Wall clock time and date at job start Mon Mar 30 2020 06:01:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 H 1.09001 * 109.46944 * 2 1
4 4 C 1.50700 * 109.47546 * 120.00402 * 2 1 3
5 5 H 1.07993 * 119.99963 * 113.96000 * 4 2 1
6 6 C 1.37883 * 119.99667 * 293.96785 * 4 2 1
7 7 N 1.31507 * 119.99854 * 154.76721 * 6 4 2
8 8 Si 1.86798 * 120.00168 * 334.76784 * 6 4 2
9 9 H 1.48495 * 109.47091 * 180.02562 * 8 6 4
10 10 H 1.48495 * 109.47101 * 300.00217 * 8 6 4
11 11 H 1.48507 * 109.47128 * 59.99909 * 8 6 4
12 12 C 1.50700 * 109.47039 * 240.00430 * 2 1 3
13 13 O 1.21281 * 120.00114 * 255.08638 * 12 2 1
14 14 N 1.34777 * 120.00151 * 75.09128 * 12 2 1
15 15 C 1.46379 * 119.64558 * 6.51940 * 14 12 2
16 16 C 1.52728 * 109.76891 * 245.08582 * 15 14 12
17 17 S 1.81742 * 108.84279 * 302.52116 * 16 15 14
18 18 C 1.81746 * 102.30845 * 54.42291 * 17 16 15
19 19 C 1.46379 * 119.64935 * 186.79139 * 14 12 2
20 20 H 1.08999 * 109.46647 * 234.91629 * 19 14 12
21 21 C 1.53001 * 109.46698 * 354.90731 * 19 14 12
22 22 C 1.53005 * 117.50018 * 258.64553 * 21 19 14
23 23 C 1.53000 * 59.99986 * 252.51167 * 22 21 19
24 24 H 1.09006 * 109.47181 * 52.46207 * 1 2 3
25 25 H 1.08995 * 109.47317 * 172.46166 * 1 2 3
26 26 H 1.09002 * 109.47163 * 292.46340 * 1 2 3
27 27 H 0.97007 * 120.00053 * 354.95877 * 7 6 4
28 28 H 1.08992 * 109.47004 * 5.08955 * 15 14 12
29 29 H 1.08998 * 109.46800 * 125.08424 * 15 14 12
30 30 H 1.09000 * 109.66122 * 182.65707 * 16 15 14
31 31 H 1.09003 * 109.58488 * 62.33801 * 16 15 14
32 32 H 1.08993 * 109.58668 * 185.67022 * 18 17 16
33 33 H 1.08996 * 109.69140 * 65.31964 * 18 17 16
34 34 H 1.09002 * 115.54862 * 44.34838 * 21 19 14
35 35 H 1.08994 * 117.49609 * 0.02562 * 22 21 19
36 36 H 1.08999 * 117.49768 * 145.01816 * 22 21 19
37 37 H 1.09000 * 117.49649 * 252.51430 * 23 22 21
38 38 H 1.08991 * 117.50259 * 107.48696 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0324 -0.7105 1.2304
5 1 2.5705 -1.6418 1.1342
6 6 1.8049 -0.1714 2.4789
7 7 1.7728 -0.9524 3.5364
8 14 1.5421 1.6683 2.6682
9 1 1.3201 1.9918 4.1004
10 1 2.7421 2.3927 2.1779
11 1 0.3559 2.0830 1.8768
12 6 2.0322 -0.7103 -1.2305
13 8 2.4892 -1.8301 -1.1403
14 7 1.9738 -0.1012 -2.4314
15 6 1.5558 1.2993 -2.5132
16 6 0.2358 1.4007 -3.2748
17 16 0.4514 0.6667 -4.9234
18 6 1.0833 -0.9913 -4.5296
19 6 2.3231 -0.8488 -3.6404
20 1 3.1016 -0.3150 -4.1853
21 6 2.8338 -2.2376 -3.2513
22 6 4.3471 -2.4632 -3.2646
23 6 3.4707 -3.0898 -4.3510
24 1 -0.3634 0.6262 -0.8149
25 1 -0.3634 -1.0187 -0.1348
26 1 -0.3633 0.3927 0.9497
27 1 1.8361 -1.9147 3.4308
28 1 1.4236 1.6983 -1.5076
29 1 2.3189 1.8762 -3.0356
30 1 -0.0498 2.4478 -3.3758
31 1 -0.5409 0.8608 -2.7333
32 1 1.3519 -1.5082 -5.4508
33 1 0.3182 -1.5600 -4.0012
34 1 2.2544 -2.7542 -2.4861
35 1 4.9788 -1.6221 -3.5501
36 1 4.7634 -3.1283 -2.5080
37 1 3.3104 -4.1671 -4.3091
38 1 3.5257 -2.6610 -5.3515
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597727576.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:01:56
Heat of formation + Delta-G solvation = 15.763022 kcal
Electronic energy + Delta-G solvation = -19778.996885 eV
Core-core repulsion = 16942.585039 eV
Total energy + Delta-G solvation = -2836.411846 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 269.119 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.19628 -36.93778 -35.79261 -33.86201 -31.74364 -30.84518 -29.67858 -25.04865
-24.49849 -23.41310 -22.09564 -21.87787 -20.69635 -18.54360 -17.39875 -16.58796
-16.18008 -15.99548 -14.94079 -14.69917 -14.50448 -14.00699 -13.90619 -13.52354
-13.32493 -12.89811 -12.60313 -12.44635 -12.08116 -11.78766 -11.70715 -11.46428
-11.26785 -11.15844 -10.77097 -10.60202 -10.32961 -10.14555 -10.04436 -9.94537
-9.73513 -9.05103 -8.55792 -8.20921 -7.92569 -7.69821 -6.53148 -4.07679
1.67965 2.41760 3.23793 3.29736 3.35646 3.38144 3.54206 4.14607
4.44889 4.69165 4.77411 4.92222 5.02011 5.07982 5.13487 5.22409
5.30951 5.44195 5.48663 5.57492 5.64546 5.71195 5.77890 5.82636
5.96430 6.14392 6.15831 6.35003 6.39107 6.44513 6.60603 6.79598
7.04020 7.17605 7.67043 8.06975 8.41273 8.97747 9.00339 9.57177
10.85773
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.020632 B = 0.007409 C = 0.005862
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1356.763516 B = 3778.239035 C = 4774.985136
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.007 3.993
3 H 0.038 0.962
4 C -0.599 4.599
5 H 0.075 0.925
6 C 0.039 3.961
7 N -0.892 5.892
8 Si 1.029 2.971
9 H -0.283 1.283
10 H -0.283 1.283
11 H -0.278 1.278
12 C 0.531 3.469
13 O -0.511 6.511
14 N -0.627 5.627
15 C 0.106 3.894
16 C -0.101 4.101
17 S -0.273 6.273
18 C -0.086 4.086
19 C 0.179 3.821
20 H 0.074 0.926
21 C -0.140 4.140
22 C -0.162 4.162
23 C -0.203 4.203
24 H 0.027 0.973
25 H 0.046 0.954
26 H 0.061 0.939
27 H 0.272 0.728
28 H 0.107 0.893
29 H 0.077 0.923
30 H 0.114 0.886
31 H 0.092 0.908
32 H 0.110 0.890
33 H 0.087 0.913
34 H 0.157 0.843
35 H 0.083 0.917
36 H 0.091 0.909
37 H 0.090 0.910
38 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.701 4.142 -15.823 16.444
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.015 4.015
3 H 0.056 0.944
4 C -0.637 4.637
5 H 0.093 0.907
6 C -0.168 4.168
7 N -0.525 5.525
8 Si 0.857 3.143
9 H -0.208 1.208
10 H -0.209 1.209
11 H -0.204 1.204
12 C 0.323 3.677
13 O -0.386 6.386
14 N -0.363 5.363
15 C -0.019 4.019
16 C -0.250 4.250
17 S -0.045 6.045
18 C -0.236 4.236
19 C 0.074 3.926
20 H 0.092 0.908
21 C -0.159 4.159
22 C -0.200 4.200
23 C -0.241 4.241
24 H 0.046 0.954
25 H 0.065 0.935
26 H 0.080 0.920
27 H 0.082 0.918
28 H 0.125 0.875
29 H 0.095 0.905
30 H 0.132 0.868
31 H 0.111 0.889
32 H 0.129 0.871
33 H 0.106 0.894
34 H 0.174 0.826
35 H 0.102 0.898
36 H 0.110 0.890
37 H 0.108 0.892
38 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -1.912 5.191 -15.631 16.581
hybrid contribution 0.452 -1.577 -0.131 1.646
sum -1.460 3.614 -15.762 16.236
Atomic orbital electron populations
1.22137 0.96915 1.00367 1.00290 1.19201 0.93571 0.96479 0.92249
0.94421 1.21839 1.41229 1.11052 0.89544 0.90708 1.25667 0.93330
1.05664 0.92097 1.70819 1.43031 1.06434 1.32181 0.84240 0.77056
0.76450 0.76568 1.20824 1.20892 1.20380 1.21580 0.75978 0.86478
0.83704 1.90430 1.44181 1.19758 1.84196 1.48203 1.69741 1.11760
1.06580 1.21686 0.94369 0.83080 1.02743 1.23894 1.01655 1.04453
0.94970 1.86672 1.86588 1.16952 1.14283 1.23870 1.00731 0.95267
1.03693 1.20733 0.94187 0.92086 0.85603 0.90831 1.23320 0.97514
0.95268 0.99776 1.22751 0.93539 1.02767 1.00907 1.23115 1.07185
0.99381 0.94436 0.95403 0.93482 0.92019 0.91805 0.87502 0.90457
0.86807 0.88946 0.87139 0.89423 0.82624 0.89842 0.89019 0.89165
0.89839
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.81 8.74 37.15 0.32 -2.48 16
2 C 0.01 0.15 1.38 -92.93 -0.13 0.02 16
3 H 0.04 0.81 5.03 -51.93 -0.26 0.55 16
4 C -0.60 -16.63 8.56 -34.44 -0.29 -16.92 16
5 H 0.07 2.36 7.08 -52.49 -0.37 1.99 16
6 C 0.04 1.09 5.15 -17.82 -0.09 1.00 16
7 N -0.89 -26.88 13.69 55.43 0.76 -26.12 16
8 Si 1.03 23.62 26.52 -169.99 -4.51 19.11 16
9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
11 H -0.28 -5.71 6.35 56.52 0.36 -5.35 16
12 C 0.53 11.12 6.77 -10.99 -0.07 11.04 16
13 O -0.51 -12.04 10.90 5.56 0.06 -11.98 16
14 N -0.63 -10.32 2.80 -166.32 -0.47 -10.78 16
15 C 0.11 1.43 5.46 -4.25 -0.02 1.41 16
16 C -0.10 -1.19 6.43 37.02 0.24 -0.95 16
17 S -0.27 -3.40 22.29 -107.50 -2.40 -5.80 16
18 C -0.09 -1.10 5.86 37.28 0.22 -0.88 16
19 C 0.18 2.63 2.86 -67.87 -0.19 2.43 16
20 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16
21 C -0.14 -2.22 3.25 -90.62 -0.29 -2.52 16
22 C -0.16 -2.49 9.95 -26.73 -0.27 -2.75 16
23 C -0.20 -2.65 10.05 -26.73 -0.27 -2.92 16
24 H 0.03 0.45 5.33 -51.93 -0.28 0.17 16
25 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16
26 H 0.06 1.31 5.77 -51.93 -0.30 1.01 16
27 H 0.27 8.27 8.73 -40.82 -0.36 7.91 16
28 H 0.11 1.49 5.00 -51.93 -0.26 1.23 16
29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16
30 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16
31 H 0.09 1.16 6.63 -51.93 -0.34 0.82 16
32 H 0.11 1.23 8.05 -51.93 -0.42 0.81 16
33 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16
34 H 0.16 3.03 5.45 -55.38 -0.30 2.72 16
35 H 0.08 1.21 8.12 -51.93 -0.42 0.79 16
36 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16
37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16
38 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16
LS Contribution 301.39 15.07 4.54 4.54
Total: -1.00 -30.09 301.39 -8.39 -38.47
By element:
Atomic # 1 Polarization: 11.59 SS G_CDS: -5.52 Total: 6.07 kcal
Atomic # 6 Polarization: -12.67 SS G_CDS: -0.85 Total: -13.52 kcal
Atomic # 7 Polarization: -37.19 SS G_CDS: 0.29 Total: -36.90 kcal
Atomic # 8 Polarization: -12.04 SS G_CDS: 0.06 Total: -11.98 kcal
Atomic # 14 Polarization: 23.62 SS G_CDS: -4.51 Total: 19.11 kcal
Atomic # 16 Polarization: -3.40 SS G_CDS: -2.40 Total: -5.80 kcal
Total LS contribution 4.54 Total: 4.54 kcal
Total: -30.09 -8.39 -38.47 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597727576.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.236 kcal
(2) G-P(sol) polarization free energy of solvation -30.087 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.149 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.763 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds