Wall clock time and date at job start Mon Mar 30 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99775 * 2 1 4 4 H 1.48498 * 109.47184 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46881 * 299.99770 * 3 2 1 6 6 H 1.48497 * 109.47353 * 59.99524 * 3 2 1 7 7 C 1.37871 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99979 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00382 * 359.97438 * 7 2 1 10 10 C 1.53500 * 114.21006 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98253 * 220.14993 * 10 9 7 12 12 C 1.34774 * 136.05240 * 207.08405 * 11 10 9 13 13 O 1.21279 * 120.00472 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00020 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47238 * 180.02562 * 14 12 11 16 16 C 1.52581 * 109.22575 * 295.59690 * 15 14 12 17 17 C 1.53118 * 109.94808 * 168.96275 * 16 15 14 18 18 S 1.81752 * 108.80579 * 63.08383 * 17 16 15 19 19 C 1.81745 * 102.22335 * 306.71527 * 18 17 16 20 20 C 1.52582 * 109.22737 * 174.40114 * 15 14 12 21 21 C 1.47068 * 87.88844 * 27.34268 * 11 10 9 22 22 H 0.96993 * 120.00376 * 0.02562 * 1 2 3 23 23 H 1.09005 * 113.28199 * 313.07196 * 9 7 2 24 24 H 1.08995 * 113.46360 * 105.37055 * 10 9 7 25 25 H 1.08999 * 113.51829 * 334.93630 * 10 9 7 26 26 H 1.09001 * 109.46953 * 299.99667 * 14 12 11 27 27 H 1.09000 * 109.47318 * 59.99264 * 14 12 11 28 28 H 1.08998 * 109.22125 * 54.99619 * 15 14 12 29 29 H 1.09000 * 109.38882 * 289.15284 * 16 15 14 30 30 H 1.08998 * 109.38999 * 48.85335 * 16 15 14 31 31 H 1.08999 * 109.60924 * 303.28088 * 17 16 15 32 32 H 1.08998 * 109.68193 * 182.93152 * 17 16 15 33 33 H 1.09007 * 109.57528 * 293.45994 * 19 18 17 34 34 H 1.08994 * 109.57718 * 173.07043 * 19 18 17 35 35 H 1.09005 * 109.38805 * 311.14339 * 20 15 14 36 36 H 1.08996 * 109.39091 * 70.84286 * 20 15 14 37 37 H 1.08998 * 113.46458 * 87.43503 * 21 11 10 38 38 H 1.08996 * 113.46737 * 217.87850 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0017 10 6 2.1489 -3.7442 0.0028 11 7 1.2074 -4.3602 -0.9443 12 6 0.8321 -5.6150 -1.2619 13 8 1.3283 -6.5604 -0.6866 14 6 -0.2042 -5.8436 -2.3319 15 6 -0.4466 -7.3454 -2.4948 16 6 0.8313 -8.0087 -3.0000 17 6 0.7005 -9.5316 -2.9091 18 16 -0.6472 -10.0703 -4.0031 19 6 -2.0318 -9.0323 -3.4477 20 6 -1.5931 -7.5658 -3.4771 21 6 0.8606 -3.0045 -1.3969 22 1 -0.4850 0.8400 -0.0004 23 1 0.4438 -2.5300 0.7335 24 1 2.1878 -4.2504 0.9673 25 1 3.1377 -3.5679 -0.4207 26 1 -1.1355 -5.3546 -2.0461 27 1 0.1498 -5.4278 -3.2753 28 1 -0.7147 -7.7725 -1.5284 29 1 1.0027 -7.7208 -4.0372 30 1 1.6740 -7.6814 -2.3912 31 1 0.4742 -9.8186 -1.8822 32 1 1.6340 -9.9995 -3.2218 33 1 -2.3114 -9.3096 -2.4313 34 1 -2.8832 -9.1722 -4.1138 35 1 -2.4345 -6.9308 -3.1995 36 1 -1.2627 -7.3070 -4.4830 37 1 1.5095 -2.6324 -2.1897 38 1 -0.1980 -2.8806 -1.6249 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598032876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:26 Heat of formation + Delta-G solvation = -36.498920 kcal Electronic energy + Delta-G solvation = -18456.822513 eV Core-core repulsion = 15618.144420 eV Total energy + Delta-G solvation = -2838.678094 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.25164 -39.38816 -37.62825 -34.64791 -32.45624 -32.13587 -30.43523 -27.32458 -26.68600 -25.36422 -24.05784 -22.20701 -21.21469 -19.65825 -18.74597 -18.03261 -17.61663 -16.85853 -16.57169 -16.28924 -15.69923 -15.32098 -15.27177 -14.88958 -14.38298 -14.22563 -14.01796 -13.72761 -13.38853 -13.26430 -13.13837 -12.82441 -12.74882 -12.59338 -12.35176 -12.25613 -12.17150 -11.75017 -11.46547 -11.22525 -11.04746 -10.76376 -10.57919 -10.41374 -9.52950 -8.69498 -8.16927 -6.27728 0.84176 1.46072 1.50114 1.57857 1.60135 1.67092 2.04329 2.46549 3.13601 3.49039 3.56215 3.71550 3.98039 4.04440 4.21917 4.24911 4.31715 4.37951 4.41776 4.52238 4.57261 4.63984 4.71125 4.74474 4.80192 4.81766 4.87989 4.98969 5.01063 5.03185 5.09596 5.28954 5.36924 5.60008 5.81783 6.23615 6.81052 6.95936 7.20373 7.42587 8.93161 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.048757 B = 0.003432 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.143999 B = 8155.583176 C = 8466.360305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.022 3.978 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.065 0.935 9 C 0.021 3.979 10 C 0.103 3.897 11 N -0.647 5.647 12 C 0.525 3.475 13 O -0.589 6.589 14 C -0.120 4.120 15 C -0.073 4.073 16 C -0.117 4.117 17 C -0.066 4.066 18 S -0.306 6.306 19 C -0.070 4.070 20 C -0.111 4.111 21 C 0.114 3.886 22 H 0.265 0.735 23 H 0.038 0.962 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 -12.602 -8.609 15.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.178 4.178 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.083 0.917 9 C 0.002 3.998 10 C -0.020 4.020 11 N -0.380 5.380 12 C 0.317 3.683 13 O -0.472 6.472 14 C -0.160 4.160 15 C -0.092 4.092 16 C -0.156 4.156 17 C -0.214 4.214 18 S -0.080 6.080 19 C -0.218 4.218 20 C -0.150 4.150 21 C -0.009 4.009 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.124 0.876 27 H 0.126 0.874 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.141 0.859 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.517 -13.989 -9.179 17.097 hybrid contribution 0.444 1.803 1.287 2.259 sum -3.072 -12.186 -7.892 14.840 Atomic orbital electron populations 1.70052 1.07346 1.27796 1.50377 1.25734 0.95570 1.02463 0.94043 0.85514 0.79198 0.79458 0.77532 1.18934 1.20461 1.21041 1.21243 0.93292 0.90591 1.51500 0.91710 1.20278 0.94579 0.91661 0.93298 1.23189 0.94565 0.92231 0.91982 1.50089 1.42362 1.05418 1.40174 1.20957 0.83486 0.79977 0.83890 1.90591 1.59332 1.41271 1.55958 1.21661 0.98220 0.98401 0.97676 1.20840 0.95693 0.93162 0.99500 1.21805 0.98622 0.93198 1.01959 1.23346 0.98817 0.98680 1.00525 1.86830 1.10818 1.56986 1.53413 1.23484 0.97256 0.95869 1.05185 1.21748 0.97981 0.95070 1.00214 1.23371 1.00065 0.76970 1.00447 0.92629 0.94344 0.92907 0.90084 0.87648 0.87427 0.91988 0.90593 0.91337 0.90494 0.87477 0.89661 0.85930 0.88799 0.89857 0.90087 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.14 13.26 21.45 0.28 -48.85 16 2 C 0.02 1.13 5.46 84.65 0.46 1.59 16 3 Si 0.96 40.10 29.54 68.60 2.03 42.12 16 4 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.53 -26.33 8.83 25.60 0.23 -26.10 16 8 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 9 C 0.02 0.97 3.79 -11.12 -0.04 0.93 16 10 C 0.10 4.22 8.17 83.19 0.68 4.90 16 11 N -0.65 -24.91 3.69 -857.72 -3.16 -28.07 16 12 C 0.52 18.71 7.68 87.66 0.67 19.39 16 13 O -0.59 -24.15 14.76 -3.02 -0.04 -24.20 16 14 C -0.12 -3.06 4.97 29.85 0.15 -2.91 16 15 C -0.07 -1.66 1.60 -11.07 -0.02 -1.68 16 16 C -0.12 -2.81 4.83 30.49 0.15 -2.67 16 17 C -0.07 -1.45 6.46 72.02 0.47 -0.99 16 18 S -0.31 -6.49 22.33 -56.49 -1.26 -7.75 16 19 C -0.07 -1.16 6.45 72.01 0.46 -0.69 16 20 C -0.11 -1.87 5.05 30.49 0.15 -1.71 16 21 C 0.11 4.52 8.00 83.27 0.67 5.19 16 22 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 23 H 0.04 1.99 8.11 -2.38 -0.02 1.97 16 24 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.08 3.16 8.10 -2.39 -0.02 3.14 16 26 H 0.11 2.45 8.07 -2.39 -0.02 2.43 16 27 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.06 1.63 7.88 -2.39 -0.02 1.61 16 29 H 0.08 1.68 8.05 -2.39 -0.02 1.66 16 30 H 0.07 2.05 5.74 -2.39 -0.01 2.04 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.09 1.30 8.04 -2.38 -0.02 1.28 16 36 H 0.08 1.34 8.05 -2.39 -0.02 1.32 16 37 H 0.08 3.11 8.10 -2.39 -0.02 3.09 16 38 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -58.15 319.46 2.89 -55.26 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 1.02 Total: 16.25 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 4.03 Total: -4.76 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -2.88 Total: -76.92 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.04 Total: -24.20 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 16 Polarization: -6.49 SS G_CDS: -1.26 Total: -7.75 kcal Total: -58.15 2.89 -55.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.762 kcal (2) G-P(sol) polarization free energy of solvation -58.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds