Wall clock time and date at job start Mon Mar 30 2020 04:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 5 5 C 1.34777 * 120.00258 * 85.00009 * 4 2 1 6 6 O 1.21579 * 119.99978 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99908 * 179.97438 * 5 4 2 8 8 C 1.46494 * 119.99635 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47001 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47324 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99992 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00038 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00041 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00004 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47274 * 90.00144 * 14 12 10 16 16 H 1.48504 * 109.47383 * 209.99816 * 14 12 10 17 17 H 1.48502 * 109.47297 * 329.99779 * 14 12 10 18 18 C 1.50698 * 109.47254 * 119.99584 * 2 1 3 19 19 C 1.33638 * 122.75181 * 274.73721 * 18 2 1 20 20 S 1.76194 * 107.92499 * 179.97438 * 19 18 2 21 21 C 1.70981 * 90.28229 * 0.27516 * 20 19 18 22 22 N 1.29024 * 110.16478 * 359.83754 * 21 20 19 23 23 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 24 24 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 25 25 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 26 26 H 0.96999 * 119.99694 * 264.99399 * 4 2 1 27 27 H 0.96995 * 120.00015 * 359.72369 * 7 5 4 28 28 H 1.09005 * 109.47306 * 299.99972 * 8 7 5 29 29 H 1.09002 * 109.47518 * 60.00210 * 8 7 5 30 30 H 1.09005 * 109.46767 * 299.99934 * 9 8 7 31 31 H 1.08996 * 109.47766 * 59.99412 * 9 8 7 32 32 H 0.97001 * 120.00302 * 179.97438 * 13 12 10 33 33 H 1.07999 * 126.03742 * 0.03695 * 19 18 2 34 34 H 1.07996 * 124.91121 * 179.83947 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8575 1.1613 -2.4119 7 7 2.5968 -0.6535 -3.4575 8 6 2.7362 0.0772 -4.7195 9 6 3.2607 -0.8690 -5.8014 10 6 3.4047 -0.1172 -7.0995 11 1 3.1475 0.9305 -7.1482 12 6 3.8649 -0.7671 -8.2251 13 7 4.1787 -2.0428 -8.1658 14 14 4.0427 0.1646 -9.8343 15 1 5.4046 0.7507 -9.9192 16 1 3.8332 -0.7671 -10.9716 17 1 3.0318 1.2509 -9.8918 18 6 2.0324 -0.7103 1.2305 19 6 2.1859 -0.0965 2.4076 20 16 2.7880 -1.2824 3.5631 21 6 2.7813 -2.4838 2.3466 22 7 2.3623 -1.9861 1.2323 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 2.2491 -1.6317 -1.1525 27 1 2.8317 -1.5935 -3.4128 28 1 1.7653 0.4704 -5.0209 29 1 3.4368 0.9016 -4.5866 30 1 4.2316 -1.2626 -5.5003 31 1 2.5600 -1.6932 -5.9342 32 1 4.5021 -2.5001 -8.9577 33 1 1.9767 0.9427 2.6143 34 1 3.0838 -3.5105 2.4901 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595578614.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:53 Heat of formation + Delta-G solvation = -18.198375 kcal Electronic energy + Delta-G solvation = -17506.539137 eV Core-core repulsion = 14565.114272 eV Total energy + Delta-G solvation = -2941.424866 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.45330 -40.48317 -36.93921 -36.02141 -34.82426 -32.76394 -31.17631 -29.89732 -26.91147 -26.34619 -24.24200 -22.86014 -21.85590 -20.66287 -19.57197 -19.01202 -18.42410 -16.98393 -16.66030 -16.64894 -16.42314 -15.77997 -15.56779 -15.19793 -14.97511 -14.48768 -14.28119 -14.13864 -13.79740 -13.23383 -13.20232 -12.93344 -12.67875 -12.51212 -12.23672 -12.18321 -11.66952 -11.49582 -11.19477 -10.65456 -10.60031 -10.44557 -10.35511 -9.86131 -9.67014 -8.23215 -6.33756 -0.22102 0.48546 0.76288 1.42320 1.43306 1.54653 1.66510 1.87362 2.17216 2.42192 3.11461 3.13400 3.42310 3.89671 4.21897 4.24598 4.43773 4.48344 4.49425 4.53311 4.67981 4.85782 4.87865 5.05078 5.22336 5.32521 5.49801 5.53246 5.59840 5.79548 6.05336 6.17788 6.73817 6.79521 7.11935 7.35526 7.59322 8.88897 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.043344 B = 0.002977 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.842522 B = 9404.442370 C = 9785.714462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.236 3.764 3 H 0.091 0.909 4 N -0.726 5.726 5 C 0.700 3.300 6 O -0.635 6.635 7 N -0.735 5.735 8 C 0.161 3.839 9 C 0.024 3.976 10 C -0.546 4.546 11 H 0.060 0.940 12 C 0.006 3.994 13 N -0.927 5.927 14 Si 0.967 3.033 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.266 1.266 18 C 0.040 3.960 19 C -0.252 4.252 20 S 0.178 5.822 21 C 0.017 3.983 22 N -0.498 5.498 23 H 0.089 0.911 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.411 0.589 27 H 0.405 0.595 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.007 0.993 31 H 0.008 0.992 32 H 0.266 0.734 33 H 0.198 0.802 34 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.951 -1.243 26.594 26.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.128 3.872 3 H 0.109 0.891 4 N -0.383 5.383 5 C 0.400 3.600 6 O -0.517 6.517 7 N -0.389 5.389 8 C 0.037 3.963 9 C -0.014 4.014 10 C -0.585 4.585 11 H 0.078 0.922 12 C -0.193 4.193 13 N -0.567 5.567 14 Si 0.791 3.209 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.190 1.190 18 C -0.092 4.092 19 C -0.392 4.392 20 S 0.431 5.569 21 C -0.280 4.280 22 N -0.213 5.213 23 H 0.107 0.893 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.247 0.753 27 H 0.240 0.760 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.025 0.975 31 H 0.026 0.974 32 H 0.075 0.925 33 H 0.215 0.785 34 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -3.899 -0.691 27.044 27.333 hybrid contribution 0.108 -0.258 -1.787 1.808 sum -3.791 -0.949 25.258 25.558 Atomic orbital electron populations 1.22113 0.93293 1.02512 1.02940 1.19243 0.94478 0.94906 0.78614 0.89128 1.44975 1.71212 1.14426 1.07642 1.16108 0.78213 0.84712 0.80981 1.90841 1.59392 1.16082 1.85434 1.45245 1.70056 1.14485 1.09124 1.21080 0.99260 0.94599 0.81345 1.19128 0.95433 0.94477 0.92329 1.21470 1.44528 0.97032 0.95436 0.92182 1.25893 0.94664 0.95818 1.02890 1.70066 1.45142 1.10657 1.30844 0.85419 0.78853 0.78413 0.78205 1.19729 1.20491 1.18990 1.20207 1.03339 0.89815 0.95876 1.27090 1.09578 1.06639 0.95883 1.83889 1.58179 1.00432 1.14378 1.28920 1.02008 1.06421 0.90693 1.65936 1.14960 1.11950 1.28434 0.89258 0.93156 0.92237 0.75283 0.76024 0.93686 0.93765 0.97460 0.97388 0.92544 0.78474 0.75571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.47 71.98 0.68 -2.62 16 2 C 0.24 5.79 2.91 44.25 0.13 5.92 16 3 H 0.09 2.43 7.57 -2.39 -0.02 2.41 16 4 N -0.73 -20.99 5.07 -461.42 -2.34 -23.33 16 5 C 0.70 26.13 8.53 179.05 1.53 27.66 16 6 O -0.64 -28.17 16.01 -3.96 -0.06 -28.24 16 7 N -0.73 -27.92 5.56 -478.53 -2.66 -30.58 16 8 C 0.16 7.32 5.61 86.38 0.48 7.81 16 9 C 0.02 1.25 5.09 29.85 0.15 1.40 16 10 C -0.55 -31.20 9.11 25.60 0.23 -30.97 16 11 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 12 C 0.01 0.34 5.46 84.65 0.46 0.80 16 13 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 14 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 C 0.04 0.81 5.80 41.52 0.24 1.05 16 19 C -0.25 -3.71 11.14 66.78 0.74 -2.97 16 20 S 0.18 1.85 23.22 -56.49 -1.31 0.53 16 21 C 0.02 0.22 12.23 130.65 1.60 1.82 16 22 N -0.50 -9.98 9.52 -191.56 -1.82 -11.80 16 23 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.41 10.76 7.83 -92.71 -0.73 10.04 16 27 H 0.40 13.51 8.49 -92.71 -0.79 12.73 16 28 H 0.04 2.12 8.14 -2.38 -0.02 2.10 16 29 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.01 0.42 8.14 -2.39 -0.02 0.41 16 32 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 33 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.23 1.43 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -71.38 311.91 -0.02 -71.40 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -0.39 Total: 20.84 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 6.25 Total: 9.89 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -6.54 Total: -120.72 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.06 Total: -28.24 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -1.31 Total: 0.53 kcal Total: -71.38 -0.02 -71.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595578614.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.202 kcal (2) G-P(sol) polarization free energy of solvation -71.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds