Wall clock time and date at job start Mon Mar 30 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46817 * 2 1 4 4 C 1.50697 * 109.46864 * 120.00119 * 2 1 3 5 5 H 1.07993 * 120.00037 * 120.00154 * 4 2 1 6 6 C 1.37883 * 119.99611 * 299.99648 * 4 2 1 7 7 N 1.31508 * 120.00044 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99721 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47318 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47085 * 120.00310 * 8 6 4 11 11 H 1.48502 * 109.47135 * 240.00275 * 8 6 4 12 12 C 1.50700 * 109.46993 * 239.99822 * 2 1 3 13 13 O 1.21278 * 119.99863 * 258.49731 * 12 2 1 14 14 N 1.34777 * 119.99821 * 78.49966 * 12 2 1 15 15 C 1.46374 * 119.65002 * 3.19101 * 14 12 2 16 16 C 1.53237 * 109.49152 * 114.93299 * 15 14 12 17 17 S 1.81741 * 108.79812 * 57.65417 * 16 15 14 18 18 C 1.81742 * 102.30559 * 305.46037 * 17 16 15 19 19 C 1.46379 * 119.64393 * 183.20730 * 14 12 2 20 20 H 1.08996 * 109.46466 * 125.06658 * 19 14 12 21 21 C 1.52999 * 109.47016 * 5.07140 * 19 14 12 22 22 C 1.53001 * 117.49612 * 92.84908 * 21 19 14 23 23 C 1.52999 * 117.49974 * 161.51096 * 21 19 14 24 24 H 1.08996 * 109.47047 * 186.38963 * 1 2 3 25 25 H 1.09000 * 109.47400 * 306.39581 * 1 2 3 26 26 H 1.09005 * 109.46745 * 66.39415 * 1 2 3 27 27 H 0.97007 * 119.99999 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.46771 * 234.93978 * 15 14 12 29 29 H 1.09007 * 109.46629 * 354.92425 * 15 14 12 30 30 H 1.09002 * 109.58275 * 177.45532 * 16 15 14 31 31 H 1.09003 * 109.58115 * 297.86215 * 16 15 14 32 32 H 1.08996 * 109.58172 * 294.74214 * 18 17 16 33 33 H 1.08997 * 109.57963 * 174.33355 * 18 17 16 34 34 H 1.09000 * 115.55123 * 307.18841 * 21 19 14 35 35 H 1.08998 * 117.49838 * 215.00144 * 22 21 19 36 36 H 1.09000 * 117.50053 * 0.02834 * 22 21 19 37 37 H 1.09006 * 117.49749 * 359.97438 * 23 21 19 38 38 H 1.08998 * 117.49988 * 144.97916 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3224 -1.1195 4.0080 9 1 3.1482 -2.2856 3.6039 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5865 4.8165 12 6 2.0324 -0.7104 -1.2304 13 8 2.4319 -1.8527 -1.1504 14 7 2.0376 -0.0764 -2.4197 15 6 1.6198 1.3244 -2.4953 16 6 2.8117 2.1916 -2.9142 17 16 3.4411 1.5907 -4.5097 18 6 3.7474 -0.1678 -4.1678 19 6 2.4606 -0.7961 -3.6221 20 1 1.6772 -0.7336 -4.3773 21 6 2.7176 -2.2637 -3.2740 22 6 1.5594 -3.2464 -3.4574 23 6 2.7437 -3.2691 -4.4270 24 1 -0.3633 -1.0212 0.1144 25 1 -0.3634 0.6098 0.8272 26 1 -0.3633 0.4115 -0.9417 27 1 0.7081 1.1610 3.4843 28 1 0.8207 1.4261 -3.2297 29 1 1.2594 1.6492 -1.5192 30 1 2.4915 3.2287 -3.0148 31 1 3.5971 2.1210 -2.1617 32 1 4.5426 -0.2631 -3.4286 33 1 4.0390 -0.6735 -5.0883 34 1 3.3973 -2.4369 -2.4397 35 1 1.4772 -4.0662 -2.7438 36 1 0.6145 -2.8475 -3.8264 37 1 2.5773 -2.8850 -5.4335 38 1 3.4408 -4.1035 -4.3514 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597727583.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:06 Heat of formation + Delta-G solvation = 10.170269 kcal Electronic energy + Delta-G solvation = -19686.911257 eV Core-core repulsion = 16850.256891 eV Total energy + Delta-G solvation = -2836.654366 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.01899 -36.80844 -35.59982 -33.81147 -31.52839 -30.48608 -29.35476 -25.24052 -24.41850 -23.37881 -22.07059 -21.78691 -20.69943 -18.59170 -16.59450 -16.35918 -15.86490 -15.53638 -14.85495 -14.79725 -14.49922 -14.19506 -13.75771 -13.38551 -13.03769 -12.87260 -12.40412 -12.26231 -11.99854 -11.54209 -11.49993 -11.23828 -11.08137 -10.92817 -10.71937 -10.51509 -10.33656 -10.20745 -10.03104 -9.89122 -9.64850 -9.01438 -8.49097 -8.39768 -7.86568 -7.57653 -6.09788 -4.12399 1.79316 2.52933 3.27792 3.34875 3.37101 3.45135 3.55751 4.23545 4.41181 4.78086 4.89195 5.02665 5.15039 5.18327 5.24831 5.32943 5.40341 5.54909 5.55959 5.70343 5.79254 5.86430 5.88847 6.00917 6.08542 6.20940 6.43794 6.57945 6.70832 6.75910 6.91291 7.11786 7.37035 7.68117 7.88820 7.99975 8.29088 8.94418 9.14751 9.53016 10.98228 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020601 B = 0.006699 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.825102 B = 4178.989184 C = 4952.906224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.030 3.970 3 H 0.047 0.953 4 C -0.500 4.500 5 H 0.072 0.928 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.525 3.475 13 O -0.523 6.523 14 N -0.627 5.627 15 C 0.107 3.893 16 C -0.097 4.097 17 S -0.278 6.278 18 C -0.086 4.086 19 C 0.178 3.822 20 H 0.073 0.927 21 C -0.129 4.129 22 C -0.163 4.163 23 C -0.205 4.205 24 H 0.035 0.965 25 H 0.090 0.910 26 H 0.012 0.988 27 H 0.261 0.739 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.150 0.850 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.550 0.930 -12.731 12.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.009 3.991 3 H 0.065 0.935 4 C -0.539 4.539 5 H 0.090 0.910 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.317 3.683 13 O -0.399 6.399 14 N -0.362 5.362 15 C -0.018 4.018 16 C -0.246 4.246 17 S -0.050 6.050 18 C -0.235 4.235 19 C 0.073 3.927 20 H 0.091 0.909 21 C -0.149 4.149 22 C -0.200 4.200 23 C -0.242 4.242 24 H 0.055 0.945 25 H 0.109 0.891 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.168 0.832 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.862 1.029 -13.494 13.661 hybrid contribution 0.051 -0.889 1.820 2.026 sum 1.913 0.140 -11.674 11.830 Atomic orbital electron populations 1.21727 0.96141 1.01181 0.99664 1.18931 0.94272 0.96535 0.89402 0.93522 1.21124 1.31195 1.12584 0.88976 0.91008 1.24930 0.95050 0.95018 0.99091 1.69880 1.36998 1.23053 1.23521 0.86425 0.78669 0.79771 0.82561 1.19609 1.21059 1.20984 1.22055 0.75343 0.86888 0.83977 1.90442 1.46301 1.18774 1.84352 1.48255 1.68543 1.11778 1.07664 1.21820 0.94801 0.80591 1.04570 1.23914 1.01763 1.02731 0.96195 1.86624 1.86111 1.11023 1.21226 1.23856 1.01382 0.93151 1.05126 1.20736 0.93919 0.90529 0.87531 0.90893 1.23025 1.04491 0.88412 0.98946 1.22751 0.92718 1.02670 1.01883 1.23148 1.02678 1.03303 0.95113 0.94542 0.89145 0.96899 0.92963 0.90785 0.86812 0.86888 0.89161 0.89401 0.87281 0.83247 0.89022 0.89914 0.89852 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.52 37.16 0.32 -2.59 16 2 C 0.03 0.70 1.76 -92.92 -0.16 0.53 16 3 H 0.05 1.12 6.64 -51.93 -0.34 0.78 16 4 C -0.50 -13.64 8.35 -34.44 -0.29 -13.92 16 5 H 0.07 2.07 6.91 -52.49 -0.36 1.71 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -24.39 11.39 55.43 0.63 -23.76 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.52 11.24 6.74 -10.99 -0.07 11.16 16 13 O -0.52 -12.25 10.93 5.56 0.06 -12.19 16 14 N -0.63 -10.74 2.79 -166.01 -0.46 -11.20 16 15 C 0.11 1.57 5.47 -3.99 -0.02 1.54 16 16 C -0.10 -1.27 6.67 37.28 0.25 -1.02 16 17 S -0.28 -3.71 22.29 -107.50 -2.40 -6.11 16 18 C -0.09 -1.16 5.95 37.28 0.22 -0.94 16 19 C 0.18 2.70 2.80 -67.87 -0.19 2.51 16 20 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 21 C -0.13 -2.08 3.11 -90.62 -0.28 -2.36 16 22 C -0.16 -2.52 9.80 -26.69 -0.26 -2.78 16 23 C -0.20 -2.69 10.25 -26.69 -0.27 -2.97 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.09 2.21 6.27 -51.93 -0.33 1.88 16 26 H 0.01 0.24 7.05 -51.93 -0.37 -0.13 16 27 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.11 1.79 4.77 -51.93 -0.25 1.55 16 30 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.15 2.88 5.77 -53.64 -0.31 2.57 16 35 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -28.22 308.19 -9.14 -37.36 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.74 Total: 4.24 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -0.86 Total: -9.30 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.17 Total: -34.96 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.06 Total: -12.19 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -2.40 Total: -6.11 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.22 -9.14 -37.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597727583.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.535 kcal (2) G-P(sol) polarization free energy of solvation -28.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds