Wall clock time and date at job start Mon Mar 30 2020 04:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 113.99911 * 2 1 4 4 H 1.08997 * 109.47575 * 330.00121 * 3 2 1 5 5 C 1.53005 * 109.47126 * 90.00267 * 3 2 1 6 6 C 1.50697 * 109.47287 * 209.99798 * 3 2 1 7 7 N 1.30129 * 121.06859 * 315.03110 * 6 3 2 8 8 S 1.69946 * 105.76930 * 179.97438 * 7 6 3 9 9 C 1.72304 * 94.57262 * 359.97438 * 8 7 6 10 10 N 1.38310 * 127.49878 * 180.26961 * 9 8 7 11 11 C 1.47485 * 110.99645 * 263.70073 * 10 9 8 12 12 C 1.53508 * 87.93201 * 138.70534 * 11 10 9 13 13 C 1.50704 * 114.17309 * 220.32638 * 12 11 10 14 14 H 1.08001 * 119.99240 * 93.84172 * 13 12 11 15 15 C 1.37870 * 120.00256 * 273.84539 * 13 12 11 16 16 N 1.31517 * 120.00040 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00201 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46867 * 59.99611 * 17 15 13 19 19 H 1.48496 * 109.47518 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46898 * 299.99872 * 17 15 13 21 21 C 1.47481 * 111.00421 * 359.66912 * 10 9 8 22 22 N 1.31289 * 121.06097 * 134.99771 * 6 3 2 23 23 H 1.09007 * 109.47340 * 299.99714 * 1 2 3 24 24 H 1.08996 * 109.47675 * 60.00073 * 1 2 3 25 25 H 1.09002 * 109.47195 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47054 * 300.00186 * 5 3 2 27 27 H 1.09001 * 109.46760 * 59.99942 * 5 3 2 28 28 H 1.08995 * 109.47402 * 179.97438 * 5 3 2 29 29 H 1.09002 * 113.47392 * 253.47155 * 11 10 9 30 30 H 1.09001 * 113.47715 * 23.93998 * 11 10 9 31 31 H 1.09009 * 114.16856 * 87.62232 * 12 11 10 32 32 H 0.97001 * 120.00411 * 180.02562 * 16 15 13 33 33 H 1.09002 * 113.47544 * 336.07053 * 21 10 9 34 34 H 1.09003 * 113.47374 * 106.47386 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3385 1.2639 -0.7103 7 7 4.1959 0.3135 -0.4761 8 16 5.5338 0.6428 -1.4709 9 6 4.8476 2.0666 -2.1570 10 7 5.4118 2.9004 -3.1055 11 6 6.0676 4.0577 -2.4687 12 6 7.2156 3.8897 -3.4738 13 6 8.5873 4.0943 -2.8839 14 1 9.1515 3.2471 -2.5228 15 6 9.1217 5.3627 -2.8052 16 7 8.4347 6.3942 -3.2454 17 14 10.8215 5.6164 -2.0734 18 1 11.8202 4.8548 -2.8658 19 1 11.1633 7.0611 -2.1044 20 1 10.8326 5.1347 -0.6687 21 6 6.7527 2.4262 -3.4956 22 7 3.6676 2.1853 -1.5858 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.2569 1.8014 1.9564 27 1 2.8829 1.0774 1.9563 28 1 2.6613 2.7669 1.4426 29 1 5.5167 4.9903 -2.5906 30 1 6.3644 3.8746 -1.4359 31 1 7.0660 4.4192 -4.4148 32 1 8.8108 7.2866 -3.1904 33 1 7.2322 1.8077 -2.7370 34 1 6.7821 1.9752 -4.4875 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596431232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:13 Heat of formation + Delta-G solvation = 50.805435 kcal Electronic energy + Delta-G solvation = -18069.860110 eV Core-core repulsion = 15131.427474 eV Total energy + Delta-G solvation = -2938.432636 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.51157 -39.43706 -37.84903 -33.22624 -32.26104 -31.03124 -28.96016 -26.97571 -25.71296 -25.44655 -24.27342 -21.71580 -19.72809 -19.33922 -18.52725 -17.24421 -16.49416 -15.93590 -15.80317 -15.43817 -14.94161 -14.54653 -14.40155 -13.52156 -13.49041 -12.88795 -12.58113 -12.37236 -12.24004 -11.96215 -11.72617 -11.56782 -11.14989 -11.07478 -10.93499 -10.72293 -10.28728 -10.15913 -9.92651 -9.78848 -9.40421 -9.35810 -9.03215 -8.66763 -8.35056 -6.25542 -4.32530 0.66957 1.34335 1.88871 2.63333 3.19685 3.21610 3.27375 3.29706 3.96326 4.27269 4.59907 4.88901 4.95334 5.01533 5.12724 5.21149 5.34371 5.45236 5.49219 5.55693 5.61990 5.82961 5.87945 5.96101 6.03350 6.18267 6.25862 6.47989 6.72681 6.94430 7.28470 7.44804 7.71048 7.86967 8.05678 8.71031 9.34672 10.83679 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.035947 B = 0.004230 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.747578 B = 6617.833209 C = 6684.591067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.372 6.372 3 C 0.178 3.822 4 H 0.091 0.909 5 C -0.167 4.167 6 C 0.274 3.726 7 N -0.465 5.465 8 S 0.176 5.824 9 C 0.269 3.731 10 N -0.397 5.397 11 C 0.024 3.976 12 C 0.053 3.947 13 C -0.524 4.524 14 H 0.064 0.936 15 C 0.071 3.929 16 N -0.881 5.881 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.008 4.008 22 N -0.531 5.531 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.266 0.734 33 H 0.076 0.924 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.732 -7.976 5.214 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C 0.115 3.885 4 H 0.109 0.891 5 C -0.225 4.225 6 C -0.018 4.018 7 N -0.296 5.296 8 S 0.315 5.685 9 C -0.108 4.108 10 N -0.119 5.119 11 C -0.103 4.103 12 C 0.034 3.966 13 C -0.562 4.562 14 H 0.082 0.918 15 C -0.133 4.133 16 N -0.517 5.517 17 Si 0.723 3.277 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.137 4.137 22 N -0.258 5.258 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.681 -8.897 5.197 14.841 hybrid contribution 0.385 0.933 0.756 1.261 sum -10.297 -7.965 5.953 14.314 Atomic orbital electron populations 1.22850 0.80628 1.02998 1.00190 1.88016 1.19719 1.26236 1.94985 1.20273 0.87533 0.85810 0.94868 0.89114 1.22232 1.03065 1.02379 0.94830 1.22954 0.97652 0.87399 0.93762 1.77475 1.03003 1.26348 1.22755 1.85121 1.24605 1.25974 1.32800 1.28327 0.92308 0.97330 0.92857 1.65577 1.18993 1.06024 1.21281 1.24541 0.95546 0.90582 0.99660 1.20172 0.93098 0.87413 0.95924 1.20896 1.00278 0.93382 1.41652 0.91766 1.25025 0.97737 0.95988 0.94590 1.69937 1.37739 0.99214 1.44796 0.86584 0.83981 0.77269 0.79845 1.19877 1.21092 1.20010 1.24599 0.84573 1.03056 1.01433 1.67269 1.15890 1.28694 1.13898 0.93762 0.93740 0.89344 0.91226 0.91013 0.90941 0.89631 0.91290 0.90384 0.92380 0.90622 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.37 16 2 O -0.37 -5.16 10.23 -35.23 -0.36 -5.52 16 3 C 0.18 2.49 3.19 -27.88 -0.09 2.40 16 4 H 0.09 1.14 7.79 -51.93 -0.40 0.73 16 5 C -0.17 -1.95 9.51 37.16 0.35 -1.60 16 6 C 0.27 4.85 6.52 -159.04 -1.04 3.81 16 7 N -0.46 -8.58 12.02 29.54 0.36 -8.22 16 8 S 0.18 3.13 21.61 -107.50 -2.32 0.80 16 9 C 0.27 5.22 6.88 -86.36 -0.59 4.63 16 10 N -0.40 -7.94 6.51 -184.03 -1.20 -9.14 16 11 C 0.02 0.52 7.23 -7.55 -0.05 0.47 16 12 C 0.05 1.21 3.77 -91.24 -0.34 0.86 16 13 C -0.52 -13.00 8.82 -34.44 -0.30 -13.31 16 14 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 15 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 16 N -0.88 -23.57 13.26 55.43 0.74 -22.84 16 17 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 C -0.01 -0.15 6.94 -7.55 -0.05 -0.20 16 22 N -0.53 -10.21 10.61 -14.57 -0.15 -10.37 16 23 H 0.04 0.33 7.87 -51.92 -0.41 -0.08 16 24 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 30 H 0.07 1.50 7.85 -51.93 -0.41 1.10 16 31 H 0.08 1.90 8.11 -51.92 -0.42 1.47 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.08 1.41 6.27 -51.93 -0.33 1.08 16 34 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 304.91 15.07 4.59 4.59 Total: -1.00 -28.09 304.91 -8.95 -37.05 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.45 Total: -1.25 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.13 Total: 0.15 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.26 Total: -50.56 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.36 Total: -5.52 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -2.32 Total: 0.80 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.09 -8.95 -37.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596431232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.851 kcal (2) G-P(sol) polarization free energy of solvation -28.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds