Wall clock time and date at job start Mon Mar 30 2020 04:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29418 * 125.69787 * 2 1 4 4 N 1.26404 * 116.47550 * 179.75179 * 3 2 1 5 5 C 1.29412 * 116.47223 * 0.52769 * 4 3 2 6 6 C 1.50703 * 125.69541 * 179.76572 * 5 4 3 7 7 N 1.46508 * 109.46609 * 89.69967 * 6 5 4 8 8 C 1.46496 * 119.99819 * 269.99667 * 7 6 5 9 9 C 1.34770 * 119.99911 * 90.00209 * 7 6 5 10 10 O 1.21282 * 120.00274 * 357.07433 * 9 7 6 11 11 C 1.50701 * 119.99924 * 177.34855 * 9 7 6 12 12 H 1.09001 * 109.47385 * 317.70438 * 11 9 7 13 13 C 1.53004 * 109.47010 * 77.70429 * 11 9 7 14 14 C 1.50704 * 109.47328 * 197.70185 * 11 9 7 15 15 H 1.08004 * 119.99897 * 0.02562 * 14 11 9 16 16 C 1.37874 * 120.00010 * 179.97438 * 14 11 9 17 17 N 1.31515 * 119.99914 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99985 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47001 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47308 * 119.99986 * 18 16 14 21 21 H 1.48503 * 109.46979 * 240.00128 * 18 16 14 22 22 S 1.71218 * 125.69416 * 180.02562 * 2 1 3 23 23 H 1.09006 * 109.47194 * 269.95833 * 1 2 3 24 24 H 1.09008 * 109.47298 * 29.95400 * 1 2 3 25 25 H 1.08994 * 109.47654 * 149.96145 * 1 2 3 26 26 H 1.08998 * 109.47072 * 329.70257 * 6 5 4 27 27 H 1.08997 * 109.47389 * 209.69538 * 6 5 4 28 28 H 1.09001 * 109.47836 * 265.32568 * 8 7 6 29 29 H 1.09000 * 109.47101 * 25.33140 * 8 7 6 30 30 H 1.08999 * 109.46913 * 145.32394 * 8 7 6 31 31 H 1.09001 * 109.46807 * 307.52180 * 13 11 9 32 32 H 1.08995 * 109.46918 * 67.51924 * 13 11 9 33 33 H 1.09001 * 109.46890 * 187.52001 * 13 11 9 34 34 H 0.96999 * 119.99737 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5098 0.8484 0.0049 5 6 3.8936 -0.3875 -0.0013 6 6 5.3232 -0.8642 -0.0023 7 7 5.7871 -1.0192 1.3787 8 6 6.4205 0.1068 2.0693 9 6 5.6313 -2.1977 2.0137 10 8 5.0597 -3.1135 1.4609 11 6 6.1619 -2.3757 3.4129 12 1 7.1498 -1.9211 3.4875 13 6 5.2141 -1.7020 4.4073 14 6 6.2602 -3.8458 3.7298 15 1 5.9681 -4.5780 2.9915 16 6 6.7240 -4.2559 4.9616 17 7 7.0802 -3.3643 5.8604 18 14 6.8465 -6.0782 5.3541 19 1 6.3876 -6.8685 4.1837 20 1 8.2571 -6.4242 5.6633 21 1 5.9916 -6.3903 6.5276 22 16 2.5059 -1.3905 -0.0006 23 1 -0.3634 -0.0007 1.0277 24 1 -0.3634 0.8904 -0.5131 25 1 -0.3634 -0.8896 -0.5144 26 1 5.9491 -0.1347 -0.5161 27 1 5.3860 -1.8233 -0.5164 28 1 7.5033 0.0334 1.9671 29 1 6.0767 1.0428 1.6292 30 1 6.1529 0.0822 3.1257 31 1 5.0380 -0.6711 4.1000 32 1 4.2672 -2.2413 4.4292 33 1 5.6619 -1.7135 5.4010 34 1 7.4062 -3.6529 6.7272 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598515154.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:45 Heat of formation + Delta-G solvation = 27.703452 kcal Electronic energy + Delta-G solvation = -18512.626630 eV Core-core repulsion = 15573.192217 eV Total energy + Delta-G solvation = -2939.434413 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.18983 -39.20684 -35.28572 -33.93944 -33.09305 -30.98386 -29.67603 -27.17073 -25.84040 -25.19547 -24.48962 -22.05512 -20.00744 -19.19412 -18.41269 -16.54444 -16.02223 -15.91736 -15.67409 -15.13025 -14.40540 -14.33807 -13.50507 -13.28971 -13.25309 -13.02527 -12.81408 -12.53611 -12.39316 -12.18007 -11.83997 -11.26509 -11.04519 -10.74445 -10.62076 -10.39207 -10.30019 -10.11840 -10.03283 -9.72333 -9.54838 -9.01436 -8.67287 -8.39999 -8.33398 -6.07419 -4.10303 0.46645 1.01539 1.52303 2.56593 3.29484 3.37311 3.43788 3.48927 3.61157 4.05736 4.43359 4.55701 4.84686 5.06454 5.21218 5.26479 5.37021 5.47281 5.51392 5.59771 5.72416 5.89745 5.98714 6.12753 6.61153 6.77875 6.86281 6.91893 7.39939 7.68558 7.85860 7.99550 8.28281 8.61357 8.95939 9.04122 9.54831 11.00787 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.028299 B = 0.005166 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.199784 B = 5419.246969 C = 5755.486589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.042 4.042 3 N -0.268 5.268 4 N -0.258 5.258 5 C -0.031 4.031 6 C 0.194 3.806 7 N -0.625 5.625 8 C 0.077 3.923 9 C 0.521 3.479 10 O -0.538 6.538 11 C 0.034 3.966 12 H 0.051 0.949 13 C -0.130 4.130 14 C -0.501 4.501 15 H 0.073 0.927 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.899 3.101 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.284 1.284 22 S 0.215 5.785 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.014 0.986 32 H 0.035 0.965 33 H 0.091 0.909 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.759 6.748 -10.364 14.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.320 4.320 3 N -0.108 5.108 4 N -0.097 5.097 5 C -0.311 4.311 6 C 0.066 3.934 7 N -0.361 5.361 8 C -0.066 4.066 9 C 0.313 3.687 10 O -0.413 6.413 11 C 0.013 3.987 12 H 0.069 0.931 13 C -0.188 4.188 14 C -0.540 4.540 15 H 0.091 0.909 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 S 0.458 5.542 23 H 0.107 0.893 24 H 0.109 0.891 25 H 0.101 0.899 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.033 0.967 32 H 0.054 0.946 33 H 0.109 0.891 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.924 6.580 -10.460 14.679 hybrid contribution 0.139 -0.650 0.392 0.772 sum -7.785 5.930 -10.068 14.040 Atomic orbital electron populations 1.20325 0.84269 1.04313 1.04224 1.29282 1.04407 0.93187 1.05139 1.71418 0.97040 1.27131 1.15161 1.71426 1.06474 1.17151 1.14668 1.29902 1.04258 0.92713 1.04252 1.19754 0.84660 1.02490 0.86471 1.48252 1.61492 1.13746 1.12596 1.21942 0.97435 0.88205 0.99033 1.22249 0.77188 0.79553 0.89704 1.90523 1.42104 1.40609 1.68082 1.18882 0.95997 0.98961 0.84903 0.93148 1.21791 0.99022 0.95060 1.02953 1.21125 1.42711 0.90209 0.99924 0.90931 1.24940 0.95099 0.97995 0.96090 1.69893 1.44366 1.33003 1.06159 0.86406 0.77557 0.85020 0.78327 1.19566 1.21028 1.21021 1.84215 0.96805 1.10065 1.63073 0.89282 0.89137 0.89867 0.87754 0.87726 0.92544 0.91490 0.89785 0.96688 0.94617 0.89066 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.48 36.00 0.38 -0.24 16 2 C -0.04 -0.56 7.53 -13.30 -0.10 -0.66 16 3 N -0.27 -4.34 11.66 32.58 0.38 -3.96 16 4 N -0.26 -4.33 11.66 32.58 0.38 -3.95 16 5 C -0.03 -0.49 7.11 -13.30 -0.09 -0.59 16 6 C 0.19 2.91 5.96 -5.19 -0.03 2.88 16 7 N -0.62 -11.05 2.86 -182.95 -0.52 -11.57 16 8 C 0.08 1.16 9.75 59.84 0.58 1.75 16 9 C 0.52 11.50 6.85 -10.99 -0.08 11.43 16 10 O -0.54 -13.00 15.25 5.56 0.08 -12.91 16 11 C 0.03 0.82 1.82 -92.92 -0.17 0.65 16 12 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 13 C -0.13 -3.03 8.51 37.16 0.32 -2.71 16 14 C -0.50 -13.87 8.34 -34.44 -0.29 -14.15 16 15 H 0.07 2.11 6.90 -52.48 -0.36 1.75 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 17 N -0.90 -24.73 11.41 55.43 0.63 -24.10 16 18 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 S 0.21 3.09 23.04 -107.50 -2.48 0.61 16 23 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.10 1.27 8.07 -51.93 -0.42 0.85 16 27 H 0.10 1.56 7.46 -51.93 -0.39 1.17 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 30 H 0.08 1.38 4.73 -51.93 -0.25 1.14 16 31 H 0.01 0.30 5.91 -51.93 -0.31 -0.01 16 32 H 0.03 0.85 8.13 -51.93 -0.42 0.43 16 33 H 0.09 2.28 6.31 -51.93 -0.33 1.95 16 34 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 302.32 15.07 4.56 4.56 Total: -1.00 -31.85 302.32 -5.67 -37.52 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -4.10 Total: -2.46 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 0.42 Total: -0.11 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.87 Total: -43.59 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.48 Total: 0.61 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.85 -5.67 -37.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598515154.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.219 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds