Wall clock time and date at job start Mon Mar 30 2020 04:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 113.99911 * 2 1 4 4 H 1.08997 * 109.47575 * 330.00121 * 3 2 1 5 5 C 1.53005 * 109.47126 * 90.00267 * 3 2 1 6 6 C 1.50697 * 109.47287 * 209.99798 * 3 2 1 7 7 N 1.30129 * 121.06859 * 315.03110 * 6 3 2 8 8 S 1.69946 * 105.76930 * 179.97438 * 7 6 3 9 9 C 1.72304 * 94.57262 * 359.97438 * 8 7 6 10 10 N 1.38310 * 127.49878 * 180.26961 * 9 8 7 11 11 C 1.47485 * 110.99645 * 263.70073 * 10 9 8 12 12 C 1.53508 * 87.93201 * 138.70534 * 11 10 9 13 13 C 1.50704 * 114.17309 * 220.32638 * 12 11 10 14 14 H 1.08001 * 119.99240 * 93.84172 * 13 12 11 15 15 C 1.37870 * 120.00256 * 273.84539 * 13 12 11 16 16 N 1.31517 * 120.00040 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00201 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46867 * 59.99611 * 17 15 13 19 19 H 1.48496 * 109.47518 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46898 * 299.99872 * 17 15 13 21 21 C 1.47481 * 111.00421 * 359.66912 * 10 9 8 22 22 N 1.31289 * 121.06097 * 134.99771 * 6 3 2 23 23 H 1.09007 * 109.47340 * 299.99714 * 1 2 3 24 24 H 1.08996 * 109.47675 * 60.00073 * 1 2 3 25 25 H 1.09002 * 109.47195 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47054 * 300.00186 * 5 3 2 27 27 H 1.09001 * 109.46760 * 59.99942 * 5 3 2 28 28 H 1.08995 * 109.47402 * 179.97438 * 5 3 2 29 29 H 1.09002 * 113.47392 * 253.47155 * 11 10 9 30 30 H 1.09001 * 113.47715 * 23.93998 * 11 10 9 31 31 H 1.09009 * 114.16856 * 87.62232 * 12 11 10 32 32 H 0.97001 * 120.00411 * 180.02562 * 16 15 13 33 33 H 1.09002 * 113.47544 * 336.07053 * 21 10 9 34 34 H 1.09003 * 113.47374 * 106.47386 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3385 1.2639 -0.7103 7 7 4.1959 0.3135 -0.4761 8 16 5.5338 0.6428 -1.4709 9 6 4.8476 2.0666 -2.1570 10 7 5.4118 2.9004 -3.1055 11 6 6.0676 4.0577 -2.4687 12 6 7.2156 3.8897 -3.4738 13 6 8.5873 4.0943 -2.8839 14 1 9.1515 3.2471 -2.5228 15 6 9.1217 5.3627 -2.8052 16 7 8.4347 6.3942 -3.2454 17 14 10.8215 5.6164 -2.0734 18 1 11.8202 4.8548 -2.8658 19 1 11.1633 7.0611 -2.1044 20 1 10.8326 5.1347 -0.6687 21 6 6.7527 2.4262 -3.4956 22 7 3.6676 2.1853 -1.5858 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.2569 1.8014 1.9564 27 1 2.8829 1.0774 1.9563 28 1 2.6613 2.7669 1.4426 29 1 5.5167 4.9903 -2.5906 30 1 6.3644 3.8746 -1.4359 31 1 7.0660 4.4192 -4.4148 32 1 8.8108 7.2866 -3.1904 33 1 7.2322 1.8077 -2.7370 34 1 6.7821 1.9752 -4.4875 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596431232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:13 Heat of formation + Delta-G solvation = 31.789047 kcal Electronic energy + Delta-G solvation = -18070.684723 eV Core-core repulsion = 15131.427474 eV Total energy + Delta-G solvation = -2939.257249 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.99690 -40.91463 -38.90506 -34.99689 -33.71240 -32.18876 -30.63799 -27.77864 -27.30214 -27.06875 -25.71133 -23.05087 -21.24319 -20.86948 -19.99015 -18.93031 -17.76962 -17.27937 -16.99214 -16.75247 -16.33772 -16.28232 -15.82780 -15.02655 -14.49994 -14.18459 -13.90819 -13.69512 -13.51156 -13.36019 -13.13474 -12.89421 -12.75427 -12.53559 -12.42842 -12.01968 -11.95087 -11.73309 -11.45032 -11.13884 -10.94563 -10.84701 -10.58576 -10.49585 -9.89658 -8.18846 -6.30896 -0.80754 -0.12005 0.48562 1.25599 1.48120 1.48871 1.56129 1.93518 2.43312 2.78582 3.10364 3.35275 3.77260 3.91926 3.94362 3.99301 4.20508 4.25682 4.43655 4.46519 4.53812 4.55447 4.65308 4.70927 4.78229 4.82433 4.85101 4.97250 5.11832 5.52814 5.67757 5.81560 6.04646 6.17177 6.44181 6.78292 7.39313 8.90520 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.035947 B = 0.004230 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.747578 B = 6617.833209 C = 6684.591067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.397 6.397 3 C 0.176 3.824 4 H 0.104 0.896 5 C -0.160 4.160 6 C 0.270 3.730 7 N -0.479 5.479 8 S 0.206 5.794 9 C 0.249 3.751 10 N -0.400 5.400 11 C 0.035 3.965 12 C 0.041 3.959 13 C -0.534 4.534 14 H 0.069 0.931 15 C 0.024 3.976 16 N -0.915 5.915 17 Si 0.955 3.045 18 H -0.267 1.267 19 H -0.287 1.287 20 H -0.271 1.271 21 C 0.006 3.994 22 N -0.542 5.542 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.266 0.734 33 H 0.084 0.916 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.233 -9.058 6.154 15.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.113 3.887 4 H 0.121 0.879 5 C -0.218 4.218 6 C -0.022 4.022 7 N -0.310 5.310 8 S 0.345 5.655 9 C -0.128 4.128 10 N -0.121 5.121 11 C -0.094 4.094 12 C 0.021 3.979 13 C -0.572 4.572 14 H 0.087 0.913 15 C -0.177 4.177 16 N -0.552 5.552 17 Si 0.781 3.219 18 H -0.191 1.191 19 H -0.213 1.213 20 H -0.196 1.196 21 C -0.122 4.122 22 N -0.269 5.269 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.193 -10.007 6.138 16.220 hybrid contribution 0.442 1.176 0.483 1.346 sum -10.751 -8.831 6.621 15.409 Atomic orbital electron populations 1.23112 0.78276 1.04408 1.01533 1.87974 1.22280 1.26097 1.95174 1.20481 0.86033 0.86452 0.95713 0.87851 1.22201 1.04504 1.01595 0.93519 1.23630 0.98895 0.86483 0.93171 1.77475 1.03420 1.26904 1.23246 1.84931 1.24091 1.24383 1.32057 1.28292 0.92916 0.98235 0.93363 1.65506 1.19299 1.05729 1.21613 1.24236 0.95191 0.90933 0.99021 1.20048 0.92781 0.89903 0.95119 1.21244 1.01243 0.93525 1.41138 0.91293 1.25756 1.01009 0.95887 0.95094 1.70049 1.39298 0.99506 1.46394 0.85647 0.80126 0.76972 0.79201 1.19142 1.21268 1.19591 1.24485 0.83843 1.00990 1.02927 1.67321 1.16018 1.29455 1.14133 0.91645 0.93142 0.87985 0.88119 0.92285 0.91233 0.90902 0.91842 0.92659 0.92539 0.89796 0.87224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.58 16 2 O -0.40 -10.23 10.23 -148.98 -1.52 -11.76 16 3 C 0.18 4.60 3.19 29.85 0.10 4.70 16 4 H 0.10 2.39 7.79 -2.39 -0.02 2.37 16 5 C -0.16 -3.42 9.51 71.98 0.68 -2.74 16 6 C 0.27 9.21 6.52 139.39 0.91 10.12 16 7 N -0.48 -17.11 12.02 -60.44 -0.73 -17.83 16 8 S 0.21 7.05 21.61 -56.49 -1.22 5.83 16 9 C 0.25 9.46 6.88 178.86 1.23 10.70 16 10 N -0.40 -15.82 6.51 -736.14 -4.79 -20.61 16 11 C 0.03 1.50 7.23 83.57 0.60 2.10 16 12 C 0.04 1.87 3.77 -11.20 -0.04 1.83 16 13 C -0.53 -26.41 8.82 25.60 0.23 -26.18 16 14 H 0.07 3.27 7.81 -2.91 -0.02 3.25 16 15 C 0.02 1.21 5.46 84.65 0.46 1.67 16 16 N -0.92 -49.71 13.26 21.44 0.28 -49.42 16 17 Si 0.96 40.30 29.54 68.60 2.03 42.32 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 C 0.01 0.22 6.94 83.57 0.58 0.80 16 22 N -0.54 -20.40 10.61 -200.02 -2.12 -22.52 16 23 H 0.06 0.75 7.87 -2.38 -0.02 0.73 16 24 H 0.05 0.73 8.08 -2.39 -0.02 0.71 16 25 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.10 1.50 7.87 -2.39 -0.02 1.48 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 30 H 0.06 2.79 7.85 -2.39 -0.02 2.77 16 31 H 0.06 2.76 8.11 -2.38 -0.02 2.74 16 32 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 33 H 0.08 2.99 6.27 -2.39 -0.01 2.98 16 34 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 Total: -1.00 -59.30 304.91 -1.00 -60.29 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.10 Total: 9.12 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 5.98 Total: 4.58 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -7.36 Total: -110.39 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -1.52 Total: -11.76 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 16 Polarization: 7.05 SS G_CDS: -1.22 Total: 5.83 kcal Total: -59.30 -1.00 -60.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596431232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.084 kcal (2) G-P(sol) polarization free energy of solvation -59.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds