Wall clock time and date at job start Mon Mar 30 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47597 * 2 1 4 4 C 1.50702 * 109.46810 * 240.00128 * 2 1 3 5 5 H 1.08003 * 119.99826 * 240.00311 * 4 2 1 6 6 C 1.37874 * 120.00432 * 60.00535 * 4 2 1 7 7 N 1.31520 * 119.99325 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00354 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47120 * 89.99667 * 8 6 4 10 10 H 1.48502 * 109.47244 * 209.99761 * 8 6 4 11 11 H 1.48506 * 109.47317 * 329.99843 * 8 6 4 12 12 C 1.50707 * 109.47240 * 120.00395 * 2 1 3 13 13 O 1.21276 * 119.99940 * 102.05857 * 12 2 1 14 14 N 1.34773 * 119.99525 * 282.06789 * 12 2 1 15 15 C 1.46370 * 119.65102 * 357.22000 * 14 12 2 16 16 C 1.53235 * 109.48614 * 114.93895 * 15 14 12 17 17 S 1.81737 * 108.80159 * 57.65812 * 16 15 14 18 18 C 1.81742 * 102.30519 * 305.46081 * 17 16 15 19 19 C 1.46377 * 119.64164 * 177.24963 * 14 12 2 20 20 H 1.09003 * 109.47232 * 125.06016 * 19 14 12 21 21 C 1.53005 * 109.47285 * 5.06476 * 19 14 12 22 22 C 1.52996 * 117.49911 * 258.18185 * 21 19 14 23 23 C 1.52996 * 117.50147 * 189.51896 * 21 19 14 24 24 H 1.09001 * 109.46819 * 63.51536 * 1 2 3 25 25 H 1.08999 * 109.47510 * 183.51954 * 1 2 3 26 26 H 1.08998 * 109.46690 * 303.52276 * 1 2 3 27 27 H 0.97006 * 119.99593 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.46686 * 354.93419 * 15 14 12 29 29 H 1.09000 * 109.46956 * 234.94511 * 15 14 12 30 30 H 1.09002 * 109.58444 * 177.45029 * 16 15 14 31 31 H 1.09007 * 109.58442 * 297.86068 * 16 15 14 32 32 H 1.09000 * 109.58065 * 294.74321 * 18 17 16 33 33 H 1.09001 * 109.58656 * 174.33266 * 18 17 16 34 34 H 1.08997 * 115.54597 * 43.85001 * 21 19 14 35 35 H 1.09002 * 117.49861 * 0.02562 * 22 21 19 36 36 H 1.09003 * 117.49525 * 145.01795 * 22 21 19 37 37 H 1.08994 * 117.49944 * 214.98128 * 23 21 19 38 38 H 1.09002 * 117.49941 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.3447 -2.1614 -4.4124 10 1 2.4872 -0.1401 -5.1121 11 1 3.6308 -1.7566 -3.7120 12 6 2.0323 -0.7105 1.2305 13 8 2.4413 -1.8493 1.1486 14 7 2.0269 -0.0804 2.4218 15 6 1.5888 1.3140 2.5015 16 6 0.3059 1.3999 3.3350 17 16 0.6293 0.7017 4.9815 18 6 1.2749 -0.9496 4.5820 19 6 2.4597 -0.7976 3.6221 20 1 3.2554 -0.2373 4.1131 21 6 2.9787 -2.1824 3.2295 22 6 2.0494 -3.3761 3.4582 23 6 3.2711 -3.1734 4.3579 24 1 -0.3633 0.4583 -0.9198 25 1 -0.3634 -1.0257 0.0631 26 1 -0.3632 0.5675 0.8567 27 1 0.7088 1.1615 -3.4844 28 1 1.3957 1.6920 1.4974 29 1 2.3684 1.9134 2.9716 30 1 0.0032 2.4424 3.4334 31 1 -0.4860 0.8320 2.8465 32 1 0.4933 -1.5422 4.1067 33 1 1.6059 -1.4434 5.4957 34 1 3.6279 -2.2103 2.3544 35 1 1.0681 -3.1748 3.8879 36 1 2.0875 -4.1895 2.7336 37 1 4.1123 -3.8535 4.2251 38 1 3.0941 -2.8387 5.3801 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597727581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:59 Heat of formation + Delta-G solvation = 0.639800 kcal Electronic energy + Delta-G solvation = -19791.305586 eV Core-core repulsion = 16954.237948 eV Total energy + Delta-G solvation = -2837.067638 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.56725 -38.44809 -36.98127 -35.72010 -32.80129 -31.87561 -30.66153 -27.26585 -26.22424 -24.62301 -23.84737 -23.07841 -21.61493 -19.86011 -18.32571 -17.92132 -17.54784 -16.96600 -16.49849 -16.20761 -15.90711 -15.38553 -15.22303 -14.91749 -14.61046 -14.15602 -14.12416 -13.54001 -13.27396 -13.11529 -12.87213 -12.78342 -12.58838 -12.49942 -12.27658 -12.19438 -12.10695 -11.84914 -11.43898 -11.10204 -11.04277 -10.80596 -10.51730 -9.71960 -9.43176 -8.66165 -8.16100 -6.25909 0.73322 1.38776 1.40497 1.45521 1.50809 1.90118 2.04825 2.43587 3.06419 3.13716 3.53993 3.74129 3.90312 3.96409 4.05459 4.17487 4.18830 4.23047 4.39930 4.45670 4.66142 4.66398 4.71879 4.79647 4.82708 4.89271 5.01251 5.03490 5.07531 5.29402 5.41232 5.43901 5.70787 5.76592 5.93326 6.18679 6.53995 6.81184 7.39802 7.53330 8.89251 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.023142 B = 0.006692 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.625547 B = 4183.272374 C = 5113.191252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.028 3.972 3 H 0.043 0.957 4 C -0.525 4.525 5 H 0.046 0.954 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.951 3.049 9 H -0.278 1.278 10 H -0.275 1.275 11 H -0.278 1.278 12 C 0.521 3.479 13 O -0.551 6.551 14 N -0.620 5.620 15 C 0.102 3.898 16 C -0.094 4.094 17 S -0.264 6.264 18 C -0.090 4.090 19 C 0.178 3.822 20 H 0.098 0.902 21 C -0.142 4.142 22 C -0.180 4.180 23 C -0.170 4.170 24 H 0.073 0.927 25 H 0.014 0.986 26 H 0.048 0.952 27 H 0.265 0.735 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.140 0.860 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.041 1.172 14.907 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.007 3.993 3 H 0.060 0.940 4 C -0.564 4.564 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.777 3.223 9 H -0.204 1.204 10 H -0.200 1.200 11 H -0.203 1.203 12 C 0.312 3.688 13 O -0.429 6.429 14 N -0.354 5.354 15 C -0.022 4.022 16 C -0.243 4.243 17 S -0.036 6.036 18 C -0.239 4.239 19 C 0.073 3.927 20 H 0.115 0.885 21 C -0.162 4.162 22 C -0.217 4.217 23 C -0.207 4.207 24 H 0.091 0.909 25 H 0.033 0.967 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.158 0.842 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.150 0.850 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.012 1.191 15.757 15.802 hybrid contribution 0.264 -1.085 -2.408 2.654 sum 0.252 0.106 13.349 13.352 Atomic orbital electron populations 1.21566 0.95522 0.98608 1.01907 1.18818 0.94784 0.96022 0.89683 0.93963 1.21265 1.31526 1.12432 0.91132 0.93537 1.25530 0.95250 0.95702 1.01239 1.69928 1.37162 1.23484 1.24269 0.85662 0.78597 0.78542 0.79478 1.20383 1.19983 1.20327 1.21581 0.75760 0.86509 0.84950 1.90518 1.46817 1.19987 1.85537 1.48134 1.66836 1.13436 1.06994 1.21985 0.95948 0.81647 1.02589 1.23935 1.00280 1.06053 0.94014 1.86634 1.84884 1.17893 1.14198 1.24058 1.00337 0.95926 1.03578 1.20840 0.94911 0.92162 0.84766 0.88451 1.22620 1.04710 0.89438 0.99408 1.22878 0.95461 1.00436 1.02941 1.23252 0.98986 1.02489 0.95992 0.90866 0.96686 0.93346 0.92607 0.88249 0.88448 0.84192 0.90222 0.90439 0.84996 0.87524 0.88605 0.91246 0.88576 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.79 71.98 0.63 -4.72 16 2 C 0.03 1.35 1.77 -12.28 -0.02 1.33 16 3 H 0.04 2.08 6.49 -2.39 -0.02 2.06 16 4 C -0.53 -29.58 8.35 25.60 0.21 -29.37 16 5 H 0.05 2.80 6.90 -2.91 -0.02 2.78 16 6 C 0.02 1.21 5.30 84.65 0.45 1.66 16 7 N -0.91 -49.87 11.30 21.45 0.24 -49.63 16 8 Si 0.95 44.30 29.54 68.60 2.03 46.33 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 C 0.52 22.75 6.76 87.66 0.59 23.34 16 13 O -0.55 -26.86 10.82 -3.02 -0.03 -26.89 16 14 N -0.62 -20.72 2.79 -797.52 -2.22 -22.95 16 15 C 0.10 2.79 5.49 86.48 0.48 3.27 16 16 C -0.09 -2.18 6.47 72.06 0.47 -1.72 16 17 S -0.26 -6.15 22.29 -56.49 -1.26 -7.41 16 18 C -0.09 -2.17 4.77 72.06 0.34 -1.82 16 19 C 0.18 5.05 3.16 45.10 0.14 5.19 16 20 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 21 C -0.14 -4.51 3.82 -10.79 -0.04 -4.55 16 22 C -0.18 -5.40 9.19 30.62 0.28 -5.12 16 23 C -0.17 -4.06 9.90 30.62 0.30 -3.76 16 24 H 0.07 3.67 5.98 -2.39 -0.01 3.66 16 25 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 1.80 5.57 -2.39 -0.01 1.79 16 27 H 0.26 13.80 8.31 -92.70 -0.77 13.03 16 28 H 0.10 3.03 4.92 -2.38 -0.01 3.02 16 29 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.08 2.07 6.85 -2.38 -0.02 2.05 16 32 H 0.08 2.11 6.41 -2.39 -0.02 2.09 16 33 H 0.13 2.56 6.88 -2.39 -0.02 2.54 16 34 H 0.11 4.31 5.86 -22.45 -0.13 4.18 16 35 H 0.10 2.65 5.84 -2.39 -0.01 2.64 16 36 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.11 2.08 7.05 -2.39 -0.02 2.06 16 Total: -1.00 -62.00 297.76 3.54 -58.47 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.95 Total: 18.34 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 3.84 Total: -16.26 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -1.98 Total: -72.58 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.03 Total: -26.89 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -6.15 SS G_CDS: -1.26 Total: -7.41 kcal Total: -62.00 3.54 -58.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597727581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.106 kcal (2) G-P(sol) polarization free energy of solvation -62.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds