Wall clock time and date at job start Mon Mar 30 2020 04:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29413 * 125.69450 * 2 1 4 4 N 1.26397 * 116.47157 * 180.02562 * 3 2 1 5 5 C 1.29414 * 116.47954 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.69773 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47343 * 165.01884 * 6 5 4 8 8 C 1.52995 * 109.47142 * 285.02573 * 6 5 4 9 9 N 1.46500 * 109.47000 * 45.02353 * 6 5 4 10 10 C 1.34780 * 120.00188 * 155.00147 * 9 6 5 11 11 O 1.21285 * 119.99712 * 359.97438 * 10 9 6 12 12 C 1.50699 * 120.00249 * 179.97438 * 10 9 6 13 13 H 1.09000 * 109.47247 * 299.99984 * 12 10 9 14 14 C 1.53006 * 109.46866 * 59.99816 * 12 10 9 15 15 C 1.50697 * 109.46956 * 179.97438 * 12 10 9 16 16 H 1.07994 * 120.00496 * 0.02562 * 15 12 10 17 17 C 1.37887 * 119.99690 * 180.02562 * 15 12 10 18 18 N 1.31507 * 120.00093 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99676 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47515 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46678 * 119.99923 * 19 17 15 22 22 H 1.48493 * 109.47346 * 239.99833 * 19 17 15 23 23 S 1.71216 * 108.60530 * 0.22299 * 5 4 3 24 24 H 1.08994 * 109.46673 * 89.97838 * 1 2 3 25 25 H 1.09000 * 109.46768 * 209.97509 * 1 2 3 26 26 H 1.08999 * 109.46691 * 329.97407 * 1 2 3 27 27 H 1.09001 * 109.46855 * 299.99470 * 8 6 5 28 28 H 1.08999 * 109.47491 * 59.99966 * 8 6 5 29 29 H 1.09001 * 109.47252 * 180.02562 * 8 6 5 30 30 H 0.96998 * 119.99994 * 334.99724 * 9 6 5 31 31 H 1.09001 * 109.47002 * 179.97438 * 14 12 10 32 32 H 1.08993 * 109.46955 * 300.00219 * 14 12 10 33 33 H 1.09000 * 109.47050 * 60.00048 * 14 12 10 34 34 H 0.96999 * 120.00118 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5098 0.8484 -0.0005 5 6 3.8937 -0.3875 -0.0015 6 6 5.3233 -0.8642 -0.0028 7 1 5.3542 -1.9209 0.2622 8 6 5.9244 -0.6699 -1.3962 9 7 6.0960 -0.0930 0.9742 10 6 7.2085 -0.6213 1.5218 11 8 7.5696 -1.7353 1.2060 12 6 8.0038 0.1721 2.5263 13 1 8.3507 1.0973 2.0660 14 6 7.1197 0.5020 3.7307 15 6 9.1898 -0.6386 2.9813 16 1 9.3518 -1.6291 2.5827 17 6 10.0682 -0.1157 3.9067 18 7 9.8712 1.0907 4.3917 19 14 11.5387 -1.1204 4.4701 20 1 11.5352 -2.4342 3.7779 21 1 12.7906 -0.3920 4.1423 22 1 11.4597 -1.3334 5.9376 23 16 2.5061 -1.3905 -0.0081 24 1 -0.3632 0.0004 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5142 27 1 5.3494 -1.2437 -2.1231 28 1 5.8936 0.3869 -1.6612 29 1 6.9583 -1.0151 -1.3973 30 1 5.8071 0.7978 1.2269 31 1 7.6950 1.0755 4.4575 32 1 6.2616 1.0881 3.4019 33 1 6.7728 -0.4232 4.1910 34 1 10.4889 1.4584 5.0430 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597503696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:32 Heat of formation + Delta-G solvation = -8.170253 kcal Electronic energy + Delta-G solvation = -18098.164532 eV Core-core repulsion = 15157.174518 eV Total energy + Delta-G solvation = -2940.990014 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.46828 -40.70356 -37.01627 -35.76902 -33.93071 -32.89625 -31.31713 -29.41165 -27.21820 -26.60019 -25.11036 -23.62264 -21.44292 -20.68819 -20.12407 -18.39415 -18.08913 -17.14319 -16.86780 -16.56236 -15.94806 -15.64925 -15.00337 -14.87870 -14.60768 -14.30102 -14.08996 -13.72576 -13.54281 -13.44067 -13.16348 -12.97736 -12.69156 -12.62033 -12.57354 -12.21976 -12.01885 -11.56939 -11.29621 -11.04701 -10.85945 -10.68353 -10.59750 -10.32878 -10.13616 -8.14735 -6.25765 -0.67585 -0.19363 0.26204 1.40883 1.41211 1.42881 1.56350 1.85292 2.30466 2.50296 2.76682 3.15046 3.46645 3.70249 4.03013 4.07721 4.26163 4.34658 4.62642 4.63575 4.70588 4.71992 4.78836 4.91466 4.98021 5.07912 5.12383 5.43680 5.47172 5.72592 5.91160 6.17743 6.62761 6.84417 7.36145 7.44466 7.48018 8.91625 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.038411 B = 0.004137 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.780318 B = 6766.996701 C = 7049.291284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.018 4.018 3 N -0.299 5.299 4 N -0.275 5.275 5 C -0.048 4.048 6 C 0.225 3.775 7 H 0.104 0.896 8 C -0.150 4.150 9 N -0.721 5.721 10 C 0.530 3.470 11 O -0.574 6.574 12 C 0.024 3.976 13 H 0.040 0.960 14 C -0.119 4.119 15 C -0.526 4.526 16 H 0.054 0.946 17 C 0.017 3.983 18 N -0.913 5.913 19 Si 0.959 3.041 20 H -0.276 1.276 21 H -0.276 1.276 22 H -0.275 1.275 23 S 0.248 5.752 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.408 0.592 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.026 0.974 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.102 -3.997 -9.713 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.296 4.296 3 N -0.138 5.138 4 N -0.113 5.113 5 C -0.328 4.328 6 C 0.116 3.884 7 H 0.122 0.878 8 C -0.209 4.209 9 N -0.375 5.375 10 C 0.319 3.681 11 O -0.453 6.453 12 C 0.002 3.998 13 H 0.057 0.943 14 C -0.177 4.177 15 C -0.564 4.564 16 H 0.072 0.928 17 C -0.182 4.182 18 N -0.553 5.553 19 Si 0.784 3.216 20 H -0.201 1.201 21 H -0.201 1.201 22 H -0.200 1.200 23 S 0.492 5.508 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.244 0.756 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.737 -4.319 -9.823 22.465 hybrid contribution 0.998 0.383 0.546 1.200 sum -18.739 -3.936 -9.277 21.277 Atomic orbital electron populations 1.20677 0.80733 1.06173 1.06031 1.30043 1.06192 0.91693 1.01715 1.71453 0.96795 1.28382 1.17131 1.71337 1.07443 1.18003 1.14517 1.29170 1.03635 0.93826 1.06143 1.19304 0.81272 0.96490 0.91294 0.87829 1.22121 1.01654 1.03215 0.93948 1.46125 1.26656 1.20447 1.44246 1.21489 0.79662 0.86512 0.80410 1.90506 1.69685 1.21758 1.63330 1.18822 0.93677 0.95396 0.91868 0.94253 1.21548 0.97151 0.99500 0.99484 1.21313 1.08646 1.02162 1.24317 0.92766 1.25650 1.00381 0.96103 0.96029 1.69971 1.38078 1.16428 1.30796 0.85491 0.79232 0.78791 0.78064 1.20065 1.20128 1.20019 1.83424 0.94383 1.09473 1.63476 0.87008 0.87120 0.88446 0.88958 0.91799 0.92056 0.75571 0.90963 0.94006 0.95511 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.49 71.24 0.75 0.10 16 2 C -0.02 -0.34 7.53 88.47 0.67 0.33 16 3 N -0.30 -8.12 11.66 -50.84 -0.59 -8.71 16 4 N -0.27 -8.25 11.32 -50.85 -0.58 -8.82 16 5 C -0.05 -1.27 6.34 88.46 0.56 -0.71 16 6 C 0.22 6.70 3.09 44.24 0.14 6.84 16 7 H 0.10 3.12 7.58 -2.39 -0.02 3.11 16 8 C -0.15 -4.00 9.47 71.98 0.68 -3.31 16 9 N -0.72 -26.31 4.96 -446.11 -2.21 -28.53 16 10 C 0.53 24.46 7.11 87.66 0.62 25.08 16 11 O -0.57 -29.53 15.12 -3.05 -0.05 -29.57 16 12 C 0.02 1.22 2.64 -12.29 -0.03 1.18 16 13 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 14 C -0.12 -5.64 8.87 71.98 0.64 -5.01 16 15 C -0.53 -30.56 8.37 25.60 0.21 -30.35 16 16 H 0.05 3.33 6.75 -2.91 -0.02 3.31 16 17 C 0.02 0.98 5.30 84.66 0.45 1.42 16 18 N -0.91 -52.08 11.32 21.45 0.24 -51.84 16 19 Si 0.96 45.04 29.54 68.60 2.03 47.06 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 23 S 0.25 4.38 23.04 -56.49 -1.30 3.07 16 24 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.41 14.36 7.75 -92.71 -0.72 13.64 16 31 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 32 H 0.04 1.69 7.56 -2.39 -0.02 1.67 16 33 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -70.79 306.64 2.63 -68.16 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.41 Total: 13.60 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 4.68 Total: -4.43 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -3.14 Total: -97.89 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.05 Total: -29.57 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.30 Total: 3.07 kcal Total: -70.79 2.63 -68.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597503696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.990 kcal (2) G-P(sol) polarization free energy of solvation -70.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds