Wall clock time and date at job start Mon Mar 30 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47597 * 2 1 4 4 C 1.50702 * 109.46810 * 240.00128 * 2 1 3 5 5 H 1.08003 * 119.99826 * 240.00311 * 4 2 1 6 6 C 1.37874 * 120.00432 * 60.00535 * 4 2 1 7 7 N 1.31520 * 119.99325 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00354 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47120 * 89.99667 * 8 6 4 10 10 H 1.48502 * 109.47244 * 209.99761 * 8 6 4 11 11 H 1.48506 * 109.47317 * 329.99843 * 8 6 4 12 12 C 1.50707 * 109.47240 * 120.00395 * 2 1 3 13 13 O 1.21276 * 119.99940 * 102.05857 * 12 2 1 14 14 N 1.34773 * 119.99525 * 282.06789 * 12 2 1 15 15 C 1.46370 * 119.65102 * 357.22000 * 14 12 2 16 16 C 1.53235 * 109.48614 * 114.93895 * 15 14 12 17 17 S 1.81737 * 108.80159 * 57.65812 * 16 15 14 18 18 C 1.81742 * 102.30519 * 305.46081 * 17 16 15 19 19 C 1.46377 * 119.64164 * 177.24963 * 14 12 2 20 20 H 1.09003 * 109.47232 * 125.06016 * 19 14 12 21 21 C 1.53005 * 109.47285 * 5.06476 * 19 14 12 22 22 C 1.52996 * 117.49911 * 258.18185 * 21 19 14 23 23 C 1.52996 * 117.50147 * 189.51896 * 21 19 14 24 24 H 1.09001 * 109.46819 * 63.51536 * 1 2 3 25 25 H 1.08999 * 109.47510 * 183.51954 * 1 2 3 26 26 H 1.08998 * 109.46690 * 303.52276 * 1 2 3 27 27 H 0.97006 * 119.99593 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.46686 * 354.93419 * 15 14 12 29 29 H 1.09000 * 109.46956 * 234.94511 * 15 14 12 30 30 H 1.09002 * 109.58444 * 177.45029 * 16 15 14 31 31 H 1.09007 * 109.58442 * 297.86068 * 16 15 14 32 32 H 1.09000 * 109.58065 * 294.74321 * 18 17 16 33 33 H 1.09001 * 109.58656 * 174.33266 * 18 17 16 34 34 H 1.08997 * 115.54597 * 43.85001 * 21 19 14 35 35 H 1.09002 * 117.49861 * 0.02562 * 22 21 19 36 36 H 1.09003 * 117.49525 * 145.01795 * 22 21 19 37 37 H 1.08994 * 117.49944 * 214.98128 * 23 21 19 38 38 H 1.09002 * 117.49941 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.3447 -2.1614 -4.4124 10 1 2.4872 -0.1401 -5.1121 11 1 3.6308 -1.7566 -3.7120 12 6 2.0323 -0.7105 1.2305 13 8 2.4413 -1.8493 1.1486 14 7 2.0269 -0.0804 2.4218 15 6 1.5888 1.3140 2.5015 16 6 0.3059 1.3999 3.3350 17 16 0.6293 0.7017 4.9815 18 6 1.2749 -0.9496 4.5820 19 6 2.4597 -0.7976 3.6221 20 1 3.2554 -0.2373 4.1131 21 6 2.9787 -2.1824 3.2295 22 6 2.0494 -3.3761 3.4582 23 6 3.2711 -3.1734 4.3579 24 1 -0.3633 0.4583 -0.9198 25 1 -0.3634 -1.0257 0.0631 26 1 -0.3632 0.5675 0.8567 27 1 0.7088 1.1615 -3.4844 28 1 1.3957 1.6920 1.4974 29 1 2.3684 1.9134 2.9716 30 1 0.0032 2.4424 3.4334 31 1 -0.4860 0.8320 2.8465 32 1 0.4933 -1.5422 4.1067 33 1 1.6059 -1.4434 5.4957 34 1 3.6279 -2.2103 2.3544 35 1 1.0681 -3.1748 3.8879 36 1 2.0875 -4.1895 2.7336 37 1 4.1123 -3.8535 4.2251 38 1 3.0941 -2.8387 5.3801 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597727581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:59 Heat of formation + Delta-G solvation = 15.649744 kcal Electronic energy + Delta-G solvation = -19790.654706 eV Core-core repulsion = 16954.237948 eV Total energy + Delta-G solvation = -2836.416758 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.11711 -37.07074 -35.58207 -33.80992 -31.26676 -30.36870 -29.34335 -25.25281 -24.93416 -23.26838 -22.39838 -21.84169 -20.20556 -18.40939 -16.64685 -16.34173 -16.14822 -15.49646 -15.14839 -14.62612 -14.49983 -14.15516 -13.83744 -13.53779 -13.16410 -12.74695 -12.39507 -12.23362 -11.89754 -11.63742 -11.39739 -11.14726 -11.05495 -10.93532 -10.71210 -10.54245 -10.38377 -10.18329 -9.97548 -9.82888 -9.78068 -9.02292 -8.47992 -8.38335 -7.87803 -7.56604 -6.09523 -4.13084 1.78077 2.51951 3.29512 3.34599 3.36246 3.43280 3.56644 4.24334 4.41031 4.74155 4.91305 5.03284 5.11149 5.13279 5.23509 5.29659 5.35498 5.39940 5.52632 5.76863 5.83312 5.87406 5.90277 6.02057 6.09125 6.22341 6.43868 6.55718 6.69720 6.76004 6.90169 7.09262 7.33855 7.68787 7.87847 8.01946 8.28941 8.93698 9.12994 9.52477 10.97692 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.023142 B = 0.006692 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.625547 B = 4183.272374 C = 5113.191252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.030 3.970 3 H 0.048 0.952 4 C -0.500 4.500 5 H 0.072 0.928 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.523 3.477 13 O -0.521 6.521 14 N -0.626 5.626 15 C 0.107 3.893 16 C -0.097 4.097 17 S -0.277 6.277 18 C -0.095 4.095 19 C 0.177 3.823 20 H 0.082 0.918 21 C -0.122 4.122 22 C -0.169 4.169 23 C -0.206 4.206 24 H 0.096 0.904 25 H 0.029 0.971 26 H 0.014 0.986 27 H 0.261 0.739 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.147 0.853 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.146 0.500 12.917 12.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.009 3.991 3 H 0.066 0.934 4 C -0.539 4.539 5 H 0.090 0.910 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.315 3.685 13 O -0.397 6.397 14 N -0.362 5.362 15 C -0.018 4.018 16 C -0.246 4.246 17 S -0.050 6.050 18 C -0.245 4.245 19 C 0.071 3.929 20 H 0.100 0.900 21 C -0.141 4.141 22 C -0.206 4.206 23 C -0.244 4.244 24 H 0.114 0.886 25 H 0.049 0.951 26 H 0.033 0.967 27 H 0.071 0.929 28 H 0.132 0.868 29 H 0.093 0.907 30 H 0.131 0.869 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.164 0.836 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.103 0.489 13.736 13.745 hybrid contribution 0.204 -0.896 -1.825 2.043 sum 0.307 -0.407 11.912 11.922 Atomic orbital electron populations 1.21777 0.96288 0.99394 1.01636 1.18919 0.94187 0.96592 0.89365 0.93414 1.21099 1.31133 1.12619 0.89003 0.91029 1.24932 0.95081 0.95023 0.99099 1.69856 1.36990 1.23010 1.23631 0.86460 0.79432 0.79276 0.82101 1.20650 1.21264 1.19794 1.22057 0.75491 0.86881 0.84091 1.90487 1.45597 1.18916 1.84689 1.48242 1.67884 1.12540 1.07525 1.21811 0.94281 0.83068 1.02640 1.23958 1.01822 1.04462 0.94354 1.86626 1.85068 1.18551 1.14738 1.24134 1.01617 0.95401 1.03300 1.20698 0.93742 0.92873 0.85542 0.89986 1.22904 1.04299 0.88118 0.98783 1.22892 0.94117 1.01365 1.02235 1.23208 1.00379 1.05023 0.95779 0.88577 0.95133 0.96741 0.92886 0.86843 0.90688 0.86929 0.89056 0.89156 0.87383 0.83588 0.89575 0.89128 0.89244 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.79 37.16 0.33 -2.65 16 2 C 0.03 0.71 1.77 -92.92 -0.16 0.55 16 3 H 0.05 1.15 6.49 -51.93 -0.34 0.81 16 4 C -0.50 -13.62 8.35 -34.44 -0.29 -13.91 16 5 H 0.07 2.05 6.90 -52.48 -0.36 1.69 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -24.35 11.30 55.43 0.63 -23.72 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.52 11.17 6.76 -10.98 -0.07 11.10 16 13 O -0.52 -12.19 10.82 5.56 0.06 -12.13 16 14 N -0.63 -10.70 2.79 -166.01 -0.46 -11.16 16 15 C 0.11 1.55 5.49 -3.99 -0.02 1.53 16 16 C -0.10 -1.26 6.47 37.28 0.24 -1.01 16 17 S -0.28 -3.69 22.29 -107.50 -2.40 -6.09 16 18 C -0.10 -1.28 4.77 37.28 0.18 -1.10 16 19 C 0.18 2.67 3.16 -67.87 -0.21 2.45 16 20 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 21 C -0.12 -1.96 3.82 -90.62 -0.35 -2.30 16 22 C -0.17 -2.57 9.19 -26.70 -0.25 -2.82 16 23 C -0.21 -2.70 9.90 -26.69 -0.26 -2.97 16 24 H 0.10 2.38 5.98 -51.93 -0.31 2.06 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.01 0.26 5.57 -51.93 -0.29 -0.03 16 27 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.11 1.78 4.92 -51.93 -0.26 1.53 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.09 1.29 6.85 -51.92 -0.36 0.93 16 32 H 0.09 1.32 6.41 -51.93 -0.33 0.99 16 33 H 0.11 1.28 6.88 -51.93 -0.36 0.92 16 34 H 0.15 2.84 5.86 -53.20 -0.31 2.52 16 35 H 0.09 1.24 5.84 -51.93 -0.30 0.94 16 36 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.08 0.95 7.05 -51.93 -0.37 0.59 16 LS Contribution 297.76 15.07 4.49 4.49 Total: -1.00 -28.09 297.76 -8.93 -37.02 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.25 Total: 4.93 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -0.97 Total: -9.63 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.16 Total: -34.89 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.06 Total: -12.13 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -2.40 Total: -6.09 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.09 -8.93 -37.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597727581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.670 kcal (2) G-P(sol) polarization free energy of solvation -28.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds