Wall clock time and date at job start Mon Mar 30 2020 04:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29414 * 125.69901 * 2 1 4 4 N 1.26392 * 116.47766 * 180.02562 * 3 2 1 5 5 C 1.29417 * 116.47725 * 359.97438 * 4 3 2 6 6 C 1.50695 * 125.70056 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.46915 * 89.97747 * 6 5 4 8 8 C 1.46507 * 119.99865 * 90.00360 * 7 6 5 9 9 C 1.34777 * 120.00650 * 270.00453 * 7 6 5 10 10 O 1.21282 * 119.99571 * 5.00628 * 9 7 6 11 11 C 1.50697 * 120.00323 * 185.01652 * 9 7 6 12 12 H 1.08996 * 109.47437 * 46.22221 * 11 9 7 13 13 C 1.52997 * 109.46816 * 286.21747 * 11 9 7 14 14 C 1.50704 * 109.46985 * 166.22058 * 11 9 7 15 15 H 1.07997 * 120.00224 * 359.97438 * 14 11 9 16 16 C 1.37875 * 120.00055 * 180.02562 * 14 11 9 17 17 N 1.31521 * 119.99752 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00374 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47232 * 89.99194 * 18 16 14 20 20 H 1.48499 * 109.47436 * 209.99634 * 18 16 14 21 21 H 1.48508 * 109.46856 * 329.99505 * 18 16 14 22 22 S 1.71214 * 125.69506 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47364 * 269.95970 * 1 2 3 24 24 H 1.09006 * 109.46545 * 29.95975 * 1 2 3 25 25 H 1.08994 * 109.47208 * 149.95620 * 1 2 3 26 26 H 1.09001 * 109.47357 * 209.98142 * 6 5 4 27 27 H 1.09005 * 109.47271 * 329.97938 * 6 5 4 28 28 H 1.09001 * 109.47196 * 87.50265 * 8 7 6 29 29 H 1.08995 * 109.47133 * 207.49832 * 8 7 6 30 30 H 1.08992 * 109.47092 * 327.49800 * 8 7 6 31 31 H 1.09007 * 109.47209 * 169.53564 * 13 11 9 32 32 H 1.09000 * 109.47357 * 289.52894 * 13 11 9 33 33 H 1.08995 * 109.47559 * 49.53595 * 13 11 9 34 34 H 0.97000 * 119.99902 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5098 0.8484 -0.0005 5 6 3.8937 -0.3875 -0.0004 6 6 5.3232 -0.8643 -0.0004 7 7 5.7866 -1.0182 1.3807 8 6 5.6169 -2.2988 2.0719 9 6 6.3690 0.0182 2.0157 10 8 6.4279 1.1034 1.4774 11 6 6.9471 -0.1714 3.3944 12 1 7.5428 -1.0839 3.4163 13 6 5.8109 -0.2794 4.4134 14 6 7.8208 1.0071 3.7392 15 1 7.9453 1.8126 3.0307 16 6 8.4620 1.0565 4.9588 17 7 8.3107 0.0753 5.8214 18 14 9.5443 2.5177 5.3866 19 1 8.7258 3.5614 6.0543 20 1 10.6292 2.0792 6.3009 21 1 10.1384 3.0740 4.1444 22 16 2.5060 -1.3905 -0.0006 23 1 -0.3634 -0.0007 1.0276 24 1 -0.3633 0.8904 -0.5133 25 1 -0.3633 -0.8895 -0.5145 26 1 5.3863 -1.8237 -0.5139 27 1 5.9495 -0.1352 -0.5147 28 1 6.4737 -2.9399 1.8646 29 1 5.5444 -2.1254 3.1455 30 1 4.7066 -2.7838 1.7199 31 1 6.2138 -0.5998 5.3743 32 1 5.3309 0.6926 4.5267 33 1 5.0787 -1.0079 4.0654 34 1 8.7615 0.1103 6.6796 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598515153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:41 Heat of formation + Delta-G solvation = 8.279855 kcal Electronic energy + Delta-G solvation = -18492.491355 eV Core-core repulsion = 15552.214672 eV Total energy + Delta-G solvation = -2940.276684 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.36373 -40.78873 -36.77996 -35.89919 -34.23788 -32.72969 -30.95484 -28.21080 -27.43366 -27.16391 -25.59947 -23.79580 -21.10213 -20.44986 -19.96424 -18.40853 -17.58174 -17.35981 -17.03598 -16.63950 -16.09070 -15.64218 -14.93305 -14.66433 -14.55520 -14.32023 -14.05263 -13.88829 -13.57529 -13.35426 -13.24799 -12.97251 -12.93137 -12.69981 -12.28074 -12.21791 -12.04449 -11.52327 -11.11976 -11.06608 -10.91076 -10.61070 -10.59179 -10.23185 -9.74544 -8.18177 -6.26624 -0.59445 -0.07239 0.29646 1.37729 1.39206 1.45867 1.51067 1.87568 2.22724 2.45381 3.00423 3.12433 3.58006 3.83250 4.06952 4.18942 4.30591 4.43928 4.53792 4.60518 4.66376 4.68375 4.75918 4.83016 4.93611 5.05320 5.11882 5.42755 5.57499 5.71776 5.86810 6.12762 6.50687 6.79789 7.37252 7.47136 7.58216 8.88624 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.031701 B = 0.004834 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.038382 B = 5790.490596 C = 5988.895619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.028 4.028 3 N -0.314 5.314 4 N -0.289 5.289 5 C -0.052 4.052 6 C 0.192 3.808 7 N -0.620 5.620 8 C 0.062 3.938 9 C 0.516 3.484 10 O -0.571 6.571 11 C 0.032 3.968 12 H 0.050 0.950 13 C -0.116 4.116 14 C -0.532 4.532 15 H 0.042 0.958 16 C 0.024 3.976 17 N -0.908 5.908 18 Si 0.952 3.048 19 H -0.279 1.279 20 H -0.269 1.269 21 H -0.279 1.279 22 S 0.253 5.747 23 H 0.103 0.897 24 H 0.094 0.906 25 H 0.117 0.883 26 H 0.152 0.848 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.008 0.992 33 H 0.057 0.943 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.009 -12.813 -10.626 22.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.307 4.307 3 N -0.152 5.152 4 N -0.127 5.127 5 C -0.334 4.334 6 C 0.065 3.935 7 N -0.354 5.354 8 C -0.080 4.080 9 C 0.307 3.693 10 O -0.448 6.448 11 C 0.011 3.989 12 H 0.068 0.932 13 C -0.174 4.174 14 C -0.570 4.570 15 H 0.060 0.940 16 C -0.176 4.176 17 N -0.547 5.547 18 Si 0.778 3.222 19 H -0.205 1.205 20 H -0.194 1.194 21 H -0.205 1.205 22 S 0.497 5.503 23 H 0.122 0.878 24 H 0.113 0.887 25 H 0.136 0.864 26 H 0.169 0.831 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.027 0.973 33 H 0.075 0.925 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.843 -11.948 -10.726 21.866 hybrid contribution 0.844 1.445 0.441 1.731 sum -13.999 -10.503 -10.286 20.300 Atomic orbital electron populations 1.20651 0.80867 1.06266 1.05642 1.30104 1.06295 0.92180 1.02112 1.71476 0.97247 1.29212 1.17306 1.71466 1.07056 1.19737 1.14420 1.30058 1.05382 0.92965 1.04953 1.20017 0.84754 1.03936 0.84776 1.48087 1.60073 1.13709 1.13578 1.22332 1.03512 0.83217 0.98891 1.21812 0.75786 0.82967 0.88754 1.90567 1.58461 1.27225 1.68533 1.18763 0.94617 0.98304 0.87210 0.93247 1.21666 0.96222 0.98200 1.01272 1.21254 1.28355 1.05706 1.01696 0.93992 1.25527 0.97529 0.98662 0.95845 1.69945 1.44027 1.32521 1.08190 0.85652 0.78832 0.79863 0.77872 1.20469 1.19417 1.20462 1.82861 0.94487 1.09134 1.63835 0.87827 0.88743 0.86416 0.83078 0.89674 0.90316 0.90314 0.88509 0.90845 0.97257 0.92491 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.49 71.24 0.75 -0.18 16 2 C -0.03 -0.66 7.53 88.47 0.67 0.00 16 3 N -0.31 -11.00 11.66 -50.85 -0.59 -11.59 16 4 N -0.29 -11.41 11.66 -50.85 -0.59 -12.01 16 5 C -0.05 -1.59 7.11 88.46 0.63 -0.96 16 6 C 0.19 5.51 5.98 85.63 0.51 6.03 16 7 N -0.62 -21.18 2.86 -851.15 -2.43 -23.61 16 8 C 0.06 1.50 9.85 127.77 1.26 2.76 16 9 C 0.52 24.64 6.90 87.66 0.60 25.24 16 10 O -0.57 -32.39 15.20 -3.04 -0.05 -32.44 16 11 C 0.03 1.65 1.82 -12.29 -0.02 1.63 16 12 H 0.05 2.51 7.72 -2.39 -0.02 2.49 16 13 C -0.12 -5.49 8.37 71.98 0.60 -4.89 16 14 C -0.53 -31.72 8.33 25.60 0.21 -31.51 16 15 H 0.04 2.71 6.84 -2.91 -0.02 2.69 16 16 C 0.02 1.37 5.30 84.65 0.45 1.81 16 17 N -0.91 -51.11 11.46 21.45 0.25 -50.86 16 18 Si 0.95 46.08 29.54 68.60 2.03 48.10 16 19 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 22 S 0.25 4.78 23.04 -56.49 -1.30 3.48 16 23 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.15 2.56 8.07 -2.39 -0.02 2.54 16 27 H 0.08 2.93 7.50 -2.38 -0.02 2.91 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 2.23 4.19 -2.39 -0.01 2.22 16 30 H 0.10 1.57 8.09 -2.39 -0.02 1.55 16 31 H 0.07 3.68 6.43 -2.38 -0.02 3.66 16 32 H 0.01 0.43 8.10 -2.39 -0.02 0.41 16 33 H 0.06 2.19 5.51 -2.39 -0.01 2.17 16 34 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -81.75 301.74 4.09 -77.67 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: 1.12 Total: 1.32 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 5.66 Total: -0.06 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -3.37 Total: -98.08 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.05 Total: -32.44 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.30 Total: 3.48 kcal Total: -81.75 4.09 -77.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598515153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.947 kcal (2) G-P(sol) polarization free energy of solvation -81.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds