Wall clock time and date at job start Mon Mar 30 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.46944 * 2 1 4 4 C 1.50700 * 109.47546 * 120.00402 * 2 1 3 5 5 H 1.07993 * 119.99963 * 113.96000 * 4 2 1 6 6 C 1.37883 * 119.99667 * 293.96785 * 4 2 1 7 7 N 1.31507 * 119.99854 * 154.76721 * 6 4 2 8 8 Si 1.86798 * 120.00168 * 334.76784 * 6 4 2 9 9 H 1.48495 * 109.47091 * 180.02562 * 8 6 4 10 10 H 1.48495 * 109.47101 * 300.00217 * 8 6 4 11 11 H 1.48507 * 109.47128 * 59.99909 * 8 6 4 12 12 C 1.50700 * 109.47039 * 240.00430 * 2 1 3 13 13 O 1.21281 * 120.00114 * 255.08638 * 12 2 1 14 14 N 1.34777 * 120.00151 * 75.09128 * 12 2 1 15 15 C 1.46379 * 119.64558 * 6.51940 * 14 12 2 16 16 C 1.52728 * 109.76891 * 245.08582 * 15 14 12 17 17 S 1.81742 * 108.84279 * 302.52116 * 16 15 14 18 18 C 1.81746 * 102.30845 * 54.42291 * 17 16 15 19 19 C 1.46379 * 119.64935 * 186.79139 * 14 12 2 20 20 H 1.08999 * 109.46647 * 234.91629 * 19 14 12 21 21 C 1.53001 * 109.46698 * 354.90731 * 19 14 12 22 22 C 1.53005 * 117.50018 * 258.64553 * 21 19 14 23 23 C 1.53000 * 59.99986 * 252.51167 * 22 21 19 24 24 H 1.09006 * 109.47181 * 52.46207 * 1 2 3 25 25 H 1.08995 * 109.47317 * 172.46166 * 1 2 3 26 26 H 1.09002 * 109.47163 * 292.46340 * 1 2 3 27 27 H 0.97007 * 120.00053 * 354.95877 * 7 6 4 28 28 H 1.08992 * 109.47004 * 5.08955 * 15 14 12 29 29 H 1.08998 * 109.46800 * 125.08424 * 15 14 12 30 30 H 1.09000 * 109.66122 * 182.65707 * 16 15 14 31 31 H 1.09003 * 109.58488 * 62.33801 * 16 15 14 32 32 H 1.08993 * 109.58668 * 185.67022 * 18 17 16 33 33 H 1.08996 * 109.69140 * 65.31964 * 18 17 16 34 34 H 1.09002 * 115.54862 * 44.34838 * 21 19 14 35 35 H 1.08994 * 117.49609 * 0.02562 * 22 21 19 36 36 H 1.08999 * 117.49768 * 145.01816 * 22 21 19 37 37 H 1.09000 * 117.49649 * 252.51430 * 23 22 21 38 38 H 1.08991 * 117.50259 * 107.48696 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5705 -1.6418 1.1342 6 6 1.8049 -0.1714 2.4789 7 7 1.7728 -0.9524 3.5364 8 14 1.5421 1.6683 2.6682 9 1 1.3201 1.9918 4.1004 10 1 2.7421 2.3927 2.1779 11 1 0.3559 2.0830 1.8768 12 6 2.0322 -0.7103 -1.2305 13 8 2.4892 -1.8301 -1.1403 14 7 1.9738 -0.1012 -2.4314 15 6 1.5558 1.2993 -2.5132 16 6 0.2358 1.4007 -3.2748 17 16 0.4514 0.6667 -4.9234 18 6 1.0833 -0.9913 -4.5296 19 6 2.3231 -0.8488 -3.6404 20 1 3.1016 -0.3150 -4.1853 21 6 2.8338 -2.2376 -3.2513 22 6 4.3471 -2.4632 -3.2646 23 6 3.4707 -3.0898 -4.3510 24 1 -0.3634 0.6262 -0.8149 25 1 -0.3634 -1.0187 -0.1348 26 1 -0.3633 0.3927 0.9497 27 1 1.8361 -1.9147 3.4308 28 1 1.4236 1.6983 -1.5076 29 1 2.3189 1.8762 -3.0356 30 1 -0.0498 2.4478 -3.3758 31 1 -0.5409 0.8608 -2.7333 32 1 1.3519 -1.5082 -5.4508 33 1 0.3182 -1.5600 -4.0012 34 1 2.2544 -2.7542 -2.4861 35 1 4.9788 -1.6221 -3.5501 36 1 4.7634 -3.1283 -2.5080 37 1 3.3104 -4.1671 -4.3091 38 1 3.5257 -2.6610 -5.3515 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597727576.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:55 Heat of formation + Delta-G solvation = -3.145606 kcal Electronic energy + Delta-G solvation = -19779.816824 eV Core-core repulsion = 16942.585039 eV Total energy + Delta-G solvation = -2837.231785 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.62213 -38.29242 -37.13124 -35.74735 -33.39287 -32.22135 -30.90121 -26.90085 -25.85426 -24.66357 -23.43526 -23.15919 -22.05340 -20.11732 -19.36883 -17.91215 -17.45414 -17.26597 -16.28046 -15.89643 -15.73985 -15.51025 -15.22390 -14.97745 -14.69462 -14.37139 -13.93695 -13.89495 -13.52077 -13.31214 -13.12225 -12.86071 -12.68760 -12.40119 -12.34827 -12.17888 -11.73474 -11.67299 -11.49245 -11.22846 -11.08626 -10.83175 -10.34195 -9.84459 -9.45356 -8.78408 -8.68241 -6.33151 0.72719 1.45344 1.47754 1.57067 1.73561 1.80101 1.97782 2.53950 2.96867 3.01254 3.51115 3.65990 3.87978 3.99276 4.02735 4.10900 4.16137 4.30204 4.30797 4.41992 4.47303 4.50717 4.60807 4.66666 4.72821 4.75628 4.82971 4.95586 4.98229 5.08593 5.23111 5.35811 5.47052 5.76499 5.87138 6.05351 6.46914 6.63022 7.40396 7.46449 8.58812 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020632 B = 0.007409 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.763516 B = 3778.239035 C = 4774.985136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.003 3.997 3 H 0.063 0.937 4 C -0.608 4.608 5 H 0.015 0.985 6 C -0.014 4.014 7 N -0.928 5.928 8 Si 1.075 2.925 9 H -0.291 1.291 10 H -0.260 1.260 11 H -0.229 1.229 12 C 0.524 3.476 13 O -0.552 6.552 14 N -0.619 5.619 15 C 0.097 3.903 16 C -0.097 4.097 17 S -0.264 6.264 18 C -0.082 4.082 19 C 0.182 3.818 20 H 0.089 0.911 21 C -0.156 4.156 22 C -0.179 4.179 23 C -0.167 4.167 24 H 0.074 0.926 25 H 0.026 0.974 26 H 0.054 0.946 27 H 0.250 0.750 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.147 0.853 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 7.446 -18.906 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.019 4.019 3 H 0.081 0.919 4 C -0.646 4.646 5 H 0.033 0.967 6 C -0.212 4.212 7 N -0.563 5.563 8 Si 0.893 3.107 9 H -0.218 1.218 10 H -0.185 1.185 11 H -0.153 1.153 12 C 0.315 3.685 13 O -0.430 6.430 14 N -0.353 5.353 15 C -0.027 4.027 16 C -0.246 4.246 17 S -0.036 6.036 18 C -0.231 4.231 19 C 0.077 3.923 20 H 0.107 0.893 21 C -0.176 4.176 22 C -0.217 4.217 23 C -0.205 4.205 24 H 0.093 0.907 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.164 0.836 31 H 0.104 0.896 32 H 0.149 0.851 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.893 8.508 -18.784 20.823 hybrid contribution 0.806 -2.718 0.776 2.939 sum -2.087 5.790 -18.008 19.031 Atomic orbital electron populations 1.21987 0.94915 1.00201 1.01721 1.19145 0.94970 0.96952 0.90821 0.91927 1.21923 1.40667 1.09335 0.92649 0.96652 1.27364 0.92178 1.10182 0.91509 1.70977 1.46469 1.05336 1.33473 0.83726 0.79793 0.70141 0.76999 1.21754 1.18520 1.15260 1.21323 0.76215 0.86003 0.84922 1.90488 1.45965 1.21378 1.85185 1.48112 1.68515 1.13007 1.05684 1.21996 0.96126 0.81092 1.03499 1.23927 1.00192 1.06320 0.94187 1.86712 1.86385 1.16030 1.14490 1.23788 0.99307 0.96124 1.03912 1.20839 0.95505 0.91009 0.84933 0.89280 1.22991 0.97153 0.96641 1.00780 1.22753 0.93559 1.03388 1.01953 1.23159 1.03270 0.99387 0.94648 0.90714 0.95498 0.92737 0.94139 0.87540 0.88152 0.83562 0.89608 0.85064 0.90812 0.86789 0.88772 0.91453 0.88691 0.86792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 8.74 71.98 0.63 -4.43 16 2 C 0.00 0.13 1.38 -12.29 -0.02 0.11 16 3 H 0.06 2.49 5.03 -2.39 -0.01 2.48 16 4 C -0.61 -35.24 8.56 25.60 0.22 -35.02 16 5 H 0.02 1.04 7.08 -2.91 -0.02 1.02 16 6 C -0.01 -0.78 5.15 84.66 0.44 -0.35 16 7 N -0.93 -58.71 13.69 21.45 0.29 -58.41 16 8 Si 1.07 46.25 26.52 68.60 1.82 48.06 16 9 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 11 H -0.23 -8.10 6.35 99.48 0.63 -7.47 16 12 C 0.52 22.16 6.77 87.66 0.59 22.75 16 13 O -0.55 -27.63 10.90 -3.03 -0.03 -27.66 16 14 N -0.62 -19.22 2.80 -798.51 -2.23 -21.46 16 15 C 0.10 2.21 5.46 86.31 0.47 2.68 16 16 C -0.10 -1.84 6.43 71.89 0.46 -1.38 16 17 S -0.26 -5.51 22.29 -56.49 -1.26 -6.77 16 18 C -0.08 -1.86 5.86 72.06 0.42 -1.44 16 19 C 0.18 4.95 2.86 45.09 0.13 5.08 16 20 H 0.09 2.21 8.00 -2.39 -0.02 2.19 16 21 C -0.16 -4.98 3.25 -10.79 -0.04 -5.01 16 22 C -0.18 -5.53 9.95 30.60 0.30 -5.23 16 23 C -0.17 -4.08 10.05 30.60 0.31 -3.77 16 24 H 0.07 2.17 5.33 -2.38 -0.01 2.16 16 25 H 0.03 1.11 8.13 -2.39 -0.02 1.09 16 26 H 0.05 2.18 5.77 -2.39 -0.01 2.16 16 27 H 0.25 16.40 8.73 -92.70 -0.81 15.59 16 28 H 0.11 2.47 5.00 -2.39 -0.01 2.46 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 1.78 6.63 -2.39 -0.02 1.76 16 32 H 0.13 2.43 8.05 -2.39 -0.02 2.41 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.11 4.72 5.45 -57.00 -0.31 4.41 16 35 H 0.09 2.65 8.12 -2.39 -0.02 2.63 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -72.00 301.39 3.15 -68.84 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.65 Total: 23.40 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 3.92 Total: -26.00 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -1.94 Total: -79.87 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.03 Total: -27.66 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.82 Total: 48.06 kcal Atomic # 16 Polarization: -5.51 SS G_CDS: -1.26 Total: -6.77 kcal Total: -72.00 3.15 -68.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597727576.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.697 kcal (2) G-P(sol) polarization free energy of solvation -71.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds