Wall clock time and date at job start Mon Mar 30 2020 05:10:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.35379 * 126.13173 * 2 1
4 4 Cl 1.73602 * 126.04622 * 0.03101 * 3 2 1
5 5 C 1.39924 * 107.90359 * 180.02562 * 3 2 1
6 6 C 1.50702 * 125.89251 * 180.02562 * 5 3 2
7 7 N 1.46903 * 109.47215 * 89.99573 * 6 5 3
8 8 C 1.47475 * 110.99953 * 265.97380 * 7 6 5
9 9 C 1.53513 * 87.92911 * 221.29548 * 8 7 6
10 10 C 1.50700 * 114.34371 * 139.68574 * 9 8 7
11 11 H 1.07998 * 120.00136 * 266.07972 * 10 9 8
12 12 C 1.37884 * 120.00228 * 86.07372 * 10 9 8
13 13 N 1.31519 * 119.99451 * 0.02562 * 12 10 9
14 14 Si 1.86800 * 120.00121 * 180.02562 * 12 10 9
15 15 H 1.48496 * 109.47264 * 60.00217 * 14 12 10
16 16 H 1.48503 * 109.46853 * 180.02562 * 14 12 10
17 17 H 1.48503 * 109.46753 * 300.00047 * 14 12 10
18 18 C 1.47483 * 110.99726 * 170.00063 * 7 6 5
19 19 N 1.30848 * 108.21791 * 359.97438 * 5 3 2
20 20 N 1.35038 * 126.13709 * 179.68712 * 2 1 3
21 21 C 1.46497 * 126.03756 * 359.96735 * 20 2 1
22 22 H 1.08999 * 109.46995 * 90.02728 * 1 2 3
23 23 H 1.08994 * 109.46790 * 210.02415 * 1 2 3
24 24 H 1.08997 * 109.47305 * 330.02856 * 1 2 3
25 25 H 1.09003 * 109.47259 * 209.99827 * 6 5 3
26 26 H 1.09002 * 109.46768 * 329.99905 * 6 5 3
27 27 H 1.09004 * 113.48030 * 336.06197 * 8 7 6
28 28 H 1.09004 * 113.47692 * 106.53466 * 8 7 6
29 29 H 1.09007 * 114.17447 * 272.37706 * 9 8 7
30 30 H 0.97002 * 119.99621 * 179.97438 * 13 12 10
31 31 H 1.08999 * 113.47368 * 253.46579 * 18 7 6
32 32 H 1.08998 * 113.47942 * 23.88033 * 18 7 6
33 33 H 1.08996 * 109.47468 * 90.00106 * 21 20 2
34 34 H 1.09005 * 109.47366 * 209.99708 * 21 20 2
35 35 H 1.08999 * 109.47302 * 329.99705 * 21 20 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3053 1.0934 0.0000
4 17 1.7740 2.7461 0.0008
5 6 3.6343 0.6557 -0.0006
6 6 4.8554 1.5390 -0.0003
7 7 5.2524 1.8251 1.3849
8 6 4.6642 3.0943 1.8518
9 6 6.0096 3.4069 2.5217
10 6 6.4458 4.8441 2.3984
11 1 7.0986 5.1430 1.5916
12 6 6.0115 5.7776 3.3156
13 7 5.2168 5.4135 4.2983
14 14 6.5517 7.5592 3.1623
15 1 6.1003 8.1027 1.8561
16 1 5.9523 8.3547 4.2637
17 1 8.0324 7.6363 3.2455
18 6 6.5711 2.4839 1.4313
19 7 3.6341 -0.6528 -0.0004
20 7 2.3034 -1.0906 0.0060
21 6 1.8550 -2.4852 0.0142
22 1 -0.3633 -0.0005 -1.0277
23 1 -0.3633 -0.8897 0.5142
24 1 -0.3634 0.8902 0.5134
25 1 5.6713 1.0311 -0.5146
26 1 4.6280 2.4734 -0.5134
27 1 4.4123 3.7799 1.0427
28 1 3.8471 2.9594 2.5606
29 1 6.1066 3.0130 3.5335
30 1 4.9116 6.0701 4.9437
31 1 7.3701 1.8316 1.7837
32 1 6.8286 3.0056 0.5096
33 1 1.7433 -2.8371 -1.0113
34 1 2.5913 -3.1006 0.5313
35 1 0.8967 -2.5557 0.5290
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597203760.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:10:29
Heat of formation + Delta-G solvation = 82.288630 kcal
Electronic energy + Delta-G solvation = -18275.487970 eV
Core-core repulsion = 15336.376842 eV
Total energy + Delta-G solvation = -2939.111129 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 269.099 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-42.41930 -40.55449 -37.35840 -35.29943 -34.45955 -32.80896 -31.51699 -28.38661
-27.96694 -26.63780 -26.40699 -24.21626 -21.48868 -20.64204 -20.38449 -18.63918
-17.76275 -16.99576 -16.59690 -16.27873 -15.73509 -15.68731 -15.60464 -14.52701
-14.39412 -14.12834 -13.92513 -13.55859 -13.40083 -13.33819 -13.12430 -12.97329
-12.79806 -12.56740 -12.42267 -12.26411 -12.07204 -11.66161 -11.38881 -11.21752
-10.86291 -10.47496 -10.18224 -9.70557 -9.31577 -8.11533 -6.22953 0.66737
1.07548 1.40929 1.45304 1.46848 1.54523 1.84406 2.45399 3.17498
3.34459 3.49656 3.60282 3.93504 4.07684 4.22703 4.30404 4.38654
4.42434 4.52661 4.59882 4.65179 4.70090 4.75654 4.86863 4.96546
4.98381 5.01269 5.23790 5.27886 5.50089 5.65202 5.87152 5.96116
6.30627 6.36679 6.54354 6.86005 7.45251 8.98345
Molecular weight = 269.10amu
Principal moments of inertia in cm(-1)
A = 0.029642 B = 0.004865 C = 0.004463
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 944.384605 B = 5753.508191 C = 6272.906090
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.090 4.090
2 C 0.104 3.896
3 C -0.211 4.211
4 Cl -0.046 7.046
5 C 0.097 3.903
6 C 0.098 3.902
7 N -0.481 5.481
8 C 0.035 3.965
9 C 0.021 3.979
10 C -0.529 4.529
11 H 0.062 0.938
12 C 0.016 3.984
13 N -0.923 5.923
14 Si 0.957 3.043
15 H -0.269 1.269
16 H -0.286 1.286
17 H -0.268 1.268
18 C 0.012 3.988
19 N -0.306 5.306
20 N -0.367 5.367
21 C 0.092 3.908
22 H 0.105 0.895
23 H 0.103 0.897
24 H 0.085 0.915
25 H 0.092 0.908
26 H 0.064 0.936
27 H 0.054 0.946
28 H 0.036 0.964
29 H 0.027 0.973
30 H 0.262 0.738
31 H 0.075 0.925
32 H 0.069 0.931
33 H 0.097 0.903
34 H 0.092 0.908
35 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.289 -13.210 -11.110 20.625
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.026 4.026
3 C -0.250 4.250
4 Cl -0.018 7.018
5 C -0.070 4.070
6 C -0.032 4.032
7 N -0.204 5.204
8 C -0.094 4.094
9 C 0.001 3.999
10 C -0.567 4.567
11 H 0.081 0.919
12 C -0.184 4.184
13 N -0.561 5.561
14 Si 0.782 3.218
15 H -0.194 1.194
16 H -0.211 1.211
17 H -0.193 1.193
18 C -0.116 4.116
19 N -0.129 5.129
20 N -0.150 5.150
21 C -0.047 4.047
22 H 0.123 0.877
23 H 0.122 0.878
24 H 0.103 0.897
25 H 0.110 0.890
26 H 0.082 0.918
27 H 0.072 0.928
28 H 0.054 0.946
29 H 0.046 0.954
30 H 0.071 0.929
31 H 0.094 0.906
32 H 0.087 0.913
33 H 0.115 0.885
34 H 0.110 0.890
35 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -10.892 -14.906 -10.634 21.305
hybrid contribution -0.104 2.506 -0.208 2.517
sum -10.996 -12.399 -10.842 19.804
Atomic orbital electron populations
1.20679 0.83268 1.05529 1.05301 1.21284 0.96498 0.85592 0.99213
1.20637 0.92989 0.87199 1.24141 1.98313 1.89849 1.15762 1.97844
1.22039 0.94601 0.91551 0.98775 1.20963 0.93153 0.96600 0.92495
1.68794 1.05680 1.28526 1.17413 1.23720 0.99136 0.88480 0.98103
1.20053 0.92533 0.93930 0.93347 1.21330 1.29959 0.93474 1.11950
0.91937 1.25833 0.94798 1.03187 0.94560 1.70109 1.34746 1.35762
1.15501 0.85627 0.78827 0.79530 0.77784 1.19377 1.21141 1.19254
1.23864 0.92260 0.95767 0.99737 1.77357 0.98174 1.11231 1.26132
1.48639 1.02787 1.07506 1.56030 1.22329 1.02510 0.74572 1.05303
0.87671 0.87802 0.89659 0.88982 0.91759 0.92753 0.94553 0.95427
0.92922 0.90636 0.91293 0.88478 0.88967 0.86223
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.32 9.95 71.24 0.71 -0.61 16
2 C 0.10 2.65 6.94 41.41 0.29 2.93 16
3 C -0.21 -6.91 6.63 22.02 0.15 -6.76 16
4 Cl -0.05 -1.50 28.58 -2.72 -0.08 -1.58 16
5 C 0.10 3.50 6.80 43.11 0.29 3.79 16
6 C 0.10 3.66 5.24 85.56 0.45 4.11 16
7 N -0.48 -20.98 6.32 -932.45 -5.89 -26.87 16
8 C 0.03 1.70 7.28 83.58 0.61 2.31 16
9 C 0.02 1.09 3.76 -11.20 -0.04 1.04 16
10 C -0.53 -29.44 8.83 25.60 0.23 -29.22 16
11 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16
12 C 0.02 0.87 5.46 84.66 0.46 1.34 16
13 N -0.92 -55.31 13.26 21.45 0.28 -55.03 16
14 Si 0.96 43.77 29.54 68.60 2.03 45.80 16
15 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16
16 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16
17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16
18 C 0.01 0.53 7.25 83.58 0.61 1.14 16
19 N -0.31 -10.46 12.57 -47.34 -0.60 -11.06 16
20 N -0.37 -9.32 4.02 -355.91 -1.43 -10.75 16
21 C 0.09 1.19 11.28 127.77 1.44 2.63 16
22 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16
23 H 0.10 0.90 7.08 -2.39 -0.02 0.88 16
24 H 0.08 1.39 7.91 -2.39 -0.02 1.37 16
25 H 0.09 3.15 8.08 -2.39 -0.02 3.13 16
26 H 0.06 2.38 7.16 -2.39 -0.02 2.37 16
27 H 0.05 2.66 7.38 -2.38 -0.02 2.64 16
28 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16
29 H 0.03 1.63 8.11 -2.38 -0.02 1.61 16
30 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16
31 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16
32 H 0.07 2.81 7.87 -2.39 -0.02 2.79 16
33 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16
34 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16
35 H 0.12 0.77 7.05 -2.39 -0.02 0.75 16
Total: -1.00 -70.67 312.49 0.59 -70.09
By element:
Atomic # 1 Polarization: 5.60 SS G_CDS: 1.09 Total: 6.69 kcal
Atomic # 6 Polarization: -22.48 SS G_CDS: 5.18 Total: -17.29 kcal
Atomic # 7 Polarization: -96.07 SS G_CDS: -7.63 Total: -103.70 kcal
Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal
Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal
Total: -70.67 0.59 -70.09 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597203760.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 152.374 kcal
(2) G-P(sol) polarization free energy of solvation -70.675 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.699 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.085 kcal
(6) G-S(sol) free energy of system = (1) + (5) 82.289 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds