Wall clock time and date at job start Mon Mar 30 2020 04:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29413 * 125.69450 * 2 1 4 4 N 1.26397 * 116.47157 * 180.02562 * 3 2 1 5 5 C 1.29414 * 116.47954 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.69773 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47343 * 165.01884 * 6 5 4 8 8 C 1.52995 * 109.47142 * 285.02573 * 6 5 4 9 9 N 1.46500 * 109.47000 * 45.02353 * 6 5 4 10 10 C 1.34780 * 120.00188 * 155.00147 * 9 6 5 11 11 O 1.21285 * 119.99712 * 359.97438 * 10 9 6 12 12 C 1.50699 * 120.00249 * 179.97438 * 10 9 6 13 13 H 1.09000 * 109.47247 * 299.99984 * 12 10 9 14 14 C 1.53006 * 109.46866 * 59.99816 * 12 10 9 15 15 C 1.50697 * 109.46956 * 179.97438 * 12 10 9 16 16 H 1.07994 * 120.00496 * 0.02562 * 15 12 10 17 17 C 1.37887 * 119.99690 * 180.02562 * 15 12 10 18 18 N 1.31507 * 120.00093 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99676 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47515 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46678 * 119.99923 * 19 17 15 22 22 H 1.48493 * 109.47346 * 239.99833 * 19 17 15 23 23 S 1.71216 * 108.60530 * 0.22299 * 5 4 3 24 24 H 1.08994 * 109.46673 * 89.97838 * 1 2 3 25 25 H 1.09000 * 109.46768 * 209.97509 * 1 2 3 26 26 H 1.08999 * 109.46691 * 329.97407 * 1 2 3 27 27 H 1.09001 * 109.46855 * 299.99470 * 8 6 5 28 28 H 1.08999 * 109.47491 * 59.99966 * 8 6 5 29 29 H 1.09001 * 109.47252 * 180.02562 * 8 6 5 30 30 H 0.96998 * 119.99994 * 334.99724 * 9 6 5 31 31 H 1.09001 * 109.47002 * 179.97438 * 14 12 10 32 32 H 1.08993 * 109.46955 * 300.00219 * 14 12 10 33 33 H 1.09000 * 109.47050 * 60.00048 * 14 12 10 34 34 H 0.96999 * 120.00118 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5098 0.8484 -0.0005 5 6 3.8937 -0.3875 -0.0015 6 6 5.3233 -0.8642 -0.0028 7 1 5.3542 -1.9209 0.2622 8 6 5.9244 -0.6699 -1.3962 9 7 6.0960 -0.0930 0.9742 10 6 7.2085 -0.6213 1.5218 11 8 7.5696 -1.7353 1.2060 12 6 8.0038 0.1721 2.5263 13 1 8.3507 1.0973 2.0660 14 6 7.1197 0.5020 3.7307 15 6 9.1898 -0.6386 2.9813 16 1 9.3518 -1.6291 2.5827 17 6 10.0682 -0.1157 3.9067 18 7 9.8712 1.0907 4.3917 19 14 11.5387 -1.1204 4.4701 20 1 11.5352 -2.4342 3.7779 21 1 12.7906 -0.3920 4.1423 22 1 11.4597 -1.3334 5.9376 23 16 2.5061 -1.3905 -0.0081 24 1 -0.3632 0.0004 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5142 27 1 5.3494 -1.2437 -2.1231 28 1 5.8936 0.3869 -1.6612 29 1 6.9583 -1.0151 -1.3973 30 1 5.8071 0.7978 1.2269 31 1 7.6950 1.0755 4.4575 32 1 6.2616 1.0881 3.4019 33 1 6.7728 -0.4232 4.1910 34 1 10.4889 1.4584 5.0430 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597503696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:32 Heat of formation + Delta-G solvation = 14.737098 kcal Electronic energy + Delta-G solvation = -18097.171195 eV Core-core repulsion = 15157.174518 eV Total energy + Delta-G solvation = -2939.996677 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.48300 -39.00518 -35.61313 -33.73076 -32.94985 -31.21618 -29.72050 -28.48021 -25.69464 -25.12023 -23.63304 -22.15104 -19.95565 -19.61758 -18.91675 -16.73475 -16.18663 -16.03084 -15.43507 -14.87428 -14.35738 -14.29067 -13.86995 -13.53725 -13.39640 -13.14634 -12.94196 -12.70507 -12.27774 -12.06524 -11.62656 -11.38455 -11.01681 -10.71188 -10.67776 -10.60650 -10.38228 -10.23891 -9.96667 -9.89482 -9.80277 -8.95176 -8.66986 -8.58782 -8.33029 -6.01642 -4.05091 0.22611 0.67676 1.16173 2.39277 3.33355 3.40864 3.48617 3.61360 3.76732 3.84391 4.28704 4.48690 4.64649 4.90783 5.01759 5.20348 5.26808 5.31548 5.34827 5.51213 5.65674 5.87717 6.20966 6.29237 6.64889 6.85028 6.90679 6.97660 7.48992 7.76990 7.98964 8.13982 8.39202 8.42195 9.03967 9.16503 9.60316 11.06000 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.038411 B = 0.004137 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.780318 B = 6766.996701 C = 7049.291284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.026 4.026 3 N -0.259 5.259 4 N -0.249 5.249 5 C -0.017 4.017 6 C 0.226 3.774 7 H 0.106 0.894 8 C -0.155 4.155 9 N -0.735 5.735 10 C 0.524 3.476 11 O -0.544 6.544 12 C 0.031 3.969 13 H 0.055 0.945 14 C -0.133 4.133 15 C -0.500 4.500 16 H 0.075 0.925 17 C 0.058 3.942 18 N -0.896 5.896 19 Si 0.899 3.101 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.285 1.285 23 S 0.178 5.822 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.405 0.595 31 H 0.094 0.906 32 H 0.012 0.988 33 H 0.030 0.970 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.166 -3.192 -9.326 20.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.305 4.305 3 N -0.098 5.098 4 N -0.087 5.087 5 C -0.296 4.296 6 C 0.116 3.884 7 H 0.123 0.877 8 C -0.215 4.215 9 N -0.391 5.391 10 C 0.314 3.686 11 O -0.419 6.419 12 C 0.009 3.991 13 H 0.073 0.927 14 C -0.191 4.191 15 C -0.539 4.539 16 H 0.093 0.907 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.211 1.211 23 S 0.422 5.578 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.112 0.888 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.240 0.760 31 H 0.113 0.887 32 H 0.031 0.969 33 H 0.049 0.951 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.763 -3.536 -9.421 20.415 hybrid contribution 0.561 0.141 0.468 0.744 sum -17.202 -3.395 -8.953 19.688 Atomic orbital electron populations 1.20368 0.83931 1.04736 1.04244 1.29260 1.04327 0.92055 1.04818 1.71464 0.96906 1.26770 1.14617 1.71371 1.06342 1.16853 1.14101 1.29497 1.03242 0.92840 1.04037 1.19216 0.80339 0.97187 0.91655 0.87661 1.22185 1.02418 1.02937 0.94004 1.46398 1.27811 1.20334 1.44557 1.22096 0.78705 0.87234 0.80533 1.90529 1.68519 1.20677 1.62223 1.18893 0.93513 0.96108 0.90546 0.92737 1.21748 0.96833 0.99768 1.00730 1.21177 1.06746 1.02499 1.23470 0.90652 1.24960 0.98087 0.95078 0.96157 1.69882 1.37323 1.15580 1.30718 0.86399 0.82154 0.80455 0.78252 1.19550 1.21056 1.21079 1.83703 0.97338 1.11623 1.65133 0.89187 0.89709 0.88778 0.92014 0.91530 0.90127 0.76007 0.88745 0.96903 0.95051 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.49 36.01 0.38 -0.06 16 2 C -0.03 -0.28 7.53 -13.29 -0.10 -0.38 16 3 N -0.26 -3.70 11.66 32.58 0.38 -3.32 16 4 N -0.25 -3.85 11.32 32.58 0.37 -3.48 16 5 C -0.02 -0.23 6.34 -13.30 -0.08 -0.31 16 6 C 0.23 3.43 3.09 -69.09 -0.21 3.21 16 7 H 0.11 1.62 7.58 -51.93 -0.39 1.23 16 8 C -0.16 -2.12 9.47 37.15 0.35 -1.77 16 9 N -0.73 -13.37 4.96 -54.94 -0.27 -13.64 16 10 C 0.52 11.87 7.11 -10.98 -0.08 11.79 16 11 O -0.54 -13.67 15.12 5.55 0.08 -13.59 16 12 C 0.03 0.77 2.64 -92.92 -0.25 0.52 16 13 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 14 C -0.13 -3.13 8.87 37.16 0.33 -2.80 16 15 C -0.50 -14.19 8.37 -34.44 -0.29 -14.48 16 16 H 0.08 2.24 6.75 -52.49 -0.35 1.89 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 18 N -0.90 -25.34 11.32 55.43 0.63 -24.71 16 19 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 S 0.18 1.82 23.04 -107.50 -2.48 -0.66 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.40 7.11 7.75 -40.82 -0.32 6.79 16 31 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 32 H 0.01 0.25 7.56 -51.93 -0.39 -0.14 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 306.64 15.07 4.62 4.62 Total: -1.00 -32.27 306.64 -6.02 -38.29 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -4.29 Total: 2.44 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -0.05 Total: -2.75 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 1.10 Total: -45.15 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.08 Total: -13.59 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.48 Total: -0.66 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.27 -6.02 -38.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597503696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.030 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds