Wall clock time and date at job start Mon Mar 30 2020 04:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47075 * 2 1 4 4 C 1.50697 * 109.47208 * 180.02562 * 3 2 1 5 5 N 1.29517 * 126.14618 * 90.02324 * 4 3 2 6 6 N 1.26249 * 116.58045 * 179.97438 * 5 4 3 7 7 C 1.29894 * 117.65972 * 359.97438 * 6 5 4 8 8 N 1.39080 * 125.65137 * 179.73346 * 7 6 5 9 9 C 1.34775 * 119.99879 * 0.03465 * 8 7 6 10 10 O 1.21280 * 120.00296 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 H 1.08998 * 109.47279 * 299.99126 * 11 9 8 13 13 C 1.52998 * 109.47166 * 59.99946 * 11 9 8 14 14 C 1.50704 * 109.46654 * 179.97438 * 11 9 8 15 15 H 1.07996 * 120.00718 * 0.02562 * 14 11 9 16 16 C 1.37884 * 119.99717 * 180.02562 * 14 11 9 17 17 N 1.31511 * 119.99802 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 120.00027 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47640 * 89.99800 * 18 16 14 20 20 H 1.48505 * 109.47140 * 210.00203 * 18 16 14 21 21 H 1.48504 * 109.46968 * 329.99783 * 18 16 14 22 22 S 1.71305 * 108.69513 * 0.02562 * 7 6 5 23 23 H 1.09006 * 109.46645 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47064 * 299.99614 * 1 2 3 25 25 H 1.09001 * 109.47338 * 60.00125 * 1 2 3 26 26 H 1.09001 * 109.46971 * 239.99904 * 2 1 3 27 27 H 1.09001 * 109.47338 * 119.99875 * 2 1 3 28 28 H 1.09001 * 109.47300 * 60.00106 * 3 2 1 29 29 H 1.09001 * 109.46936 * 300.00121 * 3 2 1 30 30 H 0.96993 * 119.99547 * 180.02562 * 8 7 6 31 31 H 1.09004 * 109.47265 * 59.99994 * 13 11 9 32 32 H 1.08997 * 109.47095 * 179.97438 * 13 11 9 33 33 H 1.09005 * 109.47155 * 299.99647 * 13 11 9 34 34 H 0.97009 * 119.99813 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3105 1.4431 -1.0468 6 7 5.5555 1.4435 -0.8376 7 6 5.9595 1.4438 0.3970 8 7 7.2856 1.4391 0.8160 9 6 8.2798 1.4342 -0.0940 10 8 8.0180 1.4336 -1.2782 11 6 9.7168 1.4296 0.3601 12 1 9.9117 2.3198 0.9582 13 6 9.9812 0.1806 1.2032 14 6 10.6238 1.4241 -0.8435 15 1 10.2020 1.4243 -1.8376 16 6 11.9923 1.4187 -0.6753 17 7 12.5060 1.4179 0.5353 18 14 13.1166 1.4125 -2.1670 19 1 13.4202 2.8109 -2.5639 20 1 14.3800 0.7077 -1.8317 21 1 12.4434 0.7140 -3.2913 22 16 4.5880 1.4428 1.4235 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 7.4949 1.4393 1.7630 31 1 9.7864 -0.7096 0.6049 32 1 11.0207 0.1770 1.5312 33 1 9.3252 0.1842 2.0737 34 1 13.4688 1.4137 0.6537 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596887098.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:23 Heat of formation + Delta-G solvation = 16.372954 kcal Electronic energy + Delta-G solvation = -17744.299051 eV Core-core repulsion = 14804.373311 eV Total energy + Delta-G solvation = -2939.925741 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.05427 -39.12647 -35.71791 -34.53809 -33.91888 -31.07641 -30.27133 -27.66239 -25.31315 -25.16782 -23.19850 -21.96581 -20.86064 -19.70477 -18.32206 -17.36260 -16.24099 -15.86853 -15.71440 -15.27493 -14.58213 -14.49197 -14.24583 -13.54290 -13.27924 -13.20723 -12.71337 -12.47771 -12.06684 -11.80883 -11.59974 -11.11486 -11.06286 -10.98543 -10.81939 -10.75512 -10.40735 -10.34638 -10.06486 -9.93849 -9.51956 -9.12499 -8.82281 -8.45901 -8.41217 -6.13713 -4.17803 0.63332 0.70903 1.30933 2.77380 3.17340 3.30406 3.36247 3.45015 3.54537 4.19466 4.39930 4.66585 4.72705 4.94100 4.97913 5.20337 5.27945 5.41104 5.49194 5.57677 5.78278 5.85606 5.90217 6.00190 6.37482 6.45906 6.63846 6.73206 7.24683 7.47086 7.68482 7.92863 8.14330 8.75169 8.91778 8.95211 9.48581 10.93908 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.047968 B = 0.003757 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.580291 B = 7450.563665 C = 7796.326822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.030 4.030 4 C -0.010 4.010 5 N -0.223 5.223 6 N -0.281 5.281 7 C 0.254 3.746 8 N -0.634 5.634 9 C 0.508 3.492 10 O -0.467 6.467 11 C 0.039 3.961 12 H 0.060 0.940 13 C -0.137 4.137 14 C -0.507 4.507 15 H 0.077 0.923 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.271 1.271 22 S 0.069 5.931 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.421 0.579 31 H 0.035 0.965 32 H 0.099 0.901 33 H 0.013 0.987 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.257 -1.109 7.168 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.072 4.072 4 C -0.293 4.293 5 N -0.059 5.059 6 N -0.126 5.126 7 C -0.116 4.116 8 N -0.288 5.288 9 C 0.295 3.705 10 O -0.332 6.332 11 C 0.018 3.982 12 H 0.078 0.922 13 C -0.195 4.195 14 C -0.545 4.545 15 H 0.095 0.905 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.196 1.196 22 S 0.308 5.692 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.116 0.884 30 H 0.259 0.741 31 H 0.054 0.946 32 H 0.118 0.882 33 H 0.032 0.968 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.969 -1.104 6.013 19.930 hybrid contribution 0.875 0.019 -0.090 0.879 sum -18.095 -1.085 5.923 19.070 Atomic orbital electron populations 1.21759 0.94959 1.02051 1.02042 1.21562 0.96153 0.95186 1.03118 1.20159 0.83834 0.98805 1.04392 1.29729 1.02114 1.08925 0.88521 1.71398 0.96519 1.11829 1.26125 1.71571 1.05315 1.21181 1.14493 1.26314 0.92941 0.99985 0.92341 1.44125 0.99809 1.72500 1.12323 1.22814 0.88025 0.73746 0.85891 1.90695 1.83331 1.42554 1.16645 1.18961 0.83464 0.97397 0.98413 0.92232 1.21817 1.04273 0.97146 0.96247 1.21117 0.90137 1.50781 0.92479 0.90515 1.24934 0.98027 0.94702 0.96349 1.69854 1.12245 1.50696 1.20634 0.86387 0.79538 0.78274 0.82700 1.20529 1.21181 1.19592 1.84578 0.99187 1.72858 1.12539 0.92369 0.92544 0.92357 0.91075 0.91613 0.89527 0.88435 0.74105 0.94582 0.88245 0.96845 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 3 C -0.03 -0.27 5.84 -27.89 -0.16 -0.43 16 4 C -0.01 -0.13 7.05 -13.26 -0.09 -0.22 16 5 N -0.22 -4.02 11.65 33.58 0.39 -3.63 16 6 N -0.28 -5.87 9.74 29.97 0.29 -5.58 16 7 C 0.25 4.52 8.14 -87.05 -0.71 3.82 16 8 N -0.63 -11.34 5.30 -12.91 -0.07 -11.41 16 9 C 0.51 11.59 7.11 -10.99 -0.08 11.51 16 10 O -0.47 -12.54 14.14 5.56 0.08 -12.46 16 11 C 0.04 0.94 2.64 -92.92 -0.25 0.70 16 12 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 13 C -0.14 -2.98 8.86 37.16 0.33 -2.65 16 14 C -0.51 -14.09 8.37 -34.44 -0.29 -14.37 16 15 H 0.08 2.27 6.75 -52.49 -0.35 1.92 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 17 N -0.90 -24.39 11.32 55.43 0.63 -23.76 16 18 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 S 0.07 0.86 23.31 -107.50 -2.51 -1.64 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.42 5.84 8.24 -40.82 -0.34 5.51 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 2.39 6.07 -51.93 -0.31 2.07 16 33 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 34 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 305.68 15.07 4.61 4.61 Total: -1.00 -32.86 305.68 -7.07 -39.93 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -4.34 Total: -0.87 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.13 Total: -1.76 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 1.24 Total: -44.37 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.86 -7.07 -39.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596887098.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.306 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds