Wall clock time and date at job start Mon Mar 30 2020 04:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29414 * 125.69901 * 2 1 4 4 N 1.26392 * 116.47766 * 180.02562 * 3 2 1 5 5 C 1.29417 * 116.47725 * 359.97438 * 4 3 2 6 6 C 1.50695 * 125.70056 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.46915 * 89.97747 * 6 5 4 8 8 C 1.46507 * 119.99865 * 90.00360 * 7 6 5 9 9 C 1.34777 * 120.00650 * 270.00453 * 7 6 5 10 10 O 1.21282 * 119.99571 * 5.00628 * 9 7 6 11 11 C 1.50697 * 120.00323 * 185.01652 * 9 7 6 12 12 H 1.08996 * 109.47437 * 46.22221 * 11 9 7 13 13 C 1.52997 * 109.46816 * 286.21747 * 11 9 7 14 14 C 1.50704 * 109.46985 * 166.22058 * 11 9 7 15 15 H 1.07997 * 120.00224 * 359.97438 * 14 11 9 16 16 C 1.37875 * 120.00055 * 180.02562 * 14 11 9 17 17 N 1.31521 * 119.99752 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00374 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47232 * 89.99194 * 18 16 14 20 20 H 1.48499 * 109.47436 * 209.99634 * 18 16 14 21 21 H 1.48508 * 109.46856 * 329.99505 * 18 16 14 22 22 S 1.71214 * 125.69506 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47364 * 269.95970 * 1 2 3 24 24 H 1.09006 * 109.46545 * 29.95975 * 1 2 3 25 25 H 1.08994 * 109.47208 * 149.95620 * 1 2 3 26 26 H 1.09001 * 109.47357 * 209.98142 * 6 5 4 27 27 H 1.09005 * 109.47271 * 329.97938 * 6 5 4 28 28 H 1.09001 * 109.47196 * 87.50265 * 8 7 6 29 29 H 1.08995 * 109.47133 * 207.49832 * 8 7 6 30 30 H 1.08992 * 109.47092 * 327.49800 * 8 7 6 31 31 H 1.09007 * 109.47209 * 169.53564 * 13 11 9 32 32 H 1.09000 * 109.47357 * 289.52894 * 13 11 9 33 33 H 1.08995 * 109.47559 * 49.53595 * 13 11 9 34 34 H 0.97000 * 119.99902 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5098 0.8484 -0.0005 5 6 3.8937 -0.3875 -0.0004 6 6 5.3232 -0.8643 -0.0004 7 7 5.7866 -1.0182 1.3807 8 6 5.6169 -2.2988 2.0719 9 6 6.3690 0.0182 2.0157 10 8 6.4279 1.1034 1.4774 11 6 6.9471 -0.1714 3.3944 12 1 7.5428 -1.0839 3.4163 13 6 5.8109 -0.2794 4.4134 14 6 7.8208 1.0071 3.7392 15 1 7.9453 1.8126 3.0307 16 6 8.4620 1.0565 4.9588 17 7 8.3107 0.0753 5.8214 18 14 9.5443 2.5177 5.3866 19 1 8.7258 3.5614 6.0543 20 1 10.6292 2.0792 6.3009 21 1 10.1384 3.0740 4.1444 22 16 2.5060 -1.3905 -0.0006 23 1 -0.3634 -0.0007 1.0276 24 1 -0.3633 0.8904 -0.5133 25 1 -0.3633 -0.8895 -0.5145 26 1 5.3863 -1.8237 -0.5139 27 1 5.9495 -0.1352 -0.5147 28 1 6.4737 -2.9399 1.8646 29 1 5.5444 -2.1254 3.1455 30 1 4.7066 -2.7838 1.7199 31 1 6.2138 -0.5998 5.3743 32 1 5.3309 0.6926 4.5267 33 1 5.0787 -1.0079 4.0654 34 1 8.7615 0.1103 6.6796 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598515153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:42 Heat of formation + Delta-G solvation = 33.651205 kcal Electronic energy + Delta-G solvation = -18491.391171 eV Core-core repulsion = 15552.214672 eV Total energy + Delta-G solvation = -2939.176499 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.22016 -39.12482 -35.25625 -33.91438 -33.12094 -31.00289 -29.65512 -27.06655 -26.05667 -25.13930 -24.46139 -22.04752 -19.85900 -19.33670 -18.49367 -16.47757 -15.98068 -15.89942 -15.62997 -15.11934 -14.50485 -14.30036 -13.47041 -13.42782 -13.30059 -13.07501 -12.83004 -12.61176 -12.39649 -12.20124 -11.83953 -11.18794 -10.98251 -10.71182 -10.50474 -10.45420 -10.27403 -10.06058 -9.96804 -9.77711 -9.64176 -8.96854 -8.57556 -8.34835 -8.28848 -6.03310 -4.05027 0.42622 0.89460 1.34299 2.61808 3.35607 3.41113 3.47346 3.59776 3.64506 4.01663 4.48143 4.52017 4.80383 5.01678 5.14779 5.31198 5.36925 5.39497 5.48160 5.58892 5.67361 5.80652 5.95628 6.10508 6.62165 6.79595 6.90923 6.94088 7.43542 7.71618 7.91790 8.03248 8.34901 8.66463 9.02639 9.16961 9.60039 11.05267 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.031701 B = 0.004834 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.038382 B = 5790.490596 C = 5988.895619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.024 4.024 3 N -0.262 5.262 4 N -0.231 5.231 5 C -0.017 4.017 6 C 0.194 3.806 7 N -0.628 5.628 8 C 0.069 3.931 9 C 0.518 3.482 10 O -0.520 6.520 11 C 0.035 3.965 12 H 0.051 0.949 13 C -0.132 4.132 14 C -0.501 4.501 15 H 0.073 0.927 16 C 0.060 3.940 17 N -0.897 5.897 18 Si 0.900 3.100 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.272 1.272 22 S 0.145 5.855 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.113 0.887 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.036 0.964 33 H 0.017 0.983 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.339 -10.001 -10.295 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.303 4.303 3 N -0.100 5.100 4 N -0.068 5.068 5 C -0.298 4.298 6 C 0.066 3.934 7 N -0.366 5.366 8 C -0.074 4.074 9 C 0.309 3.691 10 O -0.393 6.393 11 C 0.013 3.987 12 H 0.069 0.931 13 C -0.189 4.189 14 C -0.540 4.540 15 H 0.091 0.909 16 C -0.141 4.141 17 N -0.536 5.536 18 Si 0.728 3.272 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.197 1.197 22 S 0.387 5.613 23 H 0.108 0.892 24 H 0.110 0.890 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.131 0.869 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.035 0.965 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.148 -9.063 -10.392 19.053 hybrid contribution 0.454 0.711 0.384 0.927 sum -12.693 -8.352 -10.008 18.195 Atomic orbital electron populations 1.20347 0.84172 1.04401 1.04248 1.29245 1.04149 0.91905 1.05011 1.71515 0.97286 1.26832 1.14393 1.71504 1.05585 1.17019 1.12690 1.30067 1.03489 0.92239 1.04042 1.19762 0.85136 1.01938 0.86614 1.48284 1.61843 1.13949 1.12506 1.22079 1.00378 0.84805 1.00149 1.22206 0.75323 0.82384 0.89144 1.90592 1.56184 1.24936 1.67561 1.18869 0.94516 0.99980 0.85288 0.93119 1.21865 0.96049 0.98730 1.02296 1.21126 1.26430 1.04844 1.01552 0.90904 1.24929 0.96653 0.96389 0.96123 1.69893 1.43900 1.31781 1.08071 0.86450 0.79947 0.82538 0.78287 1.20656 1.21296 1.19724 1.83444 0.98785 1.12798 1.66240 0.89235 0.88958 0.89895 0.88553 0.86883 0.92566 0.88589 0.92666 0.89320 0.94491 0.96465 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.49 36.01 0.38 -0.18 16 2 C -0.02 -0.31 7.53 -13.29 -0.10 -0.41 16 3 N -0.26 -4.57 11.66 32.58 0.38 -4.20 16 4 N -0.23 -4.47 11.66 32.58 0.38 -4.09 16 5 C -0.02 -0.27 7.11 -13.30 -0.09 -0.36 16 6 C 0.19 2.91 5.98 -5.20 -0.03 2.88 16 7 N -0.63 -11.12 2.86 -182.96 -0.52 -11.64 16 8 C 0.07 0.95 9.85 59.85 0.59 1.54 16 9 C 0.52 12.07 6.90 -10.99 -0.08 12.00 16 10 O -0.52 -13.99 15.20 5.56 0.08 -13.90 16 11 C 0.03 0.87 1.82 -92.92 -0.17 0.70 16 12 H 0.05 1.27 7.72 -51.93 -0.40 0.87 16 13 C -0.13 -3.09 8.37 37.16 0.31 -2.78 16 14 C -0.50 -14.40 8.33 -34.44 -0.29 -14.68 16 15 H 0.07 2.23 6.84 -52.49 -0.36 1.87 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 17 N -0.90 -25.18 11.46 55.43 0.64 -24.55 16 18 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 22 S 0.14 1.64 23.04 -107.50 -2.48 -0.84 16 23 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.10 1.01 8.07 -51.93 -0.42 0.59 16 27 H 0.11 1.88 7.50 -51.93 -0.39 1.50 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 1.49 4.19 -51.93 -0.22 1.27 16 30 H 0.05 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.09 2.21 6.43 -51.93 -0.33 1.88 16 32 H 0.04 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.02 0.33 5.51 -51.93 -0.29 0.05 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 301.74 15.07 4.55 4.55 Total: -1.00 -34.84 301.74 -5.64 -40.49 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -4.07 Total: -3.22 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 0.43 Total: 0.28 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.87 Total: -44.47 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.08 Total: -13.90 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.48 Total: -0.84 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.84 -5.64 -40.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598515153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.137 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds