Wall clock time and date at job start Mon Mar 30 2020 04:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29418 * 125.69787 * 2 1 4 4 N 1.26404 * 116.47550 * 179.75179 * 3 2 1 5 5 C 1.29412 * 116.47223 * 0.52769 * 4 3 2 6 6 C 1.50703 * 125.69541 * 179.76572 * 5 4 3 7 7 N 1.46508 * 109.46609 * 89.69967 * 6 5 4 8 8 C 1.46496 * 119.99819 * 269.99667 * 7 6 5 9 9 C 1.34770 * 119.99911 * 90.00209 * 7 6 5 10 10 O 1.21282 * 120.00274 * 357.07433 * 9 7 6 11 11 C 1.50701 * 119.99924 * 177.34855 * 9 7 6 12 12 H 1.09001 * 109.47385 * 317.70438 * 11 9 7 13 13 C 1.53004 * 109.47010 * 77.70429 * 11 9 7 14 14 C 1.50704 * 109.47328 * 197.70185 * 11 9 7 15 15 H 1.08004 * 119.99897 * 0.02562 * 14 11 9 16 16 C 1.37874 * 120.00010 * 179.97438 * 14 11 9 17 17 N 1.31515 * 119.99914 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99985 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47001 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47308 * 119.99986 * 18 16 14 21 21 H 1.48503 * 109.46979 * 240.00128 * 18 16 14 22 22 S 1.71218 * 125.69416 * 180.02562 * 2 1 3 23 23 H 1.09006 * 109.47194 * 269.95833 * 1 2 3 24 24 H 1.09008 * 109.47298 * 29.95400 * 1 2 3 25 25 H 1.08994 * 109.47654 * 149.96145 * 1 2 3 26 26 H 1.08998 * 109.47072 * 329.70257 * 6 5 4 27 27 H 1.08997 * 109.47389 * 209.69538 * 6 5 4 28 28 H 1.09001 * 109.47836 * 265.32568 * 8 7 6 29 29 H 1.09000 * 109.47101 * 25.33140 * 8 7 6 30 30 H 1.08999 * 109.46913 * 145.32394 * 8 7 6 31 31 H 1.09001 * 109.46807 * 307.52180 * 13 11 9 32 32 H 1.08995 * 109.46918 * 67.51924 * 13 11 9 33 33 H 1.09001 * 109.46890 * 187.52001 * 13 11 9 34 34 H 0.96999 * 119.99737 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5098 0.8484 0.0049 5 6 3.8936 -0.3875 -0.0013 6 6 5.3232 -0.8642 -0.0023 7 7 5.7871 -1.0192 1.3787 8 6 6.4205 0.1068 2.0693 9 6 5.6313 -2.1977 2.0137 10 8 5.0597 -3.1135 1.4609 11 6 6.1619 -2.3757 3.4129 12 1 7.1498 -1.9211 3.4875 13 6 5.2141 -1.7020 4.4073 14 6 6.2602 -3.8458 3.7298 15 1 5.9681 -4.5780 2.9915 16 6 6.7240 -4.2559 4.9616 17 7 7.0802 -3.3643 5.8604 18 14 6.8465 -6.0782 5.3541 19 1 6.3876 -6.8685 4.1837 20 1 8.2571 -6.4242 5.6633 21 1 5.9916 -6.3903 6.5276 22 16 2.5059 -1.3905 -0.0006 23 1 -0.3634 -0.0007 1.0277 24 1 -0.3634 0.8904 -0.5131 25 1 -0.3634 -0.8896 -0.5144 26 1 5.9491 -0.1347 -0.5161 27 1 5.3860 -1.8233 -0.5164 28 1 7.5033 0.0334 1.9671 29 1 6.0767 1.0428 1.6292 30 1 6.1529 0.0822 3.1257 31 1 5.0380 -0.6711 4.1000 32 1 4.2672 -2.2413 4.4292 33 1 5.6619 -1.7135 5.4010 34 1 7.4062 -3.6529 6.7272 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598515154.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:45 Heat of formation + Delta-G solvation = 6.604762 kcal Electronic energy + Delta-G solvation = -18513.541538 eV Core-core repulsion = 15573.192217 eV Total energy + Delta-G solvation = -2940.349321 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.35633 -40.82914 -36.77693 -35.87168 -34.24486 -32.69736 -30.99983 -28.34815 -27.30580 -27.12252 -25.68421 -23.78408 -21.26574 -20.34609 -19.91292 -18.41082 -17.65123 -17.35555 -17.05095 -16.62616 -16.09084 -15.60612 -14.88088 -14.83044 -14.42510 -14.33064 -14.06670 -13.88899 -13.51329 -13.36201 -13.27700 -12.95871 -12.91891 -12.66432 -12.39238 -12.26180 -12.04210 -11.51270 -11.25323 -11.05688 -10.93455 -10.65133 -10.57476 -10.25378 -9.78911 -8.15263 -6.24873 -0.65165 -0.08301 0.39718 1.37979 1.40556 1.43230 1.55641 1.80566 2.19172 2.46935 2.97711 3.15664 3.52279 3.76253 4.02454 4.20491 4.28561 4.36124 4.54351 4.58158 4.66836 4.68614 4.70721 4.83223 4.94923 5.02911 5.09060 5.39841 5.52619 5.71621 5.88860 6.12873 6.45785 6.82536 7.33204 7.44847 7.45178 8.91546 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.028299 B = 0.005166 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.199784 B = 5419.246969 C = 5755.486589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.024 4.024 3 N -0.300 5.300 4 N -0.271 5.271 5 C -0.045 4.045 6 C 0.194 3.806 7 N -0.618 5.618 8 C 0.075 3.925 9 C 0.522 3.478 10 O -0.567 6.567 11 C 0.030 3.970 12 H 0.043 0.957 13 C -0.116 4.116 14 C -0.525 4.525 15 H 0.051 0.949 16 C 0.020 3.980 17 N -0.912 5.912 18 Si 0.955 3.045 19 H -0.277 1.277 20 H -0.275 1.275 21 H -0.277 1.277 22 S 0.207 5.793 23 H 0.102 0.898 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.136 0.864 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.019 0.981 33 H 0.071 0.929 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.401 7.248 -10.890 15.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.302 4.302 3 N -0.139 5.139 4 N -0.110 5.110 5 C -0.326 4.326 6 C 0.067 3.933 7 N -0.352 5.352 8 C -0.067 4.067 9 C 0.313 3.687 10 O -0.445 6.445 11 C 0.009 3.991 12 H 0.061 0.939 13 C -0.174 4.174 14 C -0.563 4.563 15 H 0.069 0.931 16 C -0.179 4.179 17 N -0.551 5.551 18 Si 0.781 3.219 19 H -0.201 1.201 20 H -0.200 1.200 21 H -0.203 1.203 22 S 0.451 5.549 23 H 0.121 0.879 24 H 0.123 0.877 25 H 0.126 0.874 26 H 0.154 0.846 27 H 0.121 0.879 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.090 0.910 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.556 7.132 -10.995 15.651 hybrid contribution 0.278 -0.747 0.523 0.954 sum -8.277 6.385 -10.472 14.797 Atomic orbital electron populations 1.20631 0.81013 1.06241 1.05595 1.29978 1.06113 0.91911 1.02184 1.71388 0.97142 1.28163 1.17163 1.71369 1.07148 1.17635 1.14839 1.29869 1.04700 0.92790 1.05229 1.19959 0.85108 1.03468 0.84738 1.48099 1.60580 1.12860 1.13638 1.22077 0.98406 0.88105 0.98136 1.21711 0.77218 0.80685 0.89084 1.90501 1.43503 1.41968 1.68490 1.18776 0.95987 0.97295 0.87039 0.93873 1.21586 0.97618 0.96415 1.01733 1.21270 1.43416 0.91702 0.99924 0.93115 1.25587 0.94714 1.01691 0.95889 1.69970 1.44376 1.34389 1.06360 0.85547 0.77947 0.80566 0.77865 1.20145 1.20001 1.20304 1.84266 0.96864 1.10599 1.63182 0.87940 0.87706 0.87400 0.84589 0.87865 0.90834 0.89278 0.91183 0.93897 0.96226 0.90985 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 10.48 71.23 0.75 -0.35 16 2 C -0.02 -0.59 7.53 88.46 0.67 0.08 16 3 N -0.30 -9.26 11.66 -50.85 -0.59 -9.86 16 4 N -0.27 -8.72 11.66 -50.84 -0.59 -9.32 16 5 C -0.05 -1.37 7.11 88.47 0.63 -0.75 16 6 C 0.19 5.54 5.96 85.63 0.51 6.05 16 7 N -0.62 -21.13 2.86 -851.13 -2.43 -23.56 16 8 C 0.07 2.13 9.75 127.77 1.25 3.38 16 9 C 0.52 23.03 6.85 87.66 0.60 23.63 16 10 O -0.57 -27.66 15.25 -3.04 -0.05 -27.71 16 11 C 0.03 1.49 1.82 -12.28 -0.02 1.47 16 12 H 0.04 2.17 7.51 -2.39 -0.02 2.15 16 13 C -0.12 -5.40 8.51 71.98 0.61 -4.78 16 14 C -0.52 -29.51 8.34 25.60 0.21 -29.30 16 15 H 0.05 3.02 6.90 -2.91 -0.02 3.00 16 16 C 0.02 1.12 5.30 84.65 0.45 1.57 16 17 N -0.91 -50.44 11.41 21.45 0.24 -50.20 16 18 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 S 0.21 5.74 23.04 -56.49 -1.30 4.44 16 23 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.14 2.98 8.07 -2.39 -0.02 2.96 16 27 H 0.10 2.99 7.46 -2.39 -0.02 2.97 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.09 2.17 8.04 -2.39 -0.02 2.15 16 30 H 0.07 2.21 4.73 -2.39 -0.01 2.20 16 31 H 0.04 1.71 5.91 -2.39 -0.01 1.70 16 32 H 0.02 0.92 8.13 -2.39 -0.02 0.90 16 33 H 0.07 3.63 6.31 -2.39 -0.02 3.62 16 34 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -68.38 302.32 4.08 -64.31 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: 1.12 Total: 4.89 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 5.65 Total: 0.99 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -3.37 Total: -92.93 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.71 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 5.74 SS G_CDS: -1.30 Total: 4.44 kcal Total: -68.38 4.08 -64.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598515154.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.912 kcal (2) G-P(sol) polarization free energy of solvation -68.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds