Wall clock time and date at job start Mon Mar 30 2020 04:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 5 5 C 1.34777 * 120.00258 * 85.00009 * 4 2 1 6 6 O 1.21579 * 119.99978 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99908 * 179.97438 * 5 4 2 8 8 C 1.46494 * 119.99635 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47001 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47324 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99992 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00038 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00041 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00004 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47274 * 90.00144 * 14 12 10 16 16 H 1.48504 * 109.47383 * 209.99816 * 14 12 10 17 17 H 1.48502 * 109.47297 * 329.99779 * 14 12 10 18 18 C 1.50698 * 109.47254 * 119.99584 * 2 1 3 19 19 C 1.33638 * 122.75181 * 274.73721 * 18 2 1 20 20 S 1.76194 * 107.92499 * 179.97438 * 19 18 2 21 21 C 1.70981 * 90.28229 * 0.27516 * 20 19 18 22 22 N 1.29024 * 110.16478 * 359.83754 * 21 20 19 23 23 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 24 24 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 25 25 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 26 26 H 0.96999 * 119.99694 * 264.99399 * 4 2 1 27 27 H 0.96995 * 120.00015 * 359.72369 * 7 5 4 28 28 H 1.09005 * 109.47306 * 299.99972 * 8 7 5 29 29 H 1.09002 * 109.47518 * 60.00210 * 8 7 5 30 30 H 1.09005 * 109.46767 * 299.99934 * 9 8 7 31 31 H 1.08996 * 109.47766 * 59.99412 * 9 8 7 32 32 H 0.97001 * 120.00302 * 179.97438 * 13 12 10 33 33 H 1.07999 * 126.03742 * 0.03695 * 19 18 2 34 34 H 1.07996 * 124.91121 * 179.83947 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8575 1.1613 -2.4119 7 7 2.5968 -0.6535 -3.4575 8 6 2.7362 0.0772 -4.7195 9 6 3.2607 -0.8690 -5.8014 10 6 3.4047 -0.1172 -7.0995 11 1 3.1475 0.9305 -7.1482 12 6 3.8649 -0.7671 -8.2251 13 7 4.1787 -2.0428 -8.1658 14 14 4.0427 0.1646 -9.8343 15 1 5.4046 0.7507 -9.9192 16 1 3.8332 -0.7671 -10.9716 17 1 3.0318 1.2509 -9.8918 18 6 2.0324 -0.7103 1.2305 19 6 2.1859 -0.0965 2.4076 20 16 2.7880 -1.2824 3.5631 21 6 2.7813 -2.4838 2.3466 22 7 2.3623 -1.9861 1.2323 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 2.2491 -1.6317 -1.1525 27 1 2.8317 -1.5935 -3.4128 28 1 1.7653 0.4704 -5.0209 29 1 3.4368 0.9016 -4.5866 30 1 4.2316 -1.2626 -5.5003 31 1 2.5600 -1.6932 -5.9342 32 1 4.5021 -2.5001 -8.9577 33 1 1.9767 0.9427 2.6143 34 1 3.0838 -3.5105 2.4901 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595578614.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:53 Heat of formation + Delta-G solvation = 6.146167 kcal Electronic energy + Delta-G solvation = -17505.483479 eV Core-core repulsion = 14565.114272 eV Total energy + Delta-G solvation = -2940.369207 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.50641 -39.24757 -35.53472 -34.46492 -32.83809 -31.56513 -29.69472 -28.73821 -25.93141 -24.69122 -23.19396 -20.98931 -20.39752 -19.88452 -18.57962 -17.86007 -16.34282 -15.88080 -15.71700 -15.25249 -14.81225 -14.48655 -14.26764 -13.86090 -13.58381 -13.36586 -13.26136 -12.70771 -12.37003 -12.23948 -11.83607 -11.32933 -11.14127 -10.99898 -10.59680 -10.26953 -10.02723 -9.88129 -9.80466 -9.51112 -9.26257 -9.21118 -8.91524 -8.44232 -8.18251 -6.05372 -4.07841 0.38014 1.05011 1.36837 2.44350 3.13139 3.32321 3.38312 3.43110 3.65379 3.85054 4.43303 4.61195 4.77222 4.95125 5.04746 5.17758 5.26768 5.31649 5.51653 5.77182 5.83012 6.15563 6.36589 6.45728 6.66844 6.83509 7.07804 7.36495 7.38582 7.63058 7.68826 7.94249 8.30984 8.52785 8.97410 9.07350 9.56637 11.06353 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.043344 B = 0.002977 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.842522 B = 9404.442370 C = 9785.714462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.240 3.760 3 H 0.103 0.897 4 N -0.742 5.742 5 C 0.700 3.300 6 O -0.601 6.601 7 N -0.738 5.738 8 C 0.141 3.859 9 C 0.013 3.987 10 C -0.520 4.520 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.272 1.272 18 C 0.062 3.938 19 C -0.247 4.247 20 S 0.120 5.880 21 C 0.025 3.975 22 N -0.464 5.464 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.403 0.597 27 H 0.394 0.606 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.262 0.738 33 H 0.181 0.819 34 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.076 -1.250 25.187 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.131 3.869 3 H 0.121 0.879 4 N -0.399 5.399 5 C 0.400 3.600 6 O -0.481 6.481 7 N -0.391 5.391 8 C 0.018 3.982 9 C -0.025 4.025 10 C -0.559 4.559 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.070 4.070 19 C -0.387 4.387 20 S 0.372 5.628 21 C -0.273 4.273 22 N -0.178 5.178 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.238 0.762 27 H 0.227 0.773 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.198 0.802 34 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.022 -0.661 25.577 25.900 hybrid contribution 0.128 -0.208 -1.515 1.535 sum -3.894 -0.869 24.062 24.391 Atomic orbital electron populations 1.22198 0.94079 1.02541 1.02885 1.19144 0.93806 0.95348 0.78650 0.87941 1.45055 1.72428 1.14208 1.08256 1.16042 0.78538 0.85101 0.80339 1.90869 1.57910 1.14485 1.84788 1.45518 1.69643 1.14090 1.09864 1.21579 1.00355 0.95558 0.80717 1.19327 0.96586 0.94645 0.91939 1.21062 1.44144 0.96646 0.94008 0.92219 1.24998 0.95258 0.94913 0.99174 1.69959 1.44621 1.09183 1.29613 0.86512 0.78554 0.79637 0.82844 1.20590 1.21205 1.19717 1.20490 1.01175 0.89265 0.96076 1.26781 1.10758 1.05274 0.95865 1.84055 1.59942 1.02396 1.16387 1.28423 1.03081 1.04879 0.90919 1.65976 1.13367 1.11744 1.26668 0.91801 0.90801 0.92257 0.76160 0.77339 0.92782 0.92844 0.95995 0.95947 0.92891 0.80177 0.78198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.47 37.16 0.35 -1.42 16 2 C 0.24 2.97 2.91 -69.09 -0.20 2.77 16 3 H 0.10 1.36 7.57 -51.93 -0.39 0.97 16 4 N -0.74 -10.72 5.07 -59.82 -0.30 -11.03 16 5 C 0.70 12.91 8.53 -86.91 -0.74 12.17 16 6 O -0.60 -13.08 16.01 5.30 0.08 -13.00 16 7 N -0.74 -13.83 5.56 -65.23 -0.36 -14.19 16 8 C 0.14 3.13 5.61 -4.04 -0.02 3.11 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 11 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 14 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.06 0.67 5.80 -84.23 -0.49 0.18 16 19 C -0.25 -2.07 11.14 29.12 0.32 -1.75 16 20 S 0.12 0.79 23.22 -107.50 -2.50 -1.71 16 21 C 0.03 0.20 12.23 51.58 0.63 0.83 16 22 N -0.46 -4.96 9.52 -11.90 -0.11 -5.08 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.40 5.34 7.83 -40.82 -0.32 5.02 16 27 H 0.39 6.51 8.49 -40.82 -0.35 6.17 16 28 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.20 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 311.91 15.07 4.70 4.70 Total: -1.00 -33.28 311.91 -7.88 -41.16 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.41 Total: 5.68 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -0.70 Total: 2.60 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.04 Total: -56.08 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.50 Total: -1.71 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.28 -7.88 -41.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595578614.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.302 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds