Wall clock time and date at job start Mon Mar 30 2020 04:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47500 * 2 1 4 4 N 1.29414 * 125.70010 * 90.02073 * 3 2 1 5 5 N 1.26396 * 116.47623 * 179.73746 * 4 3 2 6 6 C 1.29409 * 116.47502 * 359.97438 * 5 4 3 7 7 C 1.50707 * 125.69372 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.46949 * 89.97852 * 7 6 5 9 9 C 1.34772 * 120.00003 * 180.02562 * 8 7 6 10 10 O 1.21284 * 120.00336 * 359.97438 * 9 8 7 11 11 C 1.50705 * 119.99867 * 179.97438 * 9 8 7 12 12 H 1.08992 * 109.47288 * 60.00147 * 11 9 8 13 13 C 1.53000 * 109.47244 * 299.99926 * 11 9 8 14 14 C 1.50707 * 109.46813 * 179.97438 * 11 9 8 15 15 H 1.07995 * 119.99935 * 359.97438 * 14 11 9 16 16 C 1.37880 * 119.99596 * 180.02562 * 14 11 9 17 17 N 1.31508 * 120.00187 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99744 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47109 * 89.99581 * 18 16 14 20 20 H 1.48501 * 109.46980 * 209.99909 * 18 16 14 21 21 H 1.48503 * 109.47088 * 329.99991 * 18 16 14 22 22 S 1.71215 * 108.61179 * 0.02562 * 6 5 4 23 23 H 1.08994 * 109.46926 * 300.00592 * 1 2 3 24 24 H 1.09001 * 109.46910 * 60.00302 * 1 2 3 25 25 H 1.08996 * 109.47439 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47102 * 239.99217 * 2 1 3 27 27 H 1.08996 * 109.46894 * 120.00188 * 2 1 3 28 28 H 1.09000 * 109.47136 * 209.97649 * 7 6 5 29 29 H 1.09001 * 109.46989 * 329.97993 * 7 6 5 30 30 H 0.96998 * 120.00050 * 359.97438 * 8 7 6 31 31 H 1.08992 * 109.47043 * 59.99920 * 13 11 9 32 32 H 1.08995 * 109.47008 * 180.02562 * 13 11 9 33 33 H 1.09007 * 109.46703 * 300.00067 * 13 11 9 34 34 H 0.96996 * 120.00176 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2846 2.1326 1.0509 5 7 2.7053 3.3071 0.8483 6 6 2.8378 3.6673 -0.3875 7 6 3.3211 5.0128 -0.8643 8 7 4.7781 4.9831 -1.0146 9 6 5.4350 6.0832 -1.4326 10 8 4.8199 7.0977 -1.6847 11 6 6.9338 6.0528 -1.5867 12 1 7.2088 5.2895 -2.3145 13 6 7.5787 5.7273 -0.2380 14 6 7.4171 7.3982 -2.0636 15 1 6.7097 8.1954 -2.2380 16 6 8.7624 7.6111 -2.2781 17 7 9.6237 6.6402 -2.0662 18 14 9.3616 9.2790 -2.8685 19 1 9.6660 10.1388 -1.6967 20 1 10.5889 9.1031 -3.6858 21 1 8.3059 9.9209 -3.6925 22 16 2.3723 2.3602 -1.3906 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5140 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.8614 5.2445 -1.8250 29 1 3.0464 5.7763 -0.1364 30 1 5.2701 4.1719 -0.8127 31 1 7.2291 4.7542 0.1065 32 1 8.6627 5.7058 -0.3494 33 1 7.3036 6.4907 0.4899 34 1 10.5702 6.7901 -2.2168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597669815.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:13 Heat of formation + Delta-G solvation = 12.207107 kcal Electronic energy + Delta-G solvation = -17635.923815 eV Core-core repulsion = 14695.817430 eV Total energy + Delta-G solvation = -2940.106385 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.51096 -38.88466 -35.36222 -34.20283 -33.75667 -31.21514 -30.17764 -27.83778 -25.37723 -25.12080 -23.51441 -22.31238 -20.05719 -19.51327 -19.42591 -16.72906 -16.23999 -16.01715 -15.42179 -15.04149 -14.71232 -14.59442 -14.31009 -13.83574 -13.19036 -13.09021 -12.90813 -12.75719 -12.32820 -12.11397 -11.67564 -11.50205 -11.02804 -10.75341 -10.68228 -10.61533 -10.38915 -10.27336 -10.05846 -9.96481 -9.90367 -8.99162 -8.68458 -8.63974 -8.35042 -6.04051 -4.07535 0.15218 0.65846 1.14680 2.32127 3.33979 3.39697 3.46001 3.61330 3.62992 3.89783 4.22287 4.47198 4.48249 4.72263 4.84227 4.91732 5.27615 5.29300 5.36039 5.48725 5.54404 5.62509 5.72227 6.16359 6.61596 6.80856 6.82707 6.93000 7.45125 7.74038 7.94179 8.09087 8.35093 8.36709 9.01254 9.11828 9.58050 11.03588 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.049639 B = 0.003523 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.934036 B = 7945.152626 C = 8090.902641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.043 4.043 3 C -0.020 4.020 4 N -0.261 5.261 5 N -0.242 5.242 6 C -0.028 4.028 7 C 0.202 3.798 8 N -0.743 5.743 9 C 0.524 3.476 10 O -0.541 6.541 11 C 0.032 3.968 12 H 0.054 0.946 13 C -0.133 4.133 14 C -0.502 4.502 15 H 0.075 0.925 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.901 3.099 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.272 1.272 22 S 0.187 5.813 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.398 0.602 31 H 0.011 0.989 32 H 0.094 0.906 33 H 0.032 0.968 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.290 -15.150 1.156 21.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.084 4.084 3 C -0.298 4.298 4 N -0.098 5.098 5 N -0.081 5.081 6 C -0.307 4.307 7 C 0.074 3.926 8 N -0.399 5.399 9 C 0.314 3.686 10 O -0.416 6.416 11 C 0.011 3.989 12 H 0.072 0.928 13 C -0.191 4.191 14 C -0.540 4.540 15 H 0.093 0.907 16 C -0.142 4.142 17 N -0.536 5.536 18 Si 0.729 3.271 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.197 1.197 22 S 0.431 5.569 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.232 0.768 31 H 0.030 0.970 32 H 0.113 0.887 33 H 0.052 0.948 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.522 -14.336 1.299 21.170 hybrid contribution 0.610 0.414 -0.002 0.738 sum -14.912 -13.921 1.297 20.442 Atomic orbital electron populations 1.21792 0.93118 1.02917 1.02871 1.20176 0.96939 0.86470 1.04864 1.29356 1.04023 1.04263 0.92200 1.71487 1.12675 0.98863 1.26818 1.71504 1.12365 1.07184 1.17010 1.29324 1.05184 1.03546 0.92637 1.19559 0.83652 0.87756 1.01649 1.46353 1.04942 1.16632 1.72011 1.22093 0.92173 0.80962 0.73355 1.90548 1.69828 1.31769 1.49429 1.18888 0.83691 1.00136 0.96196 0.92843 1.21756 1.05118 0.96182 0.96078 1.21142 0.92524 0.96643 1.43735 0.90687 1.24952 0.96649 0.97203 0.95420 1.69867 1.02374 1.31864 1.49480 0.86438 0.78042 0.83871 0.78788 1.20644 1.21300 1.19713 1.83799 1.56639 1.05108 1.11384 0.91799 0.92240 0.90985 0.89131 0.88268 0.89364 0.88525 0.76777 0.96956 0.88745 0.94837 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.90 37.16 0.37 -0.46 16 2 C -0.04 -0.29 6.54 -27.88 -0.18 -0.47 16 3 C -0.02 -0.21 6.78 -13.30 -0.09 -0.30 16 4 N -0.26 -3.65 11.66 32.58 0.38 -3.27 16 5 N -0.24 -3.71 11.66 32.58 0.38 -3.34 16 6 C -0.03 -0.37 6.90 -13.30 -0.09 -0.46 16 7 C 0.20 2.99 6.27 -5.19 -0.03 2.96 16 8 N -0.74 -12.91 5.44 -61.47 -0.33 -13.24 16 9 C 0.52 11.74 7.15 -10.99 -0.08 11.66 16 10 O -0.54 -13.74 15.46 5.55 0.09 -13.65 16 11 C 0.03 0.79 2.64 -92.92 -0.25 0.55 16 12 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 13 C -0.13 -3.10 8.87 37.16 0.33 -2.77 16 14 C -0.50 -14.15 8.38 -34.44 -0.29 -14.44 16 15 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 16 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 17 N -0.90 -25.10 11.32 55.43 0.63 -24.47 16 18 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 S 0.19 1.86 23.04 -107.50 -2.48 -0.62 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 30 H 0.40 6.30 7.88 -40.82 -0.32 5.98 16 31 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 32 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 308.00 15.07 4.64 4.64 Total: -1.00 -32.36 308.00 -6.45 -38.81 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -4.32 Total: 0.63 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.41 Total: -2.21 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 1.05 Total: -44.32 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.48 Total: -0.62 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.36 -6.45 -38.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597669815.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.014 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds