Wall clock time and date at job start Mon Mar 30 2020 04:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29421 * 125.69657 * 2 1 4 4 N 1.26397 * 116.47405 * 179.67540 * 3 2 1 5 5 C 1.29415 * 116.47694 * 0.53612 * 4 3 2 6 6 C 1.50700 * 125.69562 * 179.76703 * 5 4 3 7 7 H 1.08996 * 109.47103 * 194.69650 * 6 5 4 8 8 C 1.53004 * 109.47075 * 74.69464 * 6 5 4 9 9 N 1.46498 * 109.47335 * 314.69387 * 6 5 4 10 10 C 1.34770 * 120.00284 * 205.00012 * 9 6 5 11 11 O 1.21283 * 119.99833 * 0.02562 * 10 9 6 12 12 C 1.50703 * 120.00307 * 180.02562 * 10 9 6 13 13 H 1.08995 * 109.47034 * 60.00225 * 12 10 9 14 14 C 1.53005 * 109.47012 * 299.99943 * 12 10 9 15 15 C 1.50704 * 109.47187 * 180.02562 * 12 10 9 16 16 H 1.07994 * 120.00471 * 35.09752 * 15 12 10 17 17 C 1.37881 * 119.99643 * 215.10918 * 15 12 10 18 18 N 1.31516 * 119.99696 * 184.90661 * 17 15 12 19 19 Si 1.86799 * 120.00269 * 4.89906 * 17 15 12 20 20 H 1.48496 * 109.46932 * 84.82446 * 19 17 15 21 21 H 1.48491 * 109.47212 * 204.82741 * 19 17 15 22 22 H 1.48507 * 109.46996 * 324.82915 * 19 17 15 23 23 S 1.71212 * 108.60636 * 359.50257 * 5 4 3 24 24 H 1.08997 * 109.47501 * 270.03975 * 1 2 3 25 25 H 1.09009 * 109.47125 * 30.04439 * 1 2 3 26 26 H 1.09003 * 109.46936 * 150.03756 * 1 2 3 27 27 H 1.09004 * 109.46698 * 179.97438 * 8 6 5 28 28 H 1.08997 * 109.46988 * 299.99621 * 8 6 5 29 29 H 1.08996 * 109.47387 * 59.99906 * 8 6 5 30 30 H 0.97000 * 120.00223 * 25.00022 * 9 6 5 31 31 H 1.08999 * 109.47215 * 295.07447 * 14 12 10 32 32 H 1.08996 * 109.46878 * 175.07571 * 14 12 10 33 33 H 1.08997 * 109.46791 * 55.07504 * 14 12 10 34 34 H 0.97001 * 120.00027 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8485 0.0064 5 6 3.8936 -0.3874 0.0014 6 6 5.3232 -0.8641 0.0023 7 1 5.3541 -1.9207 -0.2633 8 6 5.9244 -0.6707 1.3960 9 7 6.0960 -0.0924 -0.9742 10 6 7.2083 -0.6203 -1.5221 11 8 7.5694 -1.7344 -1.2071 12 6 8.0036 0.1738 -2.5262 13 1 8.3505 1.0986 -2.0653 14 6 7.1195 0.5043 -3.7304 15 6 9.1896 -0.6367 -2.9818 16 1 9.1041 -1.7083 -3.0845 17 6 10.3841 -0.0100 -3.2673 18 7 11.3894 -0.7025 -3.7566 19 14 10.5744 1.8226 -2.9594 20 1 10.9536 2.0495 -1.5417 21 1 11.6324 2.3666 -3.8481 22 1 9.2882 2.5084 -3.2436 23 16 2.5061 -1.3904 0.0011 24 1 -0.3634 0.0007 1.0276 25 1 -0.3634 0.8897 -0.5146 26 1 -0.3633 -0.8904 -0.5133 27 1 6.9583 -1.0160 1.3967 28 1 5.8936 0.3859 1.6615 29 1 5.3495 -1.2449 2.1225 30 1 5.8070 0.7986 -1.2264 31 1 6.8441 -0.4174 -4.2429 32 1 7.6664 1.1517 -4.4158 33 1 6.2181 1.0142 -3.3903 34 1 12.2297 -0.2615 -3.9579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597503698.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:38 Heat of formation + Delta-G solvation = -9.174547 kcal Electronic energy + Delta-G solvation = -18146.444141 eV Core-core repulsion = 15205.410577 eV Total energy + Delta-G solvation = -2941.033563 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.46619 -40.75383 -37.02510 -35.64884 -33.99827 -33.38138 -31.59463 -29.41460 -27.24711 -26.60479 -25.12586 -23.53890 -21.35386 -20.67477 -20.12910 -19.11749 -18.14359 -17.18712 -16.90972 -16.36845 -15.98918 -15.64362 -15.02176 -15.01282 -14.51862 -14.30444 -14.21662 -13.97314 -13.70656 -13.49803 -13.17114 -13.11995 -12.95630 -12.61974 -12.60221 -12.15008 -11.77299 -11.57006 -11.29651 -11.27404 -10.86042 -10.76151 -10.67884 -10.44600 -10.15650 -8.27597 -6.33786 -0.67778 -0.19620 0.26855 1.36436 1.38132 1.41071 1.48246 1.82342 2.29310 2.35029 2.76039 3.08987 3.46451 3.70012 4.02232 4.06361 4.19037 4.30149 4.38860 4.61368 4.63557 4.69886 4.71412 4.74805 4.83397 5.08130 5.09845 5.12497 5.42590 5.45874 5.55093 6.23910 6.58623 6.79796 7.26938 7.40703 7.46234 8.89984 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.035317 B = 0.004442 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.628554 B = 6302.654989 C = 6503.790060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.017 4.017 3 N -0.298 5.298 4 N -0.272 5.272 5 C -0.047 4.047 6 C 0.225 3.775 7 H 0.102 0.898 8 C -0.151 4.151 9 N -0.720 5.720 10 C 0.527 3.473 11 O -0.571 6.571 12 C -0.009 4.009 13 H 0.070 0.930 14 C -0.127 4.127 15 C -0.504 4.504 16 H 0.028 0.972 17 C 0.010 3.990 18 N -0.949 5.949 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.284 1.284 22 H -0.229 1.229 23 S 0.245 5.755 24 H 0.111 0.889 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.411 0.589 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.716 2.617 9.634 26.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.295 4.295 3 N -0.137 5.137 4 N -0.110 5.110 5 C -0.327 4.327 6 C 0.117 3.883 7 H 0.120 0.880 8 C -0.211 4.211 9 N -0.375 5.375 10 C 0.315 3.685 11 O -0.448 6.448 12 C -0.031 4.031 13 H 0.088 0.912 14 C -0.185 4.185 15 C -0.543 4.543 16 H 0.047 0.953 17 C -0.187 4.187 18 N -0.588 5.588 19 Si 0.764 3.236 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.152 1.152 23 S 0.490 5.510 24 H 0.129 0.871 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.248 0.752 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.251 2.164 9.790 26.242 hybrid contribution 0.855 0.863 -0.183 1.229 sum -23.396 3.027 9.607 25.472 Atomic orbital electron populations 1.20673 0.80815 1.06180 1.05994 1.30015 1.06141 0.91670 1.01708 1.71455 0.96799 1.28283 1.17114 1.71335 1.07398 1.17825 1.14463 1.29125 1.03476 0.93846 1.06249 1.19274 0.81315 0.96482 0.91273 0.88024 1.22133 1.01579 1.03360 0.94030 1.46125 1.26531 1.20520 1.44321 1.21461 0.79665 0.86652 0.80699 1.90568 1.69383 1.21946 1.62910 1.19336 0.94425 0.96207 0.93099 0.91244 1.21825 0.98266 1.00694 0.97707 1.20843 0.95270 0.94042 1.44121 0.95336 1.25997 0.94933 1.03680 0.94068 1.70058 1.04491 1.38901 1.45395 0.85830 0.79739 0.79317 0.78719 1.19386 1.20950 1.15207 1.83516 0.94526 1.09574 1.63428 0.87093 0.88366 0.87186 0.92241 0.91483 0.89109 0.75247 0.93971 0.92345 0.91652 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.48 71.23 0.75 0.18 16 2 C -0.02 -0.29 7.53 88.46 0.67 0.37 16 3 N -0.30 -7.49 11.66 -50.85 -0.59 -8.08 16 4 N -0.27 -7.51 11.33 -50.85 -0.58 -8.08 16 5 C -0.05 -1.16 6.33 88.46 0.56 -0.60 16 6 C 0.23 6.36 3.09 44.25 0.14 6.50 16 7 H 0.10 2.98 7.58 -2.39 -0.02 2.97 16 8 C -0.15 -3.90 9.47 71.98 0.68 -3.22 16 9 N -0.72 -24.18 4.93 -446.10 -2.20 -26.38 16 10 C 0.53 23.16 7.11 87.66 0.62 23.78 16 11 O -0.57 -29.72 15.43 -3.04 -0.05 -29.77 16 12 C -0.01 -0.41 2.30 -12.28 -0.03 -0.44 16 13 H 0.07 3.04 5.29 -2.39 -0.01 3.02 16 14 C -0.13 -4.97 9.12 71.98 0.66 -4.32 16 15 C -0.50 -29.93 8.36 25.60 0.21 -29.72 16 16 H 0.03 1.97 7.61 -2.91 -0.02 1.94 16 17 C 0.01 0.60 5.47 84.66 0.46 1.06 16 18 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 19 Si 0.94 43.12 26.99 68.60 1.85 44.98 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 22 H -0.23 -9.16 6.82 99.48 0.68 -8.49 16 23 S 0.24 4.04 23.04 -56.49 -1.30 2.74 16 24 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.41 12.51 7.69 -92.71 -0.71 11.80 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.06 2.04 7.43 -2.39 -0.02 2.03 16 34 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -78.29 306.68 2.54 -75.76 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.38 Total: 15.56 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 4.72 Total: -6.40 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -3.07 Total: -102.87 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.05 Total: -29.77 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.85 Total: 44.98 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.30 Total: 2.74 kcal Total: -78.29 2.54 -75.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597503698.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.583 kcal (2) G-P(sol) polarization free energy of solvation -78.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds