Wall clock time and date at job start Mon Mar 30 2020 04:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47075 * 2 1 4 4 C 1.50697 * 109.47208 * 180.02562 * 3 2 1 5 5 N 1.29517 * 126.14618 * 90.02324 * 4 3 2 6 6 N 1.26249 * 116.58045 * 179.97438 * 5 4 3 7 7 C 1.29894 * 117.65972 * 359.97438 * 6 5 4 8 8 N 1.39080 * 125.65137 * 179.73346 * 7 6 5 9 9 C 1.34775 * 119.99879 * 0.03465 * 8 7 6 10 10 O 1.21280 * 120.00296 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 H 1.08998 * 109.47279 * 299.99126 * 11 9 8 13 13 C 1.52998 * 109.47166 * 59.99946 * 11 9 8 14 14 C 1.50704 * 109.46654 * 179.97438 * 11 9 8 15 15 H 1.07996 * 120.00718 * 0.02562 * 14 11 9 16 16 C 1.37884 * 119.99717 * 180.02562 * 14 11 9 17 17 N 1.31511 * 119.99802 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 120.00027 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47640 * 89.99800 * 18 16 14 20 20 H 1.48505 * 109.47140 * 210.00203 * 18 16 14 21 21 H 1.48504 * 109.46968 * 329.99783 * 18 16 14 22 22 S 1.71305 * 108.69513 * 0.02562 * 7 6 5 23 23 H 1.09006 * 109.46645 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47064 * 299.99614 * 1 2 3 25 25 H 1.09001 * 109.47338 * 60.00125 * 1 2 3 26 26 H 1.09001 * 109.46971 * 239.99904 * 2 1 3 27 27 H 1.09001 * 109.47338 * 119.99875 * 2 1 3 28 28 H 1.09001 * 109.47300 * 60.00106 * 3 2 1 29 29 H 1.09001 * 109.46936 * 300.00121 * 3 2 1 30 30 H 0.96993 * 119.99547 * 180.02562 * 8 7 6 31 31 H 1.09004 * 109.47265 * 59.99994 * 13 11 9 32 32 H 1.08997 * 109.47095 * 179.97438 * 13 11 9 33 33 H 1.09005 * 109.47155 * 299.99647 * 13 11 9 34 34 H 0.97009 * 119.99813 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3105 1.4431 -1.0468 6 7 5.5555 1.4435 -0.8376 7 6 5.9595 1.4438 0.3970 8 7 7.2856 1.4391 0.8160 9 6 8.2798 1.4342 -0.0940 10 8 8.0180 1.4336 -1.2782 11 6 9.7168 1.4296 0.3601 12 1 9.9117 2.3198 0.9582 13 6 9.9812 0.1806 1.2032 14 6 10.6238 1.4241 -0.8435 15 1 10.2020 1.4243 -1.8376 16 6 11.9923 1.4187 -0.6753 17 7 12.5060 1.4179 0.5353 18 14 13.1166 1.4125 -2.1670 19 1 13.4202 2.8109 -2.5639 20 1 14.3800 0.7077 -1.8317 21 1 12.4434 0.7140 -3.2913 22 16 4.5880 1.4428 1.4235 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 7.4949 1.4393 1.7630 31 1 9.7864 -0.7096 0.6049 32 1 11.0207 0.1770 1.5312 33 1 9.3252 0.1842 2.0737 34 1 13.4688 1.4137 0.6537 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596887098.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:22 Heat of formation + Delta-G solvation = -5.846929 kcal Electronic energy + Delta-G solvation = -17745.262578 eV Core-core repulsion = 14804.373311 eV Total energy + Delta-G solvation = -2940.889267 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.38210 -40.78094 -36.73102 -35.89648 -35.83306 -32.78275 -31.56507 -28.74236 -27.26881 -26.40669 -24.74155 -22.94294 -22.16936 -21.00588 -19.74367 -18.80413 -18.18026 -17.46416 -17.11757 -16.53127 -15.98589 -15.83656 -15.47087 -15.06593 -14.58729 -14.44664 -14.17634 -13.61818 -13.08466 -13.02870 -12.87426 -12.79765 -12.66018 -12.49191 -12.25631 -12.07563 -12.01057 -11.68814 -11.53747 -11.21331 -11.11041 -10.64730 -10.58110 -10.40717 -9.80396 -8.20837 -6.31139 -0.56659 -0.46027 0.14129 1.38752 1.40259 1.40772 1.51858 1.82945 1.90607 2.41807 3.09604 3.17581 3.61489 4.00223 4.08936 4.22403 4.24471 4.64947 4.67241 4.77484 4.80641 4.84420 4.92482 4.96601 5.00792 5.24831 5.30751 5.40934 5.47466 5.69128 5.80646 6.06356 6.27997 6.75582 7.10296 7.37624 7.67847 8.85004 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.047968 B = 0.003757 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.580291 B = 7450.563665 C = 7796.326822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.033 4.033 4 C 0.004 3.996 5 N -0.271 5.271 6 N -0.333 5.333 7 C 0.209 3.791 8 N -0.621 5.621 9 C 0.516 3.484 10 O -0.519 6.519 11 C 0.037 3.963 12 H 0.058 0.942 13 C -0.125 4.125 14 C -0.536 4.536 15 H 0.046 0.954 16 C 0.027 3.973 17 N -0.906 5.906 18 Si 0.954 3.046 19 H -0.274 1.274 20 H -0.271 1.271 21 H -0.282 1.282 22 S 0.184 5.816 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.439 0.561 31 H 0.023 0.977 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.285 -1.114 9.412 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.075 4.075 4 C -0.279 4.279 5 N -0.106 5.106 6 N -0.177 5.177 7 C -0.161 4.161 8 N -0.276 5.276 9 C 0.303 3.697 10 O -0.390 6.390 11 C 0.015 3.985 12 H 0.075 0.925 13 C -0.183 4.183 14 C -0.574 4.574 15 H 0.065 0.935 16 C -0.174 4.174 17 N -0.544 5.544 18 Si 0.780 3.220 19 H -0.200 1.200 20 H -0.196 1.196 21 H -0.207 1.207 22 S 0.424 5.576 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.140 0.860 29 H 0.122 0.878 30 H 0.281 0.719 31 H 0.042 0.958 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.029 -1.108 8.325 22.644 hybrid contribution 1.266 0.027 -0.681 1.438 sum -19.763 -1.080 7.644 21.217 Atomic orbital electron populations 1.21734 0.93090 1.02626 1.02955 1.21549 0.97699 0.94186 1.02392 1.20520 0.80624 0.99927 1.06438 1.30718 1.04127 1.04350 0.88695 1.71384 0.96051 1.15120 1.28072 1.71517 1.07183 1.21765 1.17283 1.26405 0.93915 1.01968 0.93804 1.43425 0.99671 1.72166 1.12321 1.22378 0.88616 0.73099 0.85603 1.90671 1.84229 1.45267 1.18794 1.18862 0.84150 0.98218 0.97278 0.92477 1.21641 1.03980 0.95372 0.97280 1.21239 0.91492 1.52012 0.92679 0.93533 1.25503 0.98853 0.94302 0.98691 1.69910 1.12694 1.50385 1.21459 0.85618 0.78288 0.78387 0.79736 1.19985 1.19603 1.20741 1.84107 0.94365 1.70321 1.08769 0.92035 0.90926 0.92168 0.93169 0.91095 0.86020 0.87825 0.71895 0.95777 0.90302 0.92202 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.12 -1.59 5.92 30.59 0.18 -1.41 16 3 C -0.03 -0.48 5.84 29.85 0.17 -0.31 16 4 C 0.00 0.10 7.05 88.45 0.62 0.73 16 5 N -0.27 -9.78 11.65 -47.67 -0.56 -10.33 16 6 N -0.33 -14.21 9.74 -59.09 -0.58 -14.78 16 7 C 0.21 7.31 8.14 179.10 1.46 8.77 16 8 N -0.62 -21.94 5.30 -313.16 -1.66 -23.60 16 9 C 0.52 24.17 7.11 87.66 0.62 24.79 16 10 O -0.52 -29.38 14.14 -3.03 -0.04 -29.42 16 11 C 0.04 1.79 2.64 -12.29 -0.03 1.76 16 12 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 13 C -0.12 -5.39 8.86 71.98 0.64 -4.75 16 14 C -0.54 -30.84 8.37 25.60 0.21 -30.63 16 15 H 0.05 2.91 6.75 -2.91 -0.02 2.89 16 16 C 0.03 1.46 5.30 84.66 0.45 1.91 16 17 N -0.91 -49.39 11.32 21.45 0.24 -49.15 16 18 Si 0.95 44.88 29.54 68.60 2.03 46.90 16 19 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 22 S 0.18 3.99 23.31 -56.49 -1.32 2.68 16 23 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 24 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.44 11.40 8.24 -92.71 -0.76 10.64 16 31 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 3.77 6.07 -2.39 -0.01 3.75 16 33 H 0.06 1.97 7.56 -2.38 -0.02 1.95 16 34 H 0.27 13.80 8.31 -92.70 -0.77 13.02 16 Total: -1.00 -75.49 305.68 3.52 -71.97 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 0.36 Total: 5.48 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 5.04 Total: 0.25 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -2.55 Total: -97.86 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.04 Total: -29.42 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.32 Total: 2.68 kcal Total: -75.49 3.52 -71.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596887098.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.124 kcal (2) G-P(sol) polarization free energy of solvation -75.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds