Wall clock time and date at job start Mon Mar 30 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99775 * 2 1 4 4 H 1.48498 * 109.47184 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46881 * 299.99770 * 3 2 1 6 6 H 1.48497 * 109.47353 * 59.99524 * 3 2 1 7 7 C 1.37871 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99979 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00382 * 359.97438 * 7 2 1 10 10 C 1.53500 * 114.21006 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98253 * 220.14993 * 10 9 7 12 12 C 1.34774 * 136.05240 * 207.08405 * 11 10 9 13 13 O 1.21279 * 120.00472 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00020 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47238 * 180.02562 * 14 12 11 16 16 C 1.52581 * 109.22575 * 295.59690 * 15 14 12 17 17 C 1.53118 * 109.94808 * 168.96275 * 16 15 14 18 18 S 1.81752 * 108.80579 * 63.08383 * 17 16 15 19 19 C 1.81745 * 102.22335 * 306.71527 * 18 17 16 20 20 C 1.52582 * 109.22737 * 174.40114 * 15 14 12 21 21 C 1.47068 * 87.88844 * 27.34268 * 11 10 9 22 22 H 0.96993 * 120.00376 * 0.02562 * 1 2 3 23 23 H 1.09005 * 113.28199 * 313.07196 * 9 7 2 24 24 H 1.08995 * 113.46360 * 105.37055 * 10 9 7 25 25 H 1.08999 * 113.51829 * 334.93630 * 10 9 7 26 26 H 1.09001 * 109.46953 * 299.99667 * 14 12 11 27 27 H 1.09000 * 109.47318 * 59.99264 * 14 12 11 28 28 H 1.08998 * 109.22125 * 54.99619 * 15 14 12 29 29 H 1.09000 * 109.38882 * 289.15284 * 16 15 14 30 30 H 1.08998 * 109.38999 * 48.85335 * 16 15 14 31 31 H 1.08999 * 109.60924 * 303.28088 * 17 16 15 32 32 H 1.08998 * 109.68193 * 182.93152 * 17 16 15 33 33 H 1.09007 * 109.57528 * 293.45994 * 19 18 17 34 34 H 1.08994 * 109.57718 * 173.07043 * 19 18 17 35 35 H 1.09005 * 109.38805 * 311.14339 * 20 15 14 36 36 H 1.08996 * 109.39091 * 70.84286 * 20 15 14 37 37 H 1.08998 * 113.46458 * 87.43503 * 21 11 10 38 38 H 1.08996 * 113.46737 * 217.87850 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0017 10 6 2.1489 -3.7442 0.0028 11 7 1.2074 -4.3602 -0.9443 12 6 0.8321 -5.6150 -1.2619 13 8 1.3283 -6.5604 -0.6866 14 6 -0.2042 -5.8436 -2.3319 15 6 -0.4466 -7.3454 -2.4948 16 6 0.8313 -8.0087 -3.0000 17 6 0.7005 -9.5316 -2.9091 18 16 -0.6472 -10.0703 -4.0031 19 6 -2.0318 -9.0323 -3.4477 20 6 -1.5931 -7.5658 -3.4771 21 6 0.8606 -3.0045 -1.3969 22 1 -0.4850 0.8400 -0.0004 23 1 0.4438 -2.5300 0.7335 24 1 2.1878 -4.2504 0.9673 25 1 3.1377 -3.5679 -0.4207 26 1 -1.1355 -5.3546 -2.0461 27 1 0.1498 -5.4278 -3.2753 28 1 -0.7147 -7.7725 -1.5284 29 1 1.0027 -7.7208 -4.0372 30 1 1.6740 -7.6814 -2.3912 31 1 0.4742 -9.8186 -1.8822 32 1 1.6340 -9.9995 -3.2218 33 1 -2.3114 -9.3096 -2.4313 34 1 -2.8832 -9.1722 -4.1138 35 1 -2.4345 -6.9308 -3.1995 36 1 -1.2627 -7.3070 -4.4830 37 1 1.5095 -2.6324 -2.1897 38 1 -0.1980 -2.8806 -1.6249 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598032876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:26 Heat of formation + Delta-G solvation = -22.661810 kcal Electronic energy + Delta-G solvation = -18456.222491 eV Core-core repulsion = 15618.144420 eV Total energy + Delta-G solvation = -2838.078072 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.75910 -38.00482 -36.36463 -32.74650 -31.58129 -30.88795 -28.92863 -25.73438 -25.01519 -24.08262 -23.17107 -20.69726 -20.06851 -18.12040 -17.10562 -16.83685 -16.18814 -15.44799 -15.08988 -14.65030 -14.60353 -14.28369 -13.99312 -13.83323 -13.24358 -12.99800 -12.71918 -12.35690 -12.04984 -11.84883 -11.58981 -11.47038 -11.31558 -11.28946 -10.99945 -10.83212 -10.76090 -10.39847 -10.38040 -9.83407 -9.56386 -9.24708 -8.97387 -8.63203 -7.91273 -7.79708 -6.23298 -4.28953 1.69006 2.43283 3.11877 3.19447 3.28671 3.31901 3.52822 4.29231 4.51511 4.59661 4.67998 4.90111 5.01179 5.07363 5.12474 5.26634 5.34115 5.45977 5.54183 5.59361 5.73043 5.79212 5.87537 5.93495 6.00386 6.13220 6.20884 6.28846 6.32947 6.39871 6.52420 6.61059 6.75662 7.50307 7.74590 8.12967 8.48830 8.71305 8.75674 9.38338 10.86488 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.048757 B = 0.003432 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.143999 B = 8155.583176 C = 8466.360305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.064 0.936 9 C 0.035 3.965 10 C 0.098 3.902 11 N -0.644 5.644 12 C 0.530 3.470 13 O -0.564 6.564 14 C -0.128 4.128 15 C -0.077 4.077 16 C -0.122 4.122 17 C -0.070 4.070 18 S -0.287 6.287 19 C -0.076 4.076 20 C -0.119 4.119 21 C 0.097 3.903 22 H 0.264 0.736 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.131 -12.589 -7.229 14.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.015 3.985 10 C -0.024 4.024 11 N -0.377 5.377 12 C 0.320 3.680 13 O -0.446 6.446 14 C -0.168 4.168 15 C -0.096 4.096 16 C -0.160 4.160 17 C -0.218 4.218 18 S -0.061 6.061 19 C -0.224 4.224 20 C -0.157 4.157 21 C -0.025 4.025 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.088 -13.958 -7.791 16.281 hybrid contribution 0.305 1.866 0.805 2.056 sum -2.783 -12.092 -6.986 14.240 Atomic orbital electron populations 1.69956 1.06083 1.27073 1.49164 1.25031 0.94872 0.99443 0.94191 0.86478 0.80207 0.83268 0.77746 1.19543 1.20863 1.20849 1.20954 0.93068 0.89562 1.51969 0.91781 1.20391 0.94747 0.91191 0.92124 1.23332 0.94310 0.93184 0.91533 1.50067 1.42374 1.05007 1.40239 1.20106 0.83270 0.81073 0.83522 1.90596 1.58373 1.40747 1.54852 1.21609 0.99346 0.97086 0.98789 1.20865 0.94846 0.94453 0.99477 1.21888 0.99450 0.92502 1.02179 1.23425 0.98197 0.99344 1.00806 1.86750 1.09955 1.56025 1.53412 1.23401 0.97721 0.96676 1.04580 1.21801 0.98572 0.94576 1.00790 1.23667 0.99759 0.76962 1.02161 0.92659 0.91386 0.92540 0.90954 0.89006 0.89198 0.90346 0.91392 0.88564 0.89779 0.88108 0.89886 0.87947 0.90551 0.90509 0.90771 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.65 13.26 55.43 0.74 -22.92 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 19.71 29.54 -169.99 -5.02 14.69 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -12.92 8.83 -34.44 -0.30 -13.23 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.03 0.79 3.79 -91.12 -0.35 0.45 16 10 C 0.10 2.02 8.17 -8.49 -0.07 1.95 16 11 N -0.64 -12.59 3.69 -185.03 -0.68 -13.27 16 12 C 0.53 9.67 7.68 -10.98 -0.08 9.58 16 13 O -0.56 -11.58 14.76 5.56 0.08 -11.50 16 14 C -0.13 -1.76 4.97 -27.88 -0.14 -1.90 16 15 C -0.08 -0.95 1.60 -91.05 -0.15 -1.10 16 16 C -0.12 -1.52 4.83 -26.88 -0.13 -1.65 16 17 C -0.07 -0.80 6.46 37.22 0.24 -0.56 16 18 S -0.29 -3.29 22.33 -107.50 -2.40 -5.69 16 19 C -0.08 -0.72 6.45 37.21 0.24 -0.48 16 20 C -0.12 -1.17 5.05 -26.89 -0.14 -1.31 16 21 C 0.10 1.96 8.00 -8.36 -0.07 1.90 16 22 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 23 H 0.07 1.71 8.11 -51.93 -0.42 1.29 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 26 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.08 1.07 7.88 -51.93 -0.41 0.66 16 29 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 30 H 0.10 1.45 5.74 -51.93 -0.30 1.15 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.67 8.04 -51.93 -0.42 0.26 16 36 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 37 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 319.46 15.07 4.81 4.81 Total: -1.00 -27.46 319.46 -9.66 -37.11 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.15 Total: 1.48 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -1.04 Total: -4.71 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.05 Total: -36.19 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.40 Total: -5.69 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.46 -9.66 -37.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.451 kcal (2) G-P(sol) polarization free energy of solvation -27.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds