Wall clock time and date at job start Mon Mar 30 2020 04:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47500 * 2 1 4 4 N 1.29414 * 125.70010 * 90.02073 * 3 2 1 5 5 N 1.26396 * 116.47623 * 179.73746 * 4 3 2 6 6 C 1.29409 * 116.47502 * 359.97438 * 5 4 3 7 7 C 1.50707 * 125.69372 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.46949 * 89.97852 * 7 6 5 9 9 C 1.34772 * 120.00003 * 180.02562 * 8 7 6 10 10 O 1.21284 * 120.00336 * 359.97438 * 9 8 7 11 11 C 1.50705 * 119.99867 * 179.97438 * 9 8 7 12 12 H 1.08992 * 109.47288 * 60.00147 * 11 9 8 13 13 C 1.53000 * 109.47244 * 299.99926 * 11 9 8 14 14 C 1.50707 * 109.46813 * 179.97438 * 11 9 8 15 15 H 1.07995 * 119.99935 * 359.97438 * 14 11 9 16 16 C 1.37880 * 119.99596 * 180.02562 * 14 11 9 17 17 N 1.31508 * 120.00187 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99744 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47109 * 89.99581 * 18 16 14 20 20 H 1.48501 * 109.46980 * 209.99909 * 18 16 14 21 21 H 1.48503 * 109.47088 * 329.99991 * 18 16 14 22 22 S 1.71215 * 108.61179 * 0.02562 * 6 5 4 23 23 H 1.08994 * 109.46926 * 300.00592 * 1 2 3 24 24 H 1.09001 * 109.46910 * 60.00302 * 1 2 3 25 25 H 1.08996 * 109.47439 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47102 * 239.99217 * 2 1 3 27 27 H 1.08996 * 109.46894 * 120.00188 * 2 1 3 28 28 H 1.09000 * 109.47136 * 209.97649 * 7 6 5 29 29 H 1.09001 * 109.46989 * 329.97993 * 7 6 5 30 30 H 0.96998 * 120.00050 * 359.97438 * 8 7 6 31 31 H 1.08992 * 109.47043 * 59.99920 * 13 11 9 32 32 H 1.08995 * 109.47008 * 180.02562 * 13 11 9 33 33 H 1.09007 * 109.46703 * 300.00067 * 13 11 9 34 34 H 0.96996 * 120.00176 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2846 2.1326 1.0509 5 7 2.7053 3.3071 0.8483 6 6 2.8378 3.6673 -0.3875 7 6 3.3211 5.0128 -0.8643 8 7 4.7781 4.9831 -1.0146 9 6 5.4350 6.0832 -1.4326 10 8 4.8199 7.0977 -1.6847 11 6 6.9338 6.0528 -1.5867 12 1 7.2088 5.2895 -2.3145 13 6 7.5787 5.7273 -0.2380 14 6 7.4171 7.3982 -2.0636 15 1 6.7097 8.1954 -2.2380 16 6 8.7624 7.6111 -2.2781 17 7 9.6237 6.6402 -2.0662 18 14 9.3616 9.2790 -2.8685 19 1 9.6660 10.1388 -1.6967 20 1 10.5889 9.1031 -3.6858 21 1 8.3059 9.9209 -3.6925 22 16 2.3723 2.3602 -1.3906 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5140 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.8614 5.2445 -1.8250 29 1 3.0464 5.7763 -0.1364 30 1 5.2701 4.1719 -0.8127 31 1 7.2291 4.7542 0.1065 32 1 8.6627 5.7058 -0.3494 33 1 7.3036 6.4907 0.4899 34 1 10.5702 6.7901 -2.2168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597669815.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:12 Heat of formation + Delta-G solvation = -10.781984 kcal Electronic energy + Delta-G solvation = -17636.920697 eV Core-core repulsion = 14695.817430 eV Total energy + Delta-G solvation = -2941.103267 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.48797 -40.61374 -36.51465 -35.78089 -35.19936 -32.83366 -31.60052 -28.88860 -27.21351 -26.40026 -24.43661 -23.88904 -21.35414 -20.80443 -20.42517 -18.43866 -18.02511 -17.33902 -16.63853 -16.36759 -16.32038 -15.87716 -15.27880 -14.98087 -14.68294 -14.48631 -14.07070 -13.97018 -13.55408 -13.40823 -12.97763 -12.70943 -12.64647 -12.60155 -12.23071 -12.17916 -12.01488 -11.53552 -11.27763 -11.09402 -11.03531 -10.74310 -10.59304 -10.32259 -10.16136 -8.15014 -6.25551 -0.75417 -0.20897 0.24618 1.32745 1.42123 1.43238 1.54794 1.84577 2.31004 2.49867 2.79549 3.15029 3.36087 3.72431 3.99127 4.24055 4.25067 4.30962 4.42268 4.53179 4.72628 4.74430 4.91863 4.97385 4.99430 5.04704 5.30260 5.33218 5.47502 5.73513 5.90879 6.17977 6.59340 6.83739 7.35482 7.41276 7.46014 8.91005 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.049639 B = 0.003523 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.934036 B = 7945.152626 C = 8090.902641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C -0.013 4.013 4 N -0.297 5.297 5 N -0.272 5.272 6 C -0.055 4.055 7 C 0.205 3.795 8 N -0.724 5.724 9 C 0.529 3.471 10 O -0.577 6.577 11 C 0.027 3.973 12 H 0.047 0.953 13 C -0.121 4.121 14 C -0.529 4.529 15 H 0.052 0.948 16 C 0.020 3.980 17 N -0.912 5.912 18 Si 0.956 3.044 19 H -0.276 1.276 20 H -0.275 1.275 21 H -0.276 1.276 22 S 0.258 5.742 23 H 0.047 0.953 24 H 0.062 0.938 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.408 0.592 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.022 0.978 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.008 -16.929 0.473 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.291 4.291 4 N -0.135 5.135 5 N -0.111 5.111 6 C -0.334 4.334 7 C 0.078 3.922 8 N -0.379 5.379 9 C 0.318 3.682 10 O -0.455 6.455 11 C 0.005 3.995 12 H 0.065 0.935 13 C -0.179 4.179 14 C -0.568 4.568 15 H 0.070 0.930 16 C -0.180 4.180 17 N -0.551 5.551 18 Si 0.782 3.218 19 H -0.202 1.202 20 H -0.200 1.200 21 H -0.201 1.201 22 S 0.503 5.497 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.113 0.887 26 H 0.137 0.863 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.103 0.897 30 H 0.244 0.756 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.041 0.959 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.247 -16.167 0.626 22.929 hybrid contribution 0.754 0.815 0.189 1.126 sum -15.493 -15.352 0.815 21.826 Atomic orbital electron populations 1.21801 0.92161 1.04268 1.02252 1.20479 0.97599 0.84210 1.06484 1.30069 1.01685 1.05434 0.91945 1.71474 1.14678 0.98961 1.28392 1.71469 1.13056 1.08241 1.18381 1.28998 1.06814 1.04094 0.93444 1.19542 0.81580 0.88897 1.02170 1.46000 1.06426 1.15431 1.70028 1.21545 0.91417 0.81577 0.73615 1.90528 1.70229 1.33355 1.51419 1.18811 0.85742 0.98369 0.96533 0.93534 1.21576 1.03555 0.97660 0.95125 1.21298 0.92740 0.97761 1.44957 0.92981 1.25602 0.96640 1.00340 0.95375 1.69944 1.02617 1.33099 1.49442 0.85581 0.77652 0.80142 0.78434 1.20181 1.20011 1.20115 1.83514 1.54724 1.02303 1.09152 0.93425 0.91869 0.88693 0.86341 0.87799 0.87952 0.89721 0.75646 0.93569 0.90878 0.95867 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.90 71.98 0.71 -0.52 16 2 C -0.05 -0.47 6.54 29.85 0.20 -0.28 16 3 C -0.01 -0.25 6.78 88.46 0.60 0.35 16 4 N -0.30 -8.03 11.66 -50.85 -0.59 -8.62 16 5 N -0.27 -8.21 11.66 -50.85 -0.59 -8.80 16 6 C -0.05 -1.40 6.90 88.47 0.61 -0.79 16 7 C 0.21 5.96 6.27 85.64 0.54 6.50 16 8 N -0.72 -24.69 5.44 -466.77 -2.54 -27.23 16 9 C 0.53 23.84 7.15 87.66 0.63 24.46 16 10 O -0.58 -29.84 15.46 -3.04 -0.05 -29.89 16 11 C 0.03 1.33 2.64 -12.28 -0.03 1.30 16 12 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 13 C -0.12 -5.62 8.87 71.98 0.64 -4.98 16 14 C -0.53 -30.39 8.38 25.60 0.21 -30.18 16 15 H 0.05 3.18 6.75 -2.91 -0.02 3.16 16 16 C 0.02 1.09 5.30 84.66 0.45 1.54 16 17 N -0.91 -51.02 11.32 21.45 0.24 -50.77 16 18 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 22 S 0.26 4.48 23.04 -56.49 -1.30 3.18 16 23 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.41 12.37 7.88 -92.71 -0.73 11.64 16 31 H 0.05 1.77 7.56 -2.39 -0.02 1.75 16 32 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 33 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -70.64 308.00 2.14 -68.50 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.39 Total: 9.50 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 4.55 Total: -2.59 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -3.48 Total: -95.42 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.05 Total: -29.89 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.30 Total: 3.18 kcal Total: -70.64 2.14 -68.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597669815.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.716 kcal (2) G-P(sol) polarization free energy of solvation -70.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds