Wall clock time and date at job start Mon Mar 30 2020 04:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29421 * 125.69657 * 2 1 4 4 N 1.26397 * 116.47405 * 179.67540 * 3 2 1 5 5 C 1.29415 * 116.47694 * 0.53612 * 4 3 2 6 6 C 1.50700 * 125.69562 * 179.76703 * 5 4 3 7 7 H 1.08996 * 109.47103 * 194.69650 * 6 5 4 8 8 C 1.53004 * 109.47075 * 74.69464 * 6 5 4 9 9 N 1.46498 * 109.47335 * 314.69387 * 6 5 4 10 10 C 1.34770 * 120.00284 * 205.00012 * 9 6 5 11 11 O 1.21283 * 119.99833 * 0.02562 * 10 9 6 12 12 C 1.50703 * 120.00307 * 180.02562 * 10 9 6 13 13 H 1.08995 * 109.47034 * 60.00225 * 12 10 9 14 14 C 1.53005 * 109.47012 * 299.99943 * 12 10 9 15 15 C 1.50704 * 109.47187 * 180.02562 * 12 10 9 16 16 H 1.07994 * 120.00471 * 35.09752 * 15 12 10 17 17 C 1.37881 * 119.99643 * 215.10918 * 15 12 10 18 18 N 1.31516 * 119.99696 * 184.90661 * 17 15 12 19 19 Si 1.86799 * 120.00269 * 4.89906 * 17 15 12 20 20 H 1.48496 * 109.46932 * 84.82446 * 19 17 15 21 21 H 1.48491 * 109.47212 * 204.82741 * 19 17 15 22 22 H 1.48507 * 109.46996 * 324.82915 * 19 17 15 23 23 S 1.71212 * 108.60636 * 359.50257 * 5 4 3 24 24 H 1.08997 * 109.47501 * 270.03975 * 1 2 3 25 25 H 1.09009 * 109.47125 * 30.04439 * 1 2 3 26 26 H 1.09003 * 109.46936 * 150.03756 * 1 2 3 27 27 H 1.09004 * 109.46698 * 179.97438 * 8 6 5 28 28 H 1.08997 * 109.46988 * 299.99621 * 8 6 5 29 29 H 1.08996 * 109.47387 * 59.99906 * 8 6 5 30 30 H 0.97000 * 120.00223 * 25.00022 * 9 6 5 31 31 H 1.08999 * 109.47215 * 295.07447 * 14 12 10 32 32 H 1.08996 * 109.46878 * 175.07571 * 14 12 10 33 33 H 1.08997 * 109.46791 * 55.07504 * 14 12 10 34 34 H 0.97001 * 120.00027 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8485 0.0064 5 6 3.8936 -0.3874 0.0014 6 6 5.3232 -0.8641 0.0023 7 1 5.3541 -1.9207 -0.2633 8 6 5.9244 -0.6707 1.3960 9 7 6.0960 -0.0924 -0.9742 10 6 7.2083 -0.6203 -1.5221 11 8 7.5694 -1.7344 -1.2071 12 6 8.0036 0.1738 -2.5262 13 1 8.3505 1.0986 -2.0653 14 6 7.1195 0.5043 -3.7304 15 6 9.1896 -0.6367 -2.9818 16 1 9.1041 -1.7083 -3.0845 17 6 10.3841 -0.0100 -3.2673 18 7 11.3894 -0.7025 -3.7566 19 14 10.5744 1.8226 -2.9594 20 1 10.9536 2.0495 -1.5417 21 1 11.6324 2.3666 -3.8481 22 1 9.2882 2.5084 -3.2436 23 16 2.5061 -1.3904 0.0011 24 1 -0.3634 0.0007 1.0276 25 1 -0.3634 0.8897 -0.5146 26 1 -0.3633 -0.8904 -0.5133 27 1 6.9583 -1.0160 1.3967 28 1 5.8936 0.3859 1.6615 29 1 5.3495 -1.2449 2.1225 30 1 5.8070 0.7986 -1.2264 31 1 6.8441 -0.4174 -4.2429 32 1 7.6664 1.1517 -4.4158 33 1 6.2181 1.0142 -3.3903 34 1 12.2297 -0.2615 -3.9579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597503698.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:39 Heat of formation + Delta-G solvation = 16.824493 kcal Electronic energy + Delta-G solvation = -18145.316738 eV Core-core repulsion = 15205.410577 eV Total energy + Delta-G solvation = -2939.906160 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.53510 -39.10814 -35.67209 -33.66602 -33.00092 -31.58314 -30.20905 -28.53830 -25.74495 -25.24591 -23.72651 -22.13006 -19.94051 -19.63318 -18.95819 -17.03463 -16.70921 -16.08024 -15.54468 -14.89604 -14.37512 -14.19325 -13.97540 -13.62645 -13.42857 -13.27813 -12.98782 -12.64247 -12.37540 -12.27471 -12.05358 -11.55597 -11.37518 -11.09028 -10.75203 -10.66624 -10.42852 -10.26903 -9.95183 -9.86530 -9.79702 -9.17417 -8.74540 -8.68389 -8.53383 -6.06570 -4.06007 0.17526 0.62816 1.11565 2.33618 3.26188 3.33772 3.35590 3.52977 3.70557 3.73708 4.23722 4.39451 4.59873 4.86100 4.97951 5.14903 5.22264 5.24651 5.30095 5.47214 5.61119 5.81358 6.02573 6.17062 6.22865 6.40470 6.52964 6.82189 6.87014 7.17891 7.54913 8.09896 8.34234 8.53203 9.06885 9.08779 9.53009 11.06522 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.035317 B = 0.004442 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.628554 B = 6302.654989 C = 6503.790060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.026 4.026 3 N -0.260 5.260 4 N -0.251 5.251 5 C -0.018 4.018 6 C 0.226 3.774 7 H 0.107 0.893 8 C -0.156 4.156 9 N -0.737 5.737 10 C 0.523 3.477 11 O -0.527 6.527 12 C -0.003 4.003 13 H 0.056 0.944 14 C -0.134 4.134 15 C -0.495 4.495 16 H 0.086 0.914 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.870 3.130 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.264 1.264 23 S 0.181 5.819 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.403 0.597 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.026 0.974 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.618 0.873 8.723 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.305 4.305 3 N -0.098 5.098 4 N -0.088 5.088 5 C -0.297 4.297 6 C 0.116 3.884 7 H 0.125 0.875 8 C -0.216 4.216 9 N -0.394 5.394 10 C 0.312 3.688 11 O -0.401 6.401 12 C -0.025 4.025 13 H 0.074 0.926 14 C -0.192 4.192 15 C -0.533 4.533 16 H 0.104 0.896 17 C -0.130 4.130 18 N -0.532 5.532 19 Si 0.697 3.303 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.189 1.189 23 S 0.425 5.575 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.238 0.762 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.086 0.399 8.865 22.877 hybrid contribution 0.068 1.556 0.069 1.559 sum -21.018 1.956 8.935 22.922 Atomic orbital electron populations 1.20371 0.83917 1.04742 1.04281 1.29261 1.04346 0.92088 1.04758 1.71464 0.96893 1.26791 1.14689 1.71369 1.06380 1.16882 1.14183 1.29493 1.03261 0.92883 1.04098 1.19232 0.80283 0.97216 0.91634 0.87503 1.22195 1.02548 1.02924 0.93981 1.46454 1.27862 1.20274 1.44820 1.21898 0.78644 0.87440 0.80819 1.90581 1.67882 1.20200 1.61413 1.19353 0.95279 0.96510 0.91327 0.92578 1.21956 0.97340 1.00690 0.99239 1.20732 0.92681 0.96040 1.43849 0.89557 1.25020 0.95670 0.97687 0.94576 1.69882 1.03600 1.36193 1.43521 0.86975 0.78214 0.86380 0.78713 1.20037 1.21233 1.18873 1.83737 0.97227 1.11501 1.64986 0.89156 0.88787 0.89682 0.90015 0.91570 0.91917 0.76223 0.92922 0.92581 0.95518 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.48 36.00 0.38 -0.03 16 2 C -0.03 -0.26 7.53 -13.30 -0.10 -0.36 16 3 N -0.26 -3.55 11.66 32.58 0.38 -3.17 16 4 N -0.25 -3.69 11.33 32.58 0.37 -3.32 16 5 C -0.02 -0.24 6.33 -13.30 -0.08 -0.32 16 6 C 0.23 3.30 3.09 -69.08 -0.21 3.09 16 7 H 0.11 1.59 7.58 -51.93 -0.39 1.20 16 8 C -0.16 -2.09 9.47 37.16 0.35 -1.74 16 9 N -0.74 -12.74 4.93 -54.93 -0.27 -13.01 16 10 C 0.52 11.43 7.11 -10.99 -0.08 11.35 16 11 O -0.53 -13.23 15.43 5.55 0.09 -13.14 16 12 C 0.00 -0.07 2.30 -92.92 -0.21 -0.28 16 13 H 0.06 1.29 5.29 -51.93 -0.27 1.01 16 14 C -0.13 -2.74 9.12 37.16 0.34 -2.40 16 15 C -0.49 -14.16 8.36 -34.44 -0.29 -14.45 16 16 H 0.09 2.79 7.61 -52.49 -0.40 2.39 16 17 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 18 N -0.89 -27.50 13.96 55.43 0.77 -26.73 16 19 Si 0.87 21.08 26.99 -169.99 -4.59 16.49 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.26 -5.95 6.82 56.52 0.39 -5.57 16 23 S 0.18 1.76 23.04 -107.50 -2.48 -0.72 16 24 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.40 6.52 7.69 -40.82 -0.31 6.20 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.03 0.45 7.43 -51.93 -0.39 0.07 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 306.68 15.07 4.62 4.62 Total: -1.00 -34.00 306.68 -5.41 -39.42 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.30 Total: 2.70 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -0.01 Total: -3.14 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 1.25 Total: -46.22 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.14 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.59 Total: 16.49 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.48 Total: -0.72 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.00 -5.41 -39.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597503698.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.241 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds