 10.55 7.81 -12.57 -0.10 10.46 16 9 O -0.53 -10.68 16.98 5.27 0.09 -10.59 16 10 N -0.69 -12.71 5.55 -61.42 -0.34 -13.05 16 11 C 0.12 2.52 5.61 -4.05 -0.02 2.50 16 12 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 13 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 17 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 S 0.21 2.44 23.12 -107.50 -2.49 -0.05 16 22 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.41 7.14 8.17 -40.82 -0.33 6.81 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 314.95 15.07 4.75 4.75 Total: -1.00 -31.36 314.95 -6.54 -37.90 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.52 Total: -1.10 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.49 Total: -2.53 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 1.15 Total: -44.68 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.49 Total: -0.05 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.36 -6.54 -37.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442559464.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.604 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds