Wall clock time and date at job start Mon Mar 30 2020 05:10:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.35379 * 126.13173 * 2 1
4 4 Cl 1.73602 * 126.04622 * 0.03101 * 3 2 1
5 5 C 1.39924 * 107.90359 * 180.02562 * 3 2 1
6 6 C 1.50702 * 125.89251 * 180.02562 * 5 3 2
7 7 N 1.46903 * 109.47215 * 89.99573 * 6 5 3
8 8 C 1.47475 * 110.99953 * 265.97380 * 7 6 5
9 9 C 1.53513 * 87.92911 * 221.29548 * 8 7 6
10 10 C 1.50700 * 114.34371 * 139.68574 * 9 8 7
11 11 H 1.07998 * 120.00136 * 266.07972 * 10 9 8
12 12 C 1.37884 * 120.00228 * 86.07372 * 10 9 8
13 13 N 1.31519 * 119.99451 * 0.02562 * 12 10 9
14 14 Si 1.86800 * 120.00121 * 180.02562 * 12 10 9
15 15 H 1.48496 * 109.47264 * 60.00217 * 14 12 10
16 16 H 1.48503 * 109.46853 * 180.02562 * 14 12 10
17 17 H 1.48503 * 109.46753 * 300.00047 * 14 12 10
18 18 C 1.47483 * 110.99726 * 170.00063 * 7 6 5
19 19 N 1.30848 * 108.21791 * 359.97438 * 5 3 2
20 20 N 1.35038 * 126.13709 * 179.68712 * 2 1 3
21 21 C 1.46497 * 126.03756 * 359.96735 * 20 2 1
22 22 H 1.08999 * 109.46995 * 90.02728 * 1 2 3
23 23 H 1.08994 * 109.46790 * 210.02415 * 1 2 3
24 24 H 1.08997 * 109.47305 * 330.02856 * 1 2 3
25 25 H 1.09003 * 109.47259 * 209.99827 * 6 5 3
26 26 H 1.09002 * 109.46768 * 329.99905 * 6 5 3
27 27 H 1.09004 * 113.48030 * 336.06197 * 8 7 6
28 28 H 1.09004 * 113.47692 * 106.53466 * 8 7 6
29 29 H 1.09007 * 114.17447 * 272.37706 * 9 8 7
30 30 H 0.97002 * 119.99621 * 179.97438 * 13 12 10
31 31 H 1.08999 * 113.47368 * 253.46579 * 18 7 6
32 32 H 1.08998 * 113.47942 * 23.88033 * 18 7 6
33 33 H 1.08996 * 109.47468 * 90.00106 * 21 20 2
34 34 H 1.09005 * 109.47366 * 209.99708 * 21 20 2
35 35 H 1.08999 * 109.47302 * 329.99705 * 21 20 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3053 1.0934 0.0000
4 17 1.7740 2.7461 0.0008
5 6 3.6343 0.6557 -0.0006
6 6 4.8554 1.5390 -0.0003
7 7 5.2524 1.8251 1.3849
8 6 4.6642 3.0943 1.8518
9 6 6.0096 3.4069 2.5217
10 6 6.4458 4.8441 2.3984
11 1 7.0986 5.1430 1.5916
12 6 6.0115 5.7776 3.3156
13 7 5.2168 5.4135 4.2983
14 14 6.5517 7.5592 3.1623
15 1 6.1003 8.1027 1.8561
16 1 5.9523 8.3547 4.2637
17 1 8.0324 7.6363 3.2455
18 6 6.5711 2.4839 1.4313
19 7 3.6341 -0.6528 -0.0004
20 7 2.3034 -1.0906 0.0060
21 6 1.8550 -2.4852 0.0142
22 1 -0.3633 -0.0005 -1.0277
23 1 -0.3633 -0.8897 0.5142
24 1 -0.3634 0.8902 0.5134
25 1 5.6713 1.0311 -0.5146
26 1 4.6280 2.4734 -0.5134
27 1 4.4123 3.7799 1.0427
28 1 3.8471 2.9594 2.5606
29 1 6.1066 3.0130 3.5335
30 1 4.9116 6.0701 4.9437
31 1 7.3701 1.8316 1.7837
32 1 6.8286 3.0056 0.5096
33 1 1.7433 -2.8371 -1.0113
34 1 2.5913 -3.1006 0.5313
35 1 0.8967 -2.5557 0.5290
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597203760.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:10:29
Heat of formation + Delta-G solvation = 104.538026 kcal
Electronic energy + Delta-G solvation = -18274.523164 eV
Core-core repulsion = 15336.376842 eV
Total energy + Delta-G solvation = -2938.146323 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 269.099 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-41.27223 -38.75303 -36.14393 -34.02118 -32.53065 -31.88047 -29.95348 -26.98975
-26.83130 -25.10702 -24.63063 -22.50550 -20.33944 -19.37835 -18.51837 -16.86238
-16.42842 -15.84045 -14.80221 -14.73767 -14.41973 -14.21458 -13.95856 -13.47789
-13.24705 -13.05313 -12.60927 -12.48773 -12.40155 -11.85011 -11.55860 -11.41145
-11.14546 -11.03610 -10.90990 -10.62172 -10.30812 -10.07320 -9.73828 -9.39447
-8.93070 -8.83687 -8.36674 -8.16017 -7.91808 -5.98696 -4.02933 1.75971
2.12251 2.69796 2.95319 3.34620 3.39440 3.41712 4.44637 4.46757
4.48837 4.82653 4.91786 5.01098 5.18378 5.21714 5.30088 5.32054
5.48112 5.64691 5.69935 5.87158 6.02218 6.22078 6.40468 6.52558
6.59537 6.76178 6.81161 6.89938 7.26910 7.28238 7.73944 7.79403
7.97834 8.14574 8.44622 8.99743 9.61446 11.10910
Molecular weight = 269.10amu
Principal moments of inertia in cm(-1)
A = 0.029642 B = 0.004865 C = 0.004463
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 944.384605 B = 5753.508191 C = 6272.906090
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.091 4.091
2 C 0.089 3.911
3 C -0.177 4.177
4 Cl -0.037 7.037
5 C 0.122 3.878
6 C 0.094 3.906
7 N -0.477 5.477
8 C 0.013 3.987
9 C 0.040 3.960
10 C -0.515 4.515
11 H 0.057 0.943
12 C 0.068 3.932
13 N -0.886 5.886
14 Si 0.890 3.110
15 H -0.277 1.277
16 H -0.287 1.287
17 H -0.276 1.276
18 C -0.003 4.003
19 N -0.276 5.276
20 N -0.374 5.374
21 C 0.106 3.894
22 H 0.082 0.918
23 H 0.072 0.928
24 H 0.089 0.911
25 H 0.079 0.921
26 H 0.065 0.935
27 H 0.057 0.943
28 H 0.062 0.938
29 H 0.063 0.937
30 H 0.261 0.739
31 H 0.063 0.937
32 H 0.055 0.945
33 H 0.073 0.927
34 H 0.091 0.909
35 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.322 -12.331 -9.814 18.839
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.039 4.039
3 C -0.215 4.215
4 Cl -0.008 7.008
5 C -0.046 4.046
6 C -0.036 4.036
7 N -0.201 5.201
8 C -0.116 4.116
9 C 0.021 3.979
10 C -0.554 4.554
11 H 0.075 0.925
12 C -0.135 4.135
13 N -0.523 5.523
14 Si 0.717 3.283
15 H -0.202 1.202
16 H -0.213 1.213
17 H -0.202 1.202
18 C -0.132 4.132
19 N -0.098 5.098
20 N -0.157 5.157
21 C -0.035 4.035
22 H 0.100 0.900
23 H 0.091 0.909
24 H 0.107 0.893
25 H 0.098 0.902
26 H 0.083 0.917
27 H 0.075 0.925
28 H 0.080 0.920
29 H 0.081 0.919
30 H 0.071 0.929
31 H 0.081 0.919
32 H 0.074 0.926
33 H 0.092 0.908
34 H 0.109 0.891
35 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -9.940 -13.998 -9.322 19.536
hybrid contribution -0.337 2.402 -0.595 2.498
sum -10.277 -11.596 -9.917 18.396
Atomic orbital electron populations
1.20472 0.86803 1.04193 1.03448 1.20622 0.94568 0.86602 1.02124
1.20421 0.92850 0.86718 1.21537 1.98330 1.89907 1.14943 1.97666
1.22157 0.94313 0.91080 0.97072 1.21044 0.91960 0.96104 0.94530
1.68876 1.06221 1.30028 1.14938 1.24094 1.01106 0.87372 0.98994
1.20105 0.90249 0.93677 0.93869 1.20988 1.30061 0.92500 1.11807
0.92458 1.25005 0.94804 0.98761 0.94939 1.69969 1.33396 1.34343
1.14582 0.86702 0.78962 0.84948 0.77642 1.20238 1.21298 1.20185
1.24022 0.91826 0.96533 1.00797 1.77478 0.95574 1.11539 1.25202
1.48170 1.03994 1.05605 1.57904 1.21816 1.01061 0.77464 1.03201
0.89973 0.90902 0.89251 0.90232 0.91692 0.92491 0.91982 0.91884
0.92882 0.91878 0.92628 0.90809 0.89054 0.89575
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.82 9.95 36.01 0.36 -0.46 16
2 C 0.09 1.22 6.94 -82.20 -0.57 0.65 16
3 C -0.18 -2.94 6.63 -39.97 -0.27 -3.20 16
4 Cl -0.04 -0.60 28.58 -51.86 -1.48 -2.08 16
5 C 0.12 2.21 6.80 -82.38 -0.56 1.65 16
6 C 0.09 1.76 5.24 -4.97 -0.03 1.73 16
7 N -0.48 -10.30 6.32 -246.08 -1.55 -11.86 16
8 C 0.01 0.31 7.28 -7.54 -0.05 0.26 16
9 C 0.04 1.03 3.76 -91.24 -0.34 0.69 16
10 C -0.52 -14.18 8.83 -34.44 -0.30 -14.49 16
11 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16
12 C 0.07 1.89 5.46 -17.81 -0.10 1.79 16
13 N -0.89 -25.92 13.26 55.43 0.74 -25.18 16
14 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16
15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16
18 C 0.00 -0.07 7.25 -7.54 -0.05 -0.12 16
19 N -0.28 -4.84 12.57 33.68 0.42 -4.42 16
20 N -0.37 -5.16 4.02 -63.85 -0.26 -5.42 16
21 C 0.11 0.87 11.28 59.85 0.67 1.54 16
22 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16
23 H 0.07 0.49 7.08 -51.93 -0.37 0.12 16
24 H 0.09 0.83 7.91 -51.93 -0.41 0.42 16
25 H 0.08 1.38 8.08 -51.93 -0.42 0.96 16
26 H 0.07 1.20 7.16 -51.93 -0.37 0.83 16
27 H 0.06 1.36 7.38 -51.93 -0.38 0.97 16
28 H 0.06 1.58 8.14 -51.93 -0.42 1.15 16
29 H 0.06 1.78 8.11 -51.93 -0.42 1.36 16
30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16
31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16
32 H 0.06 1.16 7.87 -51.93 -0.41 0.75 16
33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16
35 H 0.09 0.48 7.05 -51.93 -0.37 0.11 16
LS Contribution 312.49 15.07 4.71 4.71
Total: -1.00 -31.95 312.49 -8.50 -40.45
By element:
Atomic # 1 Polarization: 2.31 SS G_CDS: -4.81 Total: -2.50 kcal
Atomic # 6 Polarization: -8.72 SS G_CDS: -1.24 Total: -9.96 kcal
Atomic # 7 Polarization: -46.22 SS G_CDS: -0.65 Total: -46.87 kcal
Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal
Atomic # 17 Polarization: -0.60 SS G_CDS: -1.48 Total: -2.08 kcal
Total LS contribution 4.71 Total: 4.71 kcal
Total: -31.95 -8.50 -40.45 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597203760.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 144.984 kcal
(2) G-P(sol) polarization free energy of solvation -31.950 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.034 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal
(6) G-S(sol) free energy of system = (1) + (5) 104.538 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds