Wall clock time and date at job start Mon Mar 30 2020 05:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47323 * 2 1 4 4 C 1.34776 * 119.99966 * 173.66693 * 3 2 1 5 5 O 1.21288 * 120.00051 * 5.13942 * 4 3 2 6 6 C 1.50704 * 120.00208 * 185.13424 * 4 3 2 7 7 S 1.81000 * 109.47338 * 180.02562 * 6 4 3 8 8 C 1.76195 * 99.99893 * 180.02562 * 7 6 4 9 9 H 1.08005 * 120.00065 * 359.97438 * 8 7 6 10 10 C 1.38801 * 120.00037 * 179.97438 * 8 7 6 11 11 N 1.31635 * 120.00152 * 179.97438 * 10 8 7 12 12 Si 1.86806 * 119.99840 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.47007 * 90.00013 * 12 10 8 14 14 H 1.48496 * 109.47052 * 209.99802 * 12 10 8 15 15 H 1.48501 * 109.46964 * 330.00068 * 12 10 8 16 16 C 1.52999 * 109.47144 * 120.00207 * 2 1 3 17 17 C 1.53010 * 117.49905 * 13.74294 * 16 2 1 18 18 C 1.53006 * 117.49882 * 305.08411 * 16 2 1 19 19 C 1.52998 * 109.47124 * 239.99585 * 2 1 3 20 20 C 1.53008 * 117.49789 * 123.06090 * 19 2 1 21 21 C 1.53003 * 117.49714 * 54.40506 * 19 2 1 22 22 H 1.08995 * 109.46485 * 300.00292 * 1 2 3 23 23 H 1.08998 * 109.46617 * 60.00071 * 1 2 3 24 24 H 1.08995 * 109.47193 * 179.97438 * 1 2 3 25 25 H 0.97000 * 120.00031 * 353.66887 * 3 2 1 26 26 H 1.09007 * 109.46465 * 300.00137 * 6 4 3 27 27 H 1.08997 * 109.47178 * 59.99751 * 6 4 3 28 28 H 0.96996 * 119.99630 * 180.02562 * 11 10 8 29 29 H 1.09002 * 115.55588 * 159.41168 * 16 2 1 30 30 H 1.09001 * 117.49349 * 359.97438 * 17 16 2 31 31 H 1.09000 * 117.49751 * 145.02046 * 17 16 2 32 32 H 1.08998 * 117.49851 * 214.98247 * 18 16 2 33 33 H 1.09006 * 117.49264 * 359.97438 * 18 16 2 34 34 H 1.09001 * 115.55254 * 268.73825 * 19 2 1 35 35 H 1.08989 * 117.49562 * 0.02562 * 20 19 2 36 36 H 1.09002 * 117.49352 * 145.02334 * 20 19 2 37 37 H 1.09004 * 117.49827 * 214.98160 * 21 19 2 38 38 H 1.09003 * 117.49717 * 359.97407 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3368 1.6297 0.1288 5 8 4.1279 0.7107 0.1509 6 6 3.8280 3.0497 0.2451 7 16 5.6311 3.0534 0.4031 8 6 5.9245 4.7868 0.5192 9 1 5.0958 5.4785 0.4823 10 6 7.2207 5.2636 0.6580 11 7 7.4400 6.5586 0.7442 12 14 8.6540 4.0672 0.7225 13 1 9.1565 3.8221 -0.6533 14 1 9.7427 4.6434 1.5518 15 1 8.2020 2.7851 1.3202 16 6 2.0400 -0.7213 1.2492 17 6 1.0326 -1.5533 2.0454 18 6 1.5401 -0.2226 2.6066 19 6 2.0400 -0.7213 -1.2492 20 6 2.9736 0.0541 -2.1811 21 6 1.5307 -0.2304 -2.6058 22 1 -0.3632 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.3929 2.1167 -0.0926 26 1 3.5405 3.6077 -0.6461 27 1 3.3849 3.5165 1.1248 28 1 8.3458 6.8917 0.8408 29 1 3.0647 -1.0890 1.1945 30 1 0.0064 -1.5864 1.6794 31 1 1.3946 -2.4681 2.5147 32 1 2.2357 -0.2624 3.4447 33 1 0.8481 0.6197 2.6095 34 1 2.2172 -1.7908 -1.1351 35 1 3.2247 1.0778 -1.9039 36 1 3.7647 -0.5054 -2.6803 37 1 1.3732 -0.9768 -3.3844 38 1 0.8320 0.6063 -2.6083 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598381963.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:02 Heat of formation + Delta-G solvation = 20.244810 kcal Electronic energy + Delta-G solvation = -18912.616020 eV Core-core repulsion = 16076.398519 eV Total energy + Delta-G solvation = -2836.217501 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.60260 -37.68329 -36.32905 -33.55669 -32.42680 -30.62764 -28.64533 -25.65300 -25.34197 -22.48454 -22.14780 -21.18409 -20.83098 -18.86976 -17.83362 -16.82355 -16.30550 -15.99856 -15.05794 -14.95962 -14.64594 -14.21822 -13.87555 -13.42104 -13.19102 -12.83045 -12.75712 -12.39094 -12.11610 -11.56312 -11.40324 -11.27467 -11.25124 -11.14379 -11.00099 -10.60295 -10.47535 -10.39741 -10.03943 -9.95171 -9.83356 -9.17517 -8.99614 -8.85767 -8.47718 -6.89318 -6.28015 -3.99038 2.78571 3.06287 3.29197 3.33949 3.50923 3.61662 3.86038 3.98121 4.33926 4.47608 4.73177 4.73986 4.82923 5.02217 5.03069 5.10912 5.11338 5.17273 5.29676 5.32435 5.39505 5.54448 5.65705 5.71470 5.78200 5.81164 5.82695 6.00039 6.04099 6.08938 6.10539 6.18584 6.33568 6.35281 6.72865 7.73304 7.95198 8.42723 8.62416 9.18417 10.81373 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028126 B = 0.004976 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.269871 B = 5625.131627 C = 5905.394033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.240 3.760 3 N -0.731 5.731 4 C 0.535 3.465 5 O -0.505 6.505 6 C -0.126 4.126 7 S -0.139 6.139 8 C -0.522 4.522 9 H 0.087 0.913 10 C 0.096 3.904 11 N -0.881 5.881 12 Si 0.856 3.144 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.235 1.235 16 C -0.147 4.147 17 C -0.184 4.184 18 C -0.172 4.172 19 C -0.149 4.149 20 C -0.153 4.153 21 C -0.187 4.187 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.396 0.604 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.270 0.730 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.161 -14.084 -1.756 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.153 3.847 3 N -0.385 5.385 4 C 0.321 3.679 5 O -0.379 6.379 6 C -0.277 4.277 7 S 0.087 5.913 8 C -0.669 4.669 9 H 0.105 0.895 10 C -0.113 4.113 11 N -0.518 5.518 12 Si 0.681 3.319 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.159 1.159 16 C -0.166 4.166 17 C -0.221 4.221 18 C -0.209 4.209 19 C -0.168 4.168 20 C -0.190 4.190 21 C -0.224 4.224 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.230 0.770 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.136 0.864 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.702 -15.461 -1.681 21.402 hybrid contribution -0.396 1.271 -0.014 1.332 sum -15.098 -14.190 -1.694 20.789 Atomic orbital electron populations 1.22164 0.93634 1.03202 1.02302 1.19095 0.92532 0.81088 0.91954 1.46193 1.07924 1.07508 1.76868 1.20049 0.81833 0.90880 0.75172 1.90695 1.54234 1.45807 1.47130 1.23321 1.03081 0.95846 1.05440 1.84749 0.98442 1.11787 1.96298 1.22339 0.97329 0.89276 1.57973 0.89482 1.24709 0.98300 0.95027 0.93226 1.69943 1.21981 1.12133 1.47747 0.86742 0.82514 0.83000 0.79625 1.19235 1.19986 1.15924 1.22569 0.99926 1.02918 0.91169 1.23152 0.99319 0.95204 1.04447 1.22862 1.03615 0.97275 0.97125 1.22487 1.05103 0.99282 0.89905 1.22990 0.92178 1.02065 1.01781 1.22999 0.98532 1.03277 0.97548 0.91863 0.91786 0.90526 0.76989 0.88920 0.88696 0.91974 0.86411 0.88417 0.89100 0.88973 0.89039 0.87638 0.88366 0.89275 0.89331 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 7.03 37.16 0.26 -1.01 16 2 C 0.24 2.68 0.71 -131.82 -0.09 2.58 16 3 N -0.73 -9.10 4.46 -47.61 -0.21 -9.32 16 4 C 0.53 9.07 5.11 -10.98 -0.06 9.01 16 5 O -0.51 -10.12 12.32 5.55 0.07 -10.05 16 6 C -0.13 -2.42 6.16 36.01 0.22 -2.19 16 7 S -0.14 -3.49 18.55 -107.50 -1.99 -5.49 16 8 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 9 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 10 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 11 N -0.88 -26.70 13.97 55.49 0.78 -25.92 16 12 Si 0.86 21.86 27.74 -169.99 -4.71 17.14 16 13 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 16 C -0.15 -1.80 4.07 -90.61 -0.37 -2.17 16 17 C -0.18 -1.76 9.66 -26.68 -0.26 -2.02 16 18 C -0.17 -1.93 9.84 -26.69 -0.26 -2.20 16 19 C -0.15 -1.77 4.83 -90.62 -0.44 -2.21 16 20 C -0.15 -2.12 8.33 -26.69 -0.22 -2.35 16 21 C -0.19 -1.99 9.68 -26.69 -0.26 -2.25 16 22 H 0.06 0.48 6.96 -51.93 -0.36 0.12 16 23 H 0.06 0.47 6.96 -51.93 -0.36 0.11 16 24 H 0.08 0.56 6.74 -51.93 -0.35 0.21 16 25 H 0.40 3.98 8.49 -40.82 -0.35 3.63 16 26 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 27 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 28 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.12 1.81 7.18 -51.93 -0.37 1.44 16 30 H 0.10 0.78 5.89 -51.93 -0.31 0.47 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.09 0.96 7.29 -51.93 -0.38 0.58 16 34 H 0.11 1.25 8.07 -51.93 -0.42 0.83 16 35 H 0.10 1.57 5.11 -51.94 -0.27 1.30 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.88 7.25 -51.93 -0.38 0.50 16 LS Contribution 314.05 15.07 4.73 4.73 Total: -1.00 -32.21 314.05 -8.25 -40.46 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.65 Total: 5.26 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -1.26 Total: -16.82 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.56 Total: -35.24 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.07 Total: -10.05 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.21 -8.25 -40.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598381963.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.709 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds