Wall clock time and date at job start Mon Mar 30 2020 06:01:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 H 1.09001 * 109.46944 * 2 1
4 4 C 1.50700 * 109.47546 * 120.00402 * 2 1 3
5 5 H 1.07993 * 119.99963 * 113.96000 * 4 2 1
6 6 C 1.37883 * 119.99667 * 293.96785 * 4 2 1
7 7 N 1.31507 * 119.99854 * 154.76721 * 6 4 2
8 8 Si 1.86798 * 120.00168 * 334.76784 * 6 4 2
9 9 H 1.48495 * 109.47091 * 180.02562 * 8 6 4
10 10 H 1.48495 * 109.47101 * 300.00217 * 8 6 4
11 11 H 1.48507 * 109.47128 * 59.99909 * 8 6 4
12 12 C 1.50700 * 109.47039 * 240.00430 * 2 1 3
13 13 O 1.21281 * 120.00114 * 255.08638 * 12 2 1
14 14 N 1.34777 * 120.00151 * 75.09128 * 12 2 1
15 15 C 1.46379 * 119.64558 * 6.51940 * 14 12 2
16 16 C 1.52728 * 109.76891 * 245.08582 * 15 14 12
17 17 S 1.81742 * 108.84279 * 302.52116 * 16 15 14
18 18 C 1.81746 * 102.30845 * 54.42291 * 17 16 15
19 19 C 1.46379 * 119.64935 * 186.79139 * 14 12 2
20 20 H 1.08999 * 109.46647 * 234.91629 * 19 14 12
21 21 C 1.53001 * 109.46698 * 354.90731 * 19 14 12
22 22 C 1.53005 * 117.50018 * 258.64553 * 21 19 14
23 23 C 1.53000 * 59.99986 * 252.51167 * 22 21 19
24 24 H 1.09006 * 109.47181 * 52.46207 * 1 2 3
25 25 H 1.08995 * 109.47317 * 172.46166 * 1 2 3
26 26 H 1.09002 * 109.47163 * 292.46340 * 1 2 3
27 27 H 0.97007 * 120.00053 * 354.95877 * 7 6 4
28 28 H 1.08992 * 109.47004 * 5.08955 * 15 14 12
29 29 H 1.08998 * 109.46800 * 125.08424 * 15 14 12
30 30 H 1.09000 * 109.66122 * 182.65707 * 16 15 14
31 31 H 1.09003 * 109.58488 * 62.33801 * 16 15 14
32 32 H 1.08993 * 109.58668 * 185.67022 * 18 17 16
33 33 H 1.08996 * 109.69140 * 65.31964 * 18 17 16
34 34 H 1.09002 * 115.54862 * 44.34838 * 21 19 14
35 35 H 1.08994 * 117.49609 * 0.02562 * 22 21 19
36 36 H 1.08999 * 117.49768 * 145.01816 * 22 21 19
37 37 H 1.09000 * 117.49649 * 252.51430 * 23 22 21
38 38 H 1.08991 * 117.50259 * 107.48696 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0324 -0.7105 1.2304
5 1 2.5705 -1.6418 1.1342
6 6 1.8049 -0.1714 2.4789
7 7 1.7728 -0.9524 3.5364
8 14 1.5421 1.6683 2.6682
9 1 1.3201 1.9918 4.1004
10 1 2.7421 2.3927 2.1779
11 1 0.3559 2.0830 1.8768
12 6 2.0322 -0.7103 -1.2305
13 8 2.4892 -1.8301 -1.1403
14 7 1.9738 -0.1012 -2.4314
15 6 1.5558 1.2993 -2.5132
16 6 0.2358 1.4007 -3.2748
17 16 0.4514 0.6667 -4.9234
18 6 1.0833 -0.9913 -4.5296
19 6 2.3231 -0.8488 -3.6404
20 1 3.1016 -0.3150 -4.1853
21 6 2.8338 -2.2376 -3.2513
22 6 4.3471 -2.4632 -3.2646
23 6 3.4707 -3.0898 -4.3510
24 1 -0.3634 0.6262 -0.8149
25 1 -0.3634 -1.0187 -0.1348
26 1 -0.3633 0.3927 0.9497
27 1 1.8361 -1.9147 3.4308
28 1 1.4236 1.6983 -1.5076
29 1 2.3189 1.8762 -3.0356
30 1 -0.0498 2.4478 -3.3758
31 1 -0.5409 0.8608 -2.7333
32 1 1.3519 -1.5082 -5.4508
33 1 0.3182 -1.5600 -4.0012
34 1 2.2544 -2.7542 -2.4861
35 1 4.9788 -1.6221 -3.5501
36 1 4.7634 -3.1283 -2.5080
37 1 3.3104 -4.1671 -4.3091
38 1 3.5257 -2.6610 -5.3515
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597727576.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:01:55
Heat of formation + Delta-G solvation = -3.145606 kcal
Electronic energy + Delta-G solvation = -19779.816824 eV
Core-core repulsion = 16942.585039 eV
Total energy + Delta-G solvation = -2837.231785 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 269.119 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.62213 -38.29242 -37.13124 -35.74735 -33.39287 -32.22135 -30.90121 -26.90085
-25.85426 -24.66357 -23.43526 -23.15919 -22.05340 -20.11732 -19.36883 -17.91215
-17.45414 -17.26597 -16.28046 -15.89643 -15.73985 -15.51025 -15.22390 -14.97745
-14.69462 -14.37139 -13.93695 -13.89495 -13.52077 -13.31214 -13.12225 -12.86071
-12.68760 -12.40119 -12.34827 -12.17888 -11.73474 -11.67299 -11.49245 -11.22846
-11.08626 -10.83175 -10.34195 -9.84459 -9.45356 -8.78408 -8.68241 -6.33151
0.72719 1.45344 1.47754 1.57067 1.73561 1.80101 1.97782 2.53950
2.96867 3.01254 3.51115 3.65990 3.87978 3.99276 4.02735 4.10900
4.16137 4.30204 4.30797 4.41992 4.47303 4.50717 4.60807 4.66666
4.72821 4.75628 4.82971 4.95586 4.98229 5.08593 5.23111 5.35811
5.47052 5.76499 5.87138 6.05351 6.46914 6.63022 7.40396 7.46449
8.58812
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.020632 B = 0.007409 C = 0.005862
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1356.763516 B = 3778.239035 C = 4774.985136
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.003 3.997
3 H 0.063 0.937
4 C -0.608 4.608
5 H 0.015 0.985
6 C -0.014 4.014
7 N -0.928 5.928
8 Si 1.075 2.925
9 H -0.291 1.291
10 H -0.260 1.260
11 H -0.229 1.229
12 C 0.524 3.476
13 O -0.552 6.552
14 N -0.619 5.619
15 C 0.097 3.903
16 C -0.097 4.097
17 S -0.264 6.264
18 C -0.082 4.082
19 C 0.182 3.818
20 H 0.089 0.911
21 C -0.156 4.156
22 C -0.179 4.179
23 C -0.167 4.167
24 H 0.074 0.926
25 H 0.026 0.974
26 H 0.054 0.946
27 H 0.250 0.750
28 H 0.107 0.893
29 H 0.100 0.900
30 H 0.147 0.853
31 H 0.085 0.915
32 H 0.131 0.869
33 H 0.073 0.927
34 H 0.115 0.885
35 H 0.094 0.906
36 H 0.067 0.933
37 H 0.095 0.905
38 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.668 7.446 -18.906 20.494
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.019 4.019
3 H 0.081 0.919
4 C -0.646 4.646
5 H 0.033 0.967
6 C -0.212 4.212
7 N -0.563 5.563
8 Si 0.893 3.107
9 H -0.218 1.218
10 H -0.185 1.185
11 H -0.153 1.153
12 C 0.315 3.685
13 O -0.430 6.430
14 N -0.353 5.353
15 C -0.027 4.027
16 C -0.246 4.246
17 S -0.036 6.036
18 C -0.231 4.231
19 C 0.077 3.923
20 H 0.107 0.893
21 C -0.176 4.176
22 C -0.217 4.217
23 C -0.205 4.205
24 H 0.093 0.907
25 H 0.045 0.955
26 H 0.073 0.927
27 H 0.059 0.941
28 H 0.125 0.875
29 H 0.118 0.882
30 H 0.164 0.836
31 H 0.104 0.896
32 H 0.149 0.851
33 H 0.092 0.908
34 H 0.132 0.868
35 H 0.112 0.888
36 H 0.085 0.915
37 H 0.113 0.887
38 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -2.893 8.508 -18.784 20.823
hybrid contribution 0.806 -2.718 0.776 2.939
sum -2.087 5.790 -18.008 19.031
Atomic orbital electron populations
1.21987 0.94915 1.00201 1.01721 1.19145 0.94970 0.96952 0.90821
0.91927 1.21923 1.40667 1.09335 0.92649 0.96652 1.27364 0.92178
1.10182 0.91509 1.70977 1.46469 1.05336 1.33473 0.83726 0.79793
0.70141 0.76999 1.21754 1.18520 1.15260 1.21323 0.76215 0.86003
0.84922 1.90488 1.45965 1.21378 1.85185 1.48112 1.68515 1.13007
1.05684 1.21996 0.96126 0.81092 1.03499 1.23927 1.00192 1.06320
0.94187 1.86712 1.86385 1.16030 1.14490 1.23788 0.99307 0.96124
1.03912 1.20839 0.95505 0.91009 0.84933 0.89280 1.22991 0.97153
0.96641 1.00780 1.22753 0.93559 1.03388 1.01953 1.23159 1.03270
0.99387 0.94648 0.90714 0.95498 0.92737 0.94139 0.87540 0.88152
0.83562 0.89608 0.85064 0.90812 0.86789 0.88772 0.91453 0.88691
0.86792
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.06 8.74 71.98 0.63 -4.43 16
2 C 0.00 0.13 1.38 -12.29 -0.02 0.11 16
3 H 0.06 2.49 5.03 -2.39 -0.01 2.48 16
4 C -0.61 -35.24 8.56 25.60 0.22 -35.02 16
5 H 0.02 1.04 7.08 -2.91 -0.02 1.02 16
6 C -0.01 -0.78 5.15 84.66 0.44 -0.35 16
7 N -0.93 -58.71 13.69 21.45 0.29 -58.41 16
8 Si 1.07 46.25 26.52 68.60 1.82 48.06 16
9 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16
10 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16
11 H -0.23 -8.10 6.35 99.48 0.63 -7.47 16
12 C 0.52 22.16 6.77 87.66 0.59 22.75 16
13 O -0.55 -27.63 10.90 -3.03 -0.03 -27.66 16
14 N -0.62 -19.22 2.80 -798.51 -2.23 -21.46 16
15 C 0.10 2.21 5.46 86.31 0.47 2.68 16
16 C -0.10 -1.84 6.43 71.89 0.46 -1.38 16
17 S -0.26 -5.51 22.29 -56.49 -1.26 -6.77 16
18 C -0.08 -1.86 5.86 72.06 0.42 -1.44 16
19 C 0.18 4.95 2.86 45.09 0.13 5.08 16
20 H 0.09 2.21 8.00 -2.39 -0.02 2.19 16
21 C -0.16 -4.98 3.25 -10.79 -0.04 -5.01 16
22 C -0.18 -5.53 9.95 30.60 0.30 -5.23 16
23 C -0.17 -4.08 10.05 30.60 0.31 -3.77 16
24 H 0.07 2.17 5.33 -2.38 -0.01 2.16 16
25 H 0.03 1.11 8.13 -2.39 -0.02 1.09 16
26 H 0.05 2.18 5.77 -2.39 -0.01 2.16 16
27 H 0.25 16.40 8.73 -92.70 -0.81 15.59 16
28 H 0.11 2.47 5.00 -2.39 -0.01 2.46 16
29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16
30 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16
31 H 0.09 1.78 6.63 -2.39 -0.02 1.76 16
32 H 0.13 2.43 8.05 -2.39 -0.02 2.41 16
33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16
34 H 0.11 4.72 5.45 -57.00 -0.31 4.41 16
35 H 0.09 2.65 8.12 -2.39 -0.02 2.63 16
36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16
37 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16
38 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16
Total: -1.00 -72.00 301.39 3.15 -68.84
By element:
Atomic # 1 Polarization: 22.75 SS G_CDS: 0.65 Total: 23.40 kcal
Atomic # 6 Polarization: -29.92 SS G_CDS: 3.92 Total: -26.00 kcal
Atomic # 7 Polarization: -77.93 SS G_CDS: -1.94 Total: -79.87 kcal
Atomic # 8 Polarization: -27.63 SS G_CDS: -0.03 Total: -27.66 kcal
Atomic # 14 Polarization: 46.25 SS G_CDS: 1.82 Total: 48.06 kcal
Atomic # 16 Polarization: -5.51 SS G_CDS: -1.26 Total: -6.77 kcal
Total: -72.00 3.15 -68.84 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597727576.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.697 kcal
(2) G-P(sol) polarization free energy of solvation -71.997 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.299 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.843 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.146 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds