Wall clock time and date at job start Mon Mar 30 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46817 * 2 1 4 4 C 1.50697 * 109.46864 * 120.00119 * 2 1 3 5 5 H 1.07993 * 120.00037 * 120.00154 * 4 2 1 6 6 C 1.37883 * 119.99611 * 299.99648 * 4 2 1 7 7 N 1.31508 * 120.00044 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99721 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47318 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47085 * 120.00310 * 8 6 4 11 11 H 1.48502 * 109.47135 * 240.00275 * 8 6 4 12 12 C 1.50700 * 109.46993 * 239.99822 * 2 1 3 13 13 O 1.21278 * 119.99863 * 258.49731 * 12 2 1 14 14 N 1.34777 * 119.99821 * 78.49966 * 12 2 1 15 15 C 1.46374 * 119.65002 * 3.19101 * 14 12 2 16 16 C 1.53237 * 109.49152 * 114.93299 * 15 14 12 17 17 S 1.81741 * 108.79812 * 57.65417 * 16 15 14 18 18 C 1.81742 * 102.30559 * 305.46037 * 17 16 15 19 19 C 1.46379 * 119.64393 * 183.20730 * 14 12 2 20 20 H 1.08996 * 109.46466 * 125.06658 * 19 14 12 21 21 C 1.52999 * 109.47016 * 5.07140 * 19 14 12 22 22 C 1.53001 * 117.49612 * 92.84908 * 21 19 14 23 23 C 1.52999 * 117.49974 * 161.51096 * 21 19 14 24 24 H 1.08996 * 109.47047 * 186.38963 * 1 2 3 25 25 H 1.09000 * 109.47400 * 306.39581 * 1 2 3 26 26 H 1.09005 * 109.46745 * 66.39415 * 1 2 3 27 27 H 0.97007 * 119.99999 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.46771 * 234.93978 * 15 14 12 29 29 H 1.09007 * 109.46629 * 354.92425 * 15 14 12 30 30 H 1.09002 * 109.58275 * 177.45532 * 16 15 14 31 31 H 1.09003 * 109.58115 * 297.86215 * 16 15 14 32 32 H 1.08996 * 109.58172 * 294.74214 * 18 17 16 33 33 H 1.08997 * 109.57963 * 174.33355 * 18 17 16 34 34 H 1.09000 * 115.55123 * 307.18841 * 21 19 14 35 35 H 1.08998 * 117.49838 * 215.00144 * 22 21 19 36 36 H 1.09000 * 117.50053 * 0.02834 * 22 21 19 37 37 H 1.09006 * 117.49749 * 359.97438 * 23 21 19 38 38 H 1.08998 * 117.49988 * 144.97916 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3224 -1.1195 4.0080 9 1 3.1482 -2.2856 3.6039 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5865 4.8165 12 6 2.0324 -0.7104 -1.2304 13 8 2.4319 -1.8527 -1.1504 14 7 2.0376 -0.0764 -2.4197 15 6 1.6198 1.3244 -2.4953 16 6 2.8117 2.1916 -2.9142 17 16 3.4411 1.5907 -4.5097 18 6 3.7474 -0.1678 -4.1678 19 6 2.4606 -0.7961 -3.6221 20 1 1.6772 -0.7336 -4.3773 21 6 2.7176 -2.2637 -3.2740 22 6 1.5594 -3.2464 -3.4574 23 6 2.7437 -3.2691 -4.4270 24 1 -0.3633 -1.0212 0.1144 25 1 -0.3634 0.6098 0.8272 26 1 -0.3633 0.4115 -0.9417 27 1 0.7081 1.1610 3.4843 28 1 0.8207 1.4261 -3.2297 29 1 1.2594 1.6492 -1.5192 30 1 2.4915 3.2287 -3.0148 31 1 3.5971 2.1210 -2.1617 32 1 4.5426 -0.2631 -3.4286 33 1 4.0390 -0.6735 -5.0883 34 1 3.3973 -2.4369 -2.4397 35 1 1.4772 -4.0662 -2.7438 36 1 0.6145 -2.8475 -3.8264 37 1 2.5773 -2.8850 -5.4335 38 1 3.4408 -4.1035 -4.3514 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597727583.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:05 Heat of formation + Delta-G solvation = -4.662978 kcal Electronic energy + Delta-G solvation = -19687.554475 eV Core-core repulsion = 16850.256891 eV Total energy + Delta-G solvation = -2837.297584 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.48935 -38.18827 -36.98830 -35.71660 -32.98527 -32.05690 -30.71926 -27.26014 -25.74648 -24.75497 -23.41740 -23.07603 -22.06206 -20.13460 -18.35214 -17.80936 -17.28549 -16.95266 -16.53926 -16.15262 -15.88580 -15.45876 -15.07054 -14.83955 -14.50739 -14.32100 -14.08110 -13.52418 -13.34746 -13.18443 -12.93534 -12.70151 -12.63529 -12.56133 -12.35352 -12.23950 -12.11329 -11.75013 -11.43283 -11.16530 -11.02158 -10.79203 -10.53216 -9.74348 -9.43162 -8.67842 -8.16871 -6.25624 0.73233 1.36928 1.39983 1.45038 1.51816 1.90956 2.03927 2.43161 3.04922 3.13825 3.58193 3.69262 3.88882 4.05161 4.06271 4.17593 4.23388 4.38689 4.39150 4.46540 4.56313 4.68271 4.73266 4.78561 4.82655 4.90846 4.92715 5.03140 5.04968 5.29245 5.42377 5.47050 5.72524 5.78400 5.91700 6.17235 6.54348 6.81463 7.40199 7.54614 8.89476 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020601 B = 0.006699 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.825102 B = 4178.989184 C = 4952.906224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.027 3.973 3 H 0.042 0.958 4 C -0.524 4.524 5 H 0.046 0.954 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.950 3.050 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.276 1.276 12 C 0.524 3.476 13 O -0.552 6.552 14 N -0.620 5.620 15 C 0.103 3.897 16 C -0.094 4.094 17 S -0.264 6.264 18 C -0.083 4.083 19 C 0.181 3.819 20 H 0.091 0.909 21 C -0.146 4.146 22 C -0.178 4.178 23 C -0.167 4.167 24 H 0.017 0.983 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.141 0.859 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.134 0.866 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.477 1.608 -14.694 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.006 3.994 3 H 0.059 0.941 4 C -0.563 4.563 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.549 5.549 8 Si 0.776 3.224 9 H -0.205 1.205 10 H -0.200 1.200 11 H -0.202 1.202 12 C 0.315 3.685 13 O -0.430 6.430 14 N -0.355 5.355 15 C -0.021 4.021 16 C -0.243 4.243 17 S -0.036 6.036 18 C -0.232 4.232 19 C 0.076 3.924 20 H 0.109 0.891 21 C -0.166 4.166 22 C -0.215 4.215 23 C -0.205 4.205 24 H 0.036 0.964 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.159 0.841 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.152 0.848 34 H 0.130 0.870 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.787 1.741 -15.486 15.685 hybrid contribution 0.091 -1.089 2.395 2.633 sum 1.878 0.652 -13.090 13.240 Atomic orbital electron populations 1.21518 0.95382 0.99725 1.00601 1.18828 0.94863 0.95961 0.89718 0.94067 1.21270 1.31554 1.12343 0.91102 0.93600 1.25527 0.95234 0.95699 1.01233 1.69947 1.37189 1.23524 1.24202 0.85622 0.78315 0.78640 0.79780 1.20540 1.19980 1.20197 1.21579 0.75606 0.86518 0.84804 1.90482 1.47516 1.19836 1.85203 1.48152 1.67479 1.12719 1.07106 1.21997 0.96207 0.79213 1.04706 1.23895 1.00594 1.03957 0.95899 1.86610 1.85998 1.10405 1.20591 1.23813 0.99868 0.93796 1.05696 1.20873 0.95179 0.89755 0.86604 0.89092 1.22720 1.04328 0.89705 0.99872 1.22750 0.93635 1.02220 1.02923 1.23194 1.00460 1.01660 0.95160 0.96365 0.91107 0.93548 0.92636 0.88274 0.88182 0.84149 0.90719 0.91048 0.84809 0.87024 0.90977 0.89204 0.87045 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.18 8.52 71.98 0.61 -4.57 16 2 C 0.03 1.32 1.76 -12.29 -0.02 1.30 16 3 H 0.04 2.02 6.64 -2.39 -0.02 2.01 16 4 C -0.52 -29.54 8.35 25.60 0.21 -29.33 16 5 H 0.05 2.77 6.91 -2.91 -0.02 2.75 16 6 C 0.02 1.23 5.30 84.66 0.45 1.68 16 7 N -0.91 -49.94 11.39 21.45 0.24 -49.70 16 8 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 9 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 C 0.52 22.85 6.74 87.66 0.59 23.44 16 13 O -0.55 -26.93 10.93 -3.02 -0.03 -26.96 16 14 N -0.62 -20.75 2.79 -797.53 -2.22 -22.97 16 15 C 0.10 2.81 5.47 86.48 0.47 3.29 16 16 C -0.09 -2.27 6.67 72.06 0.48 -1.79 16 17 S -0.26 -6.30 22.29 -56.49 -1.26 -7.56 16 18 C -0.08 -2.04 5.95 72.06 0.43 -1.61 16 19 C 0.18 5.12 2.80 45.09 0.13 5.25 16 20 H 0.09 2.32 8.08 -2.39 -0.02 2.30 16 21 C -0.15 -4.62 3.11 -10.79 -0.03 -4.65 16 22 C -0.18 -5.39 9.80 30.62 0.30 -5.09 16 23 C -0.17 -3.99 10.25 30.62 0.31 -3.68 16 24 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 3.49 6.27 -2.39 -0.01 3.48 16 26 H 0.05 1.74 7.05 -2.38 -0.02 1.72 16 27 H 0.26 13.77 8.31 -92.70 -0.77 13.00 16 28 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.10 3.05 4.77 -2.38 -0.01 3.04 16 30 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.11 4.46 5.77 -29.54 -0.17 4.29 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.09 2.55 8.14 -2.39 -0.02 2.54 16 37 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -62.11 308.19 3.57 -58.53 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.89 Total: 18.03 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 3.93 Total: -15.75 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -1.98 Total: -72.67 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.03 Total: -26.96 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: -6.30 SS G_CDS: -1.26 Total: -7.56 kcal Total: -62.11 3.57 -58.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597727583.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.870 kcal (2) G-P(sol) polarization free energy of solvation -62.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds