Wall clock time and date at job start Mon Mar 30 2020 05:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47323 * 2 1 4 4 C 1.34776 * 119.99966 * 173.66693 * 3 2 1 5 5 O 1.21288 * 120.00051 * 5.13942 * 4 3 2 6 6 C 1.50704 * 120.00208 * 185.13424 * 4 3 2 7 7 S 1.81000 * 109.47338 * 180.02562 * 6 4 3 8 8 C 1.76195 * 99.99893 * 180.02562 * 7 6 4 9 9 H 1.08005 * 120.00065 * 359.97438 * 8 7 6 10 10 C 1.38801 * 120.00037 * 179.97438 * 8 7 6 11 11 N 1.31635 * 120.00152 * 179.97438 * 10 8 7 12 12 Si 1.86806 * 119.99840 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.47007 * 90.00013 * 12 10 8 14 14 H 1.48496 * 109.47052 * 209.99802 * 12 10 8 15 15 H 1.48501 * 109.46964 * 330.00068 * 12 10 8 16 16 C 1.52999 * 109.47144 * 120.00207 * 2 1 3 17 17 C 1.53010 * 117.49905 * 13.74294 * 16 2 1 18 18 C 1.53006 * 117.49882 * 305.08411 * 16 2 1 19 19 C 1.52998 * 109.47124 * 239.99585 * 2 1 3 20 20 C 1.53008 * 117.49789 * 123.06090 * 19 2 1 21 21 C 1.53003 * 117.49714 * 54.40506 * 19 2 1 22 22 H 1.08995 * 109.46485 * 300.00292 * 1 2 3 23 23 H 1.08998 * 109.46617 * 60.00071 * 1 2 3 24 24 H 1.08995 * 109.47193 * 179.97438 * 1 2 3 25 25 H 0.97000 * 120.00031 * 353.66887 * 3 2 1 26 26 H 1.09007 * 109.46465 * 300.00137 * 6 4 3 27 27 H 1.08997 * 109.47178 * 59.99751 * 6 4 3 28 28 H 0.96996 * 119.99630 * 180.02562 * 11 10 8 29 29 H 1.09002 * 115.55588 * 159.41168 * 16 2 1 30 30 H 1.09001 * 117.49349 * 359.97438 * 17 16 2 31 31 H 1.09000 * 117.49751 * 145.02046 * 17 16 2 32 32 H 1.08998 * 117.49851 * 214.98247 * 18 16 2 33 33 H 1.09006 * 117.49264 * 359.97438 * 18 16 2 34 34 H 1.09001 * 115.55254 * 268.73825 * 19 2 1 35 35 H 1.08989 * 117.49562 * 0.02562 * 20 19 2 36 36 H 1.09002 * 117.49352 * 145.02334 * 20 19 2 37 37 H 1.09004 * 117.49827 * 214.98160 * 21 19 2 38 38 H 1.09003 * 117.49717 * 359.97407 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3368 1.6297 0.1288 5 8 4.1279 0.7107 0.1509 6 6 3.8280 3.0497 0.2451 7 16 5.6311 3.0534 0.4031 8 6 5.9245 4.7868 0.5192 9 1 5.0958 5.4785 0.4823 10 6 7.2207 5.2636 0.6580 11 7 7.4400 6.5586 0.7442 12 14 8.6540 4.0672 0.7225 13 1 9.1565 3.8221 -0.6533 14 1 9.7427 4.6434 1.5518 15 1 8.2020 2.7851 1.3202 16 6 2.0400 -0.7213 1.2492 17 6 1.0326 -1.5533 2.0454 18 6 1.5401 -0.2226 2.6066 19 6 2.0400 -0.7213 -1.2492 20 6 2.9736 0.0541 -2.1811 21 6 1.5307 -0.2304 -2.6058 22 1 -0.3632 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.3929 2.1167 -0.0926 26 1 3.5405 3.6077 -0.6461 27 1 3.3849 3.5165 1.1248 28 1 8.3458 6.8917 0.8408 29 1 3.0647 -1.0890 1.1945 30 1 0.0064 -1.5864 1.6794 31 1 1.3946 -2.4681 2.5147 32 1 2.2357 -0.2624 3.4447 33 1 0.8481 0.6197 2.6095 34 1 2.2172 -1.7908 -1.1351 35 1 3.2247 1.0778 -1.9039 36 1 3.7647 -0.5054 -2.6803 37 1 1.3732 -0.9768 -3.3844 38 1 0.8320 0.6063 -2.6083 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598381963.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:01 Heat of formation + Delta-G solvation = -0.160423 kcal Electronic energy + Delta-G solvation = -18913.500857 eV Core-core repulsion = 16076.398519 eV Total energy + Delta-G solvation = -2837.102338 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.69133 -38.85718 -37.26599 -34.72839 -34.64956 -31.75238 -29.88086 -27.86062 -26.23963 -23.33231 -23.10714 -22.11043 -22.09145 -19.91207 -19.86809 -17.80041 -17.68872 -17.19168 -17.04172 -16.16489 -15.92492 -15.63869 -15.01107 -14.98210 -14.68654 -14.27671 -13.58669 -13.55137 -13.34595 -13.09183 -13.01559 -12.61096 -12.47579 -12.23402 -12.19282 -12.02230 -11.87867 -11.45530 -11.33560 -11.18178 -11.00731 -10.87373 -10.53462 -10.43523 -9.98316 -8.98353 -8.52691 -6.22330 0.99699 1.29535 1.45657 1.55942 1.71020 2.22342 2.26561 2.70993 2.85729 2.93683 3.05287 3.58640 3.86675 3.88939 4.02879 4.12917 4.18582 4.23120 4.27482 4.31158 4.43860 4.47562 4.64531 4.76967 4.81818 4.94407 4.96027 5.05834 5.12728 5.23709 5.27587 5.28677 5.31868 5.42850 5.68360 5.69722 6.10171 6.61689 6.92838 7.36580 8.60028 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028126 B = 0.004976 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.269871 B = 5625.131627 C = 5905.394033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.239 3.761 3 N -0.709 5.709 4 C 0.541 3.459 5 O -0.540 6.540 6 C -0.114 4.114 7 S -0.170 6.170 8 C -0.530 4.530 9 H 0.060 0.940 10 C 0.047 3.953 11 N -0.918 5.918 12 Si 0.914 3.086 13 H -0.262 1.262 14 H -0.259 1.259 15 H -0.238 1.238 16 C -0.168 4.168 17 C -0.155 4.155 18 C -0.179 4.179 19 C -0.149 4.149 20 C -0.186 4.186 21 C -0.155 4.155 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.411 0.589 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.277 0.723 29 H 0.078 0.922 30 H 0.125 0.875 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.643 -15.561 -1.981 24.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.154 3.846 3 N -0.363 5.363 4 C 0.327 3.673 5 O -0.416 6.416 6 C -0.266 4.266 7 S 0.057 5.943 8 C -0.678 4.678 9 H 0.078 0.922 10 C -0.158 4.158 11 N -0.556 5.556 12 Si 0.736 3.264 13 H -0.187 1.187 14 H -0.183 1.183 15 H -0.162 1.162 16 C -0.188 4.188 17 C -0.192 4.192 18 C -0.217 4.217 19 C -0.168 4.168 20 C -0.224 4.224 21 C -0.192 4.192 22 H 0.093 0.907 23 H 0.096 0.904 24 H 0.111 0.889 25 H 0.248 0.752 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.143 0.857 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.123 0.877 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.232 -16.928 -1.908 24.231 hybrid contribution 0.261 1.714 0.042 1.735 sum -16.971 -15.214 -1.865 22.868 Atomic orbital electron populations 1.22173 0.90302 1.04693 1.03601 1.19300 0.94741 0.79496 0.91083 1.46000 1.06323 1.09133 1.74874 1.19617 0.83225 0.89200 0.75279 1.90696 1.55534 1.46261 1.49149 1.23324 0.98367 0.98249 1.06614 1.84657 1.04382 1.08823 1.96459 1.22496 0.96800 0.90998 1.57489 0.92190 1.25545 1.00806 0.96563 0.92921 1.70019 1.23027 1.13745 1.48812 0.85879 0.79736 0.80818 0.79999 1.18718 1.18298 1.16156 1.22438 0.98998 1.05025 0.92305 1.23254 0.99707 0.94346 1.01931 1.22904 1.03780 0.99050 0.95929 1.22555 1.04308 0.99090 0.90822 1.22877 0.94004 1.01003 1.04510 1.23080 0.95783 1.03526 0.96800 0.90733 0.90391 0.88899 0.75199 0.87637 0.87550 0.91378 0.90350 0.85740 0.88721 0.90476 0.87806 0.87743 0.90646 0.90756 0.87700 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 7.03 71.98 0.51 -1.26 16 2 C 0.24 4.79 0.71 3.61 0.00 4.79 16 3 N -0.71 -16.38 4.46 -422.92 -1.89 -18.27 16 4 C 0.54 18.19 5.11 87.66 0.45 18.63 16 5 O -0.54 -22.05 12.32 -3.05 -0.04 -22.09 16 6 C -0.11 -4.36 6.16 71.24 0.44 -3.92 16 7 S -0.17 -8.64 18.55 -56.49 -1.05 -9.69 16 8 C -0.53 -31.24 10.04 67.95 0.68 -30.56 16 9 H 0.06 3.73 8.03 -2.91 -0.02 3.71 16 10 C 0.05 2.79 5.50 84.86 0.47 3.25 16 11 N -0.92 -56.44 13.97 21.65 0.30 -56.14 16 12 Si 0.91 45.57 27.74 68.60 1.90 47.47 16 13 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 15 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 16 C -0.17 -3.93 4.07 -10.79 -0.04 -3.97 16 17 C -0.16 -2.54 9.66 30.62 0.30 -2.24 16 18 C -0.18 -3.74 9.84 30.62 0.30 -3.44 16 19 C -0.15 -3.30 4.83 -10.79 -0.05 -3.35 16 20 C -0.19 -5.12 8.33 30.62 0.26 -4.86 16 21 C -0.16 -2.87 9.68 30.62 0.30 -2.57 16 22 H 0.07 0.76 6.96 -2.39 -0.02 0.74 16 23 H 0.08 0.75 6.96 -2.39 -0.02 0.73 16 24 H 0.09 0.86 6.74 -2.39 -0.02 0.85 16 25 H 0.41 7.07 8.49 -92.71 -0.79 6.28 16 26 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 27 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 28 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.08 2.48 7.18 -2.39 -0.02 2.46 16 30 H 0.12 1.39 5.89 -2.39 -0.01 1.38 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.10 1.88 7.29 -2.38 -0.02 1.87 16 34 H 0.10 2.34 8.07 -2.39 -0.02 2.32 16 35 H 0.08 2.41 5.11 -2.39 -0.01 2.40 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.10 1.63 7.25 -2.39 -0.02 1.62 16 Total: -1.00 -72.05 314.05 3.07 -68.97 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.24 Total: 19.25 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 3.60 Total: -29.51 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -1.58 Total: -74.41 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.04 Total: -22.09 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.47 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.05 Total: -9.69 kcal Total: -72.05 3.07 -68.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598381963.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.813 kcal (2) G-P(sol) polarization free energy of solvation -72.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds